| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is bcsP31 [H]
Identifier: 209694773
GI number: 209694773
Start: 1338909
End: 1339841
Strand: Direct
Name: bcsP31 [H]
Synonym: VSAL_I1229
Alternate gene names: 209694773
Gene position: 1338909-1339841 (Clockwise)
Preceding gene: 209694772
Following gene: 209694774
Centisome position: 40.27
GC content: 41.26
Gene sequence:
>933_bases ATGATTGTGTTTAAACGTAACTTACTATTGGCTTTATTATTTATATTGCCATCAGCAGTGAACGCTGAGAACTATTCAAT TGGTACGGGTGGGCAGAGTGGGATCTATTATCCGTTTGGTGGTGCGTTAGCAAAAGTGTGGTCAGAACATGTACCCGATG TGAATGCGAAAGCTGAAGTGACAGCCGCTTCAGTAGAGAACACAATCAAAGTGGTACGTGGCGATATGATCGCAGGTATC GCAATGGGGAATGTCGTGCTTGATGCCTACAATGGCAAAGGTAAATTTCCGAAAAAAATGCCAGTAAACACCCTTTTTGC ACTGTACCCAAACCTAGTGCATACACTAACTCTTGAAAAATCAGGCATTACGTCATTATCACAATTAAAAGGCAAGCGAG TGTCTTTAGGGGCTCCTGCCAGTGGTACGGCTGTGACGTCTGCTGCTTTGCTTGAATCTTTAGGTATTGATGTGAAAAAA GACATTGATGCCGTGTATTTAAATTATTCTGAAACGACTAATGCGCTTGCGAATGGTCAAATTGATGCTGGCTTTATTGT GGGTGGTCAAGGCGTAGGGGCGGTAACTCAAATCGCGTTAACGCATAAAATTAAAGTGCTTTCAATTACACCAGAAGAAA GTGCAATGTTCATGAAAAAATACCCTGCATACAGCACGTACGATATGCCTGCTGGTGTATACAACAATGTAGGTGAAGTA TCGACATTAAGTGTATGGAACGTATTGGTTGTAAACGCAAAAATGAGTGATGACATGGCATACAACTTAACCAAAGCCGC TTTTGAAAATATCGGCGATGTTCGTAAAGTGGTTAAAATGGCAGAGATGACAACACCTGAAAATGCAGATCGCTTACAAG GTGTCCCTCTTCATCCTGGTGCTCAAAAATATCTTGATTCAATCATAAAATAA
Upstream 100 bases:
>100_bases TTTCATTTTACCGCGGGTAATGTGAGCTTGCTGATAAACTAATCTATTATAAACATTTTATGTAGAGTCTTTGTCTGAAT AAATATTAATAATCAAGGAG
Downstream 100 bases:
>100_bases TAAGCGCCAAATACACGCAAAACGAAAGGGTAAGTGTCTCGCTTGCCTTTTCTTCTTTTCTGACTTTATCCAAAGGCATT AATATGGATATTATGACCGA
Product: immunogenic protein precursor
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 310; Mature: 310
Protein sequence:
>310_residues MIVFKRNLLLALLFILPSAVNAENYSIGTGGQSGIYYPFGGALAKVWSEHVPDVNAKAEVTAASVENTIKVVRGDMIAGI AMGNVVLDAYNGKGKFPKKMPVNTLFALYPNLVHTLTLEKSGITSLSQLKGKRVSLGAPASGTAVTSAALLESLGIDVKK DIDAVYLNYSETTNALANGQIDAGFIVGGQGVGAVTQIALTHKIKVLSITPEESAMFMKKYPAYSTYDMPAGVYNNVGEV STLSVWNVLVVNAKMSDDMAYNLTKAAFENIGDVRKVVKMAEMTTPENADRLQGVPLHPGAQKYLDSIIK
Sequences:
>Translated_310_residues MIVFKRNLLLALLFILPSAVNAENYSIGTGGQSGIYYPFGGALAKVWSEHVPDVNAKAEVTAASVENTIKVVRGDMIAGI AMGNVVLDAYNGKGKFPKKMPVNTLFALYPNLVHTLTLEKSGITSLSQLKGKRVSLGAPASGTAVTSAALLESLGIDVKK DIDAVYLNYSETTNALANGQIDAGFIVGGQGVGAVTQIALTHKIKVLSITPEESAMFMKKYPAYSTYDMPAGVYNNVGEV STLSVWNVLVVNAKMSDDMAYNLTKAAFENIGDVRKVVKMAEMTTPENADRLQGVPLHPGAQKYLDSIIK >Mature_310_residues MIVFKRNLLLALLFILPSAVNAENYSIGTGGQSGIYYPFGGALAKVWSEHVPDVNAKAEVTAASVENTIKVVRGDMIAGI AMGNVVLDAYNGKGKFPKKMPVNTLFALYPNLVHTLTLEKSGITSLSQLKGKRVSLGAPASGTAVTSAALLESLGIDVKK DIDAVYLNYSETTNALANGQIDAGFIVGGQGVGAVTQIALTHKIKVLSITPEESAMFMKKYPAYSTYDMPAGVYNNVGEV STLSVWNVLVVNAKMSDDMAYNLTKAAFENIGDVRKVVKMAEMTTPENADRLQGVPLHPGAQKYLDSIIK
Specific function: Unknown
COG id: COG2358
COG function: function code R; TRAP-type uncharacterized transport system, periplasmic component
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR015168 - InterPro: IPR011852 [H]
Pfam domain/function: PF09084 NMT1 [H]
EC number: NA
Molecular weight: Translated: 33023; Mature: 33023
Theoretical pI: Translated: 8.99; Mature: 8.99
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIVFKRNLLLALLFILPSAVNAENYSIGTGGQSGIYYPFGGALAKVWSEHVPDVNAKAEV CEEEEHHHHHHHHHHHCCCCCCCCEEECCCCCCCEEECCCHHHHHHHHHHCCCCCCCCEE TAASVENTIKVVRGDMIAGIAMGNVVLDAYNGKGKFPKKMPVNTLFALYPNLVHTLTLEK EHHHHHHHHHHHHHHHHHHEEECCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHEEEECC SGITSLSQLKGKRVSLGAPASGTAVTSAALLESLGIDVKKDIDAVYLNYSETTNALANGQ CCCCHHHHHCCCEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCHHHHHHHCCC IDAGFIVGGQGVGAVTQIALTHKIKVLSITPEESAMFMKKYPAYSTYDMPAGVYNNVGEV CCCEEEECCCCCCHHHHHEEHEEEEEEEECCCHHHHHHHHCCCCCCCCCCCCHHCCCCCC STLSVWNVLVVNAKMSDDMAYNLTKAAFENIGDVRKVVKMAEMTTPENADRLQGVPLHPG CCEEEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCC AQKYLDSIIK HHHHHHHHCC >Mature Secondary Structure MIVFKRNLLLALLFILPSAVNAENYSIGTGGQSGIYYPFGGALAKVWSEHVPDVNAKAEV CEEEEHHHHHHHHHHHCCCCCCCCEEECCCCCCCEEECCCHHHHHHHHHHCCCCCCCCEE TAASVENTIKVVRGDMIAGIAMGNVVLDAYNGKGKFPKKMPVNTLFALYPNLVHTLTLEK EHHHHHHHHHHHHHHHHHHEEECCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHEEEECC SGITSLSQLKGKRVSLGAPASGTAVTSAALLESLGIDVKKDIDAVYLNYSETTNALANGQ CCCCHHHHHCCCEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCHHHHHHHCCC IDAGFIVGGQGVGAVTQIALTHKIKVLSITPEESAMFMKKYPAYSTYDMPAGVYNNVGEV CCCEEEECCCCCCHHHHHEEHEEEEEEEECCCHHHHHHHHCCCCCCCCCCCCHHCCCCCC STLSVWNVLVVNAKMSDDMAYNLTKAAFENIGDVRKVVKMAEMTTPENADRLQGVPLHPG CCEEEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCC AQKYLDSIIK HHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 3133283 [H]