Definition Aliivibrio salmonicida LFI1238 chromosome 1, complete genome.
Accession NC_011312
Length 3,325,165

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The map label for this gene is 209694772

Identifier: 209694772

GI number: 209694772

Start: 1336870

End: 1338675

Strand: Direct

Name: 209694772

Synonym: VSAL_I1228

Alternate gene names: NA

Gene position: 1336870-1338675 (Clockwise)

Preceding gene: 209694771

Following gene: 209694773

Centisome position: 40.2

GC content: 41.64

Gene sequence:

>1806_bases
ATGAATCGTAATACTCTCACTTTAACCACATTAGCGGTGGTCACTTCAGCATTGTTAGGTTGTAGCCAGCAATCAAATAT
ACCAACATCAGAAAATACATTTTCAGCAATAGACACTTTTGGTATTCAATGTAAATCACAAGAAGAGCCAAAGCGCGGCA
GTTCAGGCATTCGTGGACTGACATTCGTTGGTTCATCCATCGCTGATGCCCCCTTTGTTACCTCTGCAGCAGAGATCGTC
AGTTACGACTCGTGTACTGATAAGTTGTATGTTGTAAACGCTCAAGCCAAAAAAATTGATGTATTAACCCTTGATGCCAA
TAGCCAACCAAAGGCGGCAGGGTATATTGATCTTCAATCAGCAGCGAAGCGTTCTGGTATTGAGATTGGTGCAGCAAACA
GTGTCTCTGCTCATCATGGGTTAGTTGCTGTTGCGGTTGAAAACAAAGATAAACAGAAGAATGGCATTATTGCTTTGTTC
CGATCGGATTCTCTTGAACTACTCACGACATACCCCGCAGGTGCTTTGCCTGATATGGTGAGTTTTTCCAAAGACGGTCG
TTATATTGCAGCAGCGAATGAAGGGGAGCCGAGTGCCGATTATTCAATTGATCCAGAAGGCAGCGTAACGTTAATCGATA
TTGCTAATGGCCCATTAAATGCGTCAGTTATTCAACTTGATTTTAATGCGTTTGATATGGGCGGCTCGCGTCATTCAGAG
TTAACAGATAAAGTTCGTATTTCTGCACCGACGGCAAGCGTTTCTCAAGATCTTGAGCCTGAATATTTAACTTTTTCAGA
TAACGGTAAGTTGTATGTCGCATTACAAGAGAACAATGCATTAGCCGCGATTGATGTAGAAAGTGCATCGATTGATGGTA
TTTTCGGTTTGGGTGGAAAATCATGGGAAAACGCTCAATTAGACGCTTCAAATAAAGATAAAACACTAGGAAATTTCCAA
AATTACCCAATGCTTGAAGGGTTGTATATGCCAGACAGCATCACAAGTTATAGCGTTAATGGTAATACTTATATTGTGAC
GGCTAACGAAGGTGATGGCCGAGAATATGGGGTCCAAACAACCCAGAAACAGTGTGATGAAAAAGCGTATGAGTGGGATG
GAGATGACTACAAGGGCACTGCCGAATATGCGACTAAACAAGATTTTTGTATTGCTTACGTTGATGAGATTCGTGGTAAA
AAATTAGATGTTGATAATAATCATCCATTAGCATCGGCATTGAAAGATAAAAATCAGCTAGCCCGTTTAAAAGTGGTTAA
GCCGCAAGGCATGTTAGCGGCTGATGAAAAAGTACAAGCGTTTGGCAGTCGTTCATTCTCTATATGGGATGAATCTGGTG
AATTTGTTTTTGATAGCGGCGATGAATTTGCTCGTATCGTGTTTGAGAAGAATAAAGAAAACTTCAATAGTACGAATGAT
AATAACAGCAGTGCTGATGACCGCAGTGATGACAAAGGTGCCGAGCCAGAAGCGATTGAGGTAGCAAGTATTAATGGTCG
TCAATATGCATTTATTGGCCTAGAGCGTCAAGGCGGTGTGATGGTATACGACGTAACAAAACCGAAAGAATCTCGCTTTA
TTACGTATGTGAATAATCGTAATTTTGATGAACCAGTGTGTACCCAAGTTGATGCCGAGGGCGAATGCCAAAATGGGATC
TACAATCCGAAAGCAGGGGATTTAGGGCCTGAATCCATTAAGTACTTTACTCGTTTAGGTGATCATTTTATCGCCGTGGG
TAATGAAGTCAGTGGGACGACTTCTGTGTACCGTATCGATATGTAA

Upstream 100 bases:

>100_bases
CGAGCTATTGCCTTTTTGTCTTTAATTCGCAATAAATCCGAAAACAAACTGTCACATAACCATTCTATGATCGCCAAATC
AAATTGATCATGGAGGATAT

Downstream 100 bases:

>100_bases
TTTCCCTCTATAATAAAAGTAAAACAGAGAGAAAGGCAATCAGCGTGTGTTGGTTGCCTTTTTTGTTTTTACAAAATTAG
ATAGACACAATAACTTAACA

Product: hypothetical protein

Products: NA

Alternate protein names: Alkaline Phosphatase-Like Protein; 5-Nucleotidase Domain Protein; 5-Nucleotidase Domain-Containing Protein; Transcriptional Regulator MerR Family Protein; MerR Family Transcriptional Regulator; CHU Large Protein; LPXTG-Motif Cell Wall Anchor Domain Protein; 5-Nucleotidase C-Terminal Domain Protein; Collagen Triple Helix Repeat Protein; 5-Nucleotidase/2' 3'-Cyclic Phosphodiesterase; Atypical Alkaline Phosphatase With Phytase-Like Insertion; Metallophosphoesterase; PEP-CTERM Exosortase Interaction Domain Protein; Ig Domain Domain Protein; Endonuclease/Exonuclease/Phosphatase; Ig Family Protein; Secreted Protein

Number of amino acids: Translated: 601; Mature: 601

Protein sequence:

>601_residues
MNRNTLTLTTLAVVTSALLGCSQQSNIPTSENTFSAIDTFGIQCKSQEEPKRGSSGIRGLTFVGSSIADAPFVTSAAEIV
SYDSCTDKLYVVNAQAKKIDVLTLDANSQPKAAGYIDLQSAAKRSGIEIGAANSVSAHHGLVAVAVENKDKQKNGIIALF
RSDSLELLTTYPAGALPDMVSFSKDGRYIAAANEGEPSADYSIDPEGSVTLIDIANGPLNASVIQLDFNAFDMGGSRHSE
LTDKVRISAPTASVSQDLEPEYLTFSDNGKLYVALQENNALAAIDVESASIDGIFGLGGKSWENAQLDASNKDKTLGNFQ
NYPMLEGLYMPDSITSYSVNGNTYIVTANEGDGREYGVQTTQKQCDEKAYEWDGDDYKGTAEYATKQDFCIAYVDEIRGK
KLDVDNNHPLASALKDKNQLARLKVVKPQGMLAADEKVQAFGSRSFSIWDESGEFVFDSGDEFARIVFEKNKENFNSTND
NNSSADDRSDDKGAEPEAIEVASINGRQYAFIGLERQGGVMVYDVTKPKESRFITYVNNRNFDEPVCTQVDAEGECQNGI
YNPKAGDLGPESIKYFTRLGDHFIAVGNEVSGTTSVYRIDM

Sequences:

>Translated_601_residues
MNRNTLTLTTLAVVTSALLGCSQQSNIPTSENTFSAIDTFGIQCKSQEEPKRGSSGIRGLTFVGSSIADAPFVTSAAEIV
SYDSCTDKLYVVNAQAKKIDVLTLDANSQPKAAGYIDLQSAAKRSGIEIGAANSVSAHHGLVAVAVENKDKQKNGIIALF
RSDSLELLTTYPAGALPDMVSFSKDGRYIAAANEGEPSADYSIDPEGSVTLIDIANGPLNASVIQLDFNAFDMGGSRHSE
LTDKVRISAPTASVSQDLEPEYLTFSDNGKLYVALQENNALAAIDVESASIDGIFGLGGKSWENAQLDASNKDKTLGNFQ
NYPMLEGLYMPDSITSYSVNGNTYIVTANEGDGREYGVQTTQKQCDEKAYEWDGDDYKGTAEYATKQDFCIAYVDEIRGK
KLDVDNNHPLASALKDKNQLARLKVVKPQGMLAADEKVQAFGSRSFSIWDESGEFVFDSGDEFARIVFEKNKENFNSTND
NNSSADDRSDDKGAEPEAIEVASINGRQYAFIGLERQGGVMVYDVTKPKESRFITYVNNRNFDEPVCTQVDAEGECQNGI
YNPKAGDLGPESIKYFTRLGDHFIAVGNEVSGTTSVYRIDM
>Mature_601_residues
MNRNTLTLTTLAVVTSALLGCSQQSNIPTSENTFSAIDTFGIQCKSQEEPKRGSSGIRGLTFVGSSIADAPFVTSAAEIV
SYDSCTDKLYVVNAQAKKIDVLTLDANSQPKAAGYIDLQSAAKRSGIEIGAANSVSAHHGLVAVAVENKDKQKNGIIALF
RSDSLELLTTYPAGALPDMVSFSKDGRYIAAANEGEPSADYSIDPEGSVTLIDIANGPLNASVIQLDFNAFDMGGSRHSE
LTDKVRISAPTASVSQDLEPEYLTFSDNGKLYVALQENNALAAIDVESASIDGIFGLGGKSWENAQLDASNKDKTLGNFQ
NYPMLEGLYMPDSITSYSVNGNTYIVTANEGDGREYGVQTTQKQCDEKAYEWDGDDYKGTAEYATKQDFCIAYVDEIRGK
KLDVDNNHPLASALKDKNQLARLKVVKPQGMLAADEKVQAFGSRSFSIWDESGEFVFDSGDEFARIVFEKNKENFNSTND
NNSSADDRSDDKGAEPEAIEVASINGRQYAFIGLERQGGVMVYDVTKPKESRFITYVNNRNFDEPVCTQVDAEGECQNGI
YNPKAGDLGPESIKYFTRLGDHFIAVGNEVSGTTSVYRIDM

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 65083; Mature: 65083

Theoretical pI: Translated: 4.30; Mature: 4.30

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRNTLTLTTLAVVTSALLGCSQQSNIPTSENTFSAIDTFGIQCKSQEEPKRGSSGIRGL
CCCCEEEEHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCEEECCCCCCCCCCCCCCEE
TFVGSSIADAPFVTSAAEIVSYDSCTDKLYVVNAQAKKIDVLTLDANSQPKAAGYIDLQS
EEECCCCCCCCCHHHHHHHHCCCCCCCEEEEEECCCCEEEEEEECCCCCCCCCEEEEHHH
AAKRSGIEIGAANSVSAHHGLVAVAVENKDKQKNGIIALFRSDSLELLTTYPAGALPDMV
HHHHCCCEEECCCCCCCCCCEEEEEECCCCCCCCCEEEEEECCCEEEEEECCCCCCCHHH
SFSKDGRYIAAANEGEPSADYSIDPEGSVTLIDIANGPLNASVIQLDFNAFDMGGSRHSE
HHCCCCCEEEEECCCCCCCCCEECCCCCEEEEEECCCCCCCEEEEEECCEEECCCCCCCC
LTDKVRISAPTASVSQDLEPEYLTFSDNGKLYVALQENNALAAIDVESASIDGIFGLGGK
CCCEEEEECCCCHHHCCCCCCEEEECCCCEEEEEEECCCEEEEEEECCCCCCEEEECCCC
SWENAQLDASNKDKTLGNFQNYPMLEGLYMPDSITSYSVNGNTYIVTANEGDGREYGVQT
CCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCEEEEECCCEEEEECCCCCCCCCCCCH
TQKQCDEKAYEWDGDDYKGTAEYATKQDFCIAYVDEIRGKKLDVDNNHPLASALKDKNQL
HHHHHHHHCCCCCCCCCCCCHHHCCCCCEEEEEEHHHCCCEECCCCCCCHHHHHHCCCCE
ARLKVVKPQGMLAADEKVQAFGSRSFSIWDESGEFVFDSGDEFARIVFEKNKENFNSTND
EEEEEECCCCCEECCHHHHHHCCCEEEEECCCCCEEEECCCCEEEEEEECCCCCCCCCCC
NNSSADDRSDDKGAEPEAIEVASINGRQYAFIGLERQGGVMVYDVTKPKESRFITYVNNR
CCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEECCCCEEEEEECCCCCCEEEEEECCC
NFDEPVCTQVDAEGECQNGIYNPKAGDLGPESIKYFTRLGDHFIAVGNEVSGTTSVYRID
CCCCHHHEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCEEEEECCCCCCCEEEEEEE
M
C
>Mature Secondary Structure
MNRNTLTLTTLAVVTSALLGCSQQSNIPTSENTFSAIDTFGIQCKSQEEPKRGSSGIRGL
CCCCEEEEHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCEEECCCCCCCCCCCCCCEE
TFVGSSIADAPFVTSAAEIVSYDSCTDKLYVVNAQAKKIDVLTLDANSQPKAAGYIDLQS
EEECCCCCCCCCHHHHHHHHCCCCCCCEEEEEECCCCEEEEEEECCCCCCCCCEEEEHHH
AAKRSGIEIGAANSVSAHHGLVAVAVENKDKQKNGIIALFRSDSLELLTTYPAGALPDMV
HHHHCCCEEECCCCCCCCCCEEEEEECCCCCCCCCEEEEEECCCEEEEEECCCCCCCHHH
SFSKDGRYIAAANEGEPSADYSIDPEGSVTLIDIANGPLNASVIQLDFNAFDMGGSRHSE
HHCCCCCEEEEECCCCCCCCCEECCCCCEEEEEECCCCCCCEEEEEECCEEECCCCCCCC
LTDKVRISAPTASVSQDLEPEYLTFSDNGKLYVALQENNALAAIDVESASIDGIFGLGGK
CCCEEEEECCCCHHHCCCCCCEEEECCCCEEEEEEECCCEEEEEEECCCCCCEEEECCCC
SWENAQLDASNKDKTLGNFQNYPMLEGLYMPDSITSYSVNGNTYIVTANEGDGREYGVQT
CCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCEEEEECCCEEEEECCCCCCCCCCCCH
TQKQCDEKAYEWDGDDYKGTAEYATKQDFCIAYVDEIRGKKLDVDNNHPLASALKDKNQL
HHHHHHHHCCCCCCCCCCCCHHHCCCCCEEEEEEHHHCCCEECCCCCCCHHHHHHCCCCE
ARLKVVKPQGMLAADEKVQAFGSRSFSIWDESGEFVFDSGDEFARIVFEKNKENFNSTND
EEEEEECCCCCEECCHHHHHHCCCEEEEECCCCCEEEECCCCEEEEEEECCCCCCCCCCC
NNSSADDRSDDKGAEPEAIEVASINGRQYAFIGLERQGGVMVYDVTKPKESRFITYVNNR
CCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEECCCCEEEEEECCCCCCEEEEEECCC
NFDEPVCTQVDAEGECQNGIYNPKAGDLGPESIKYFTRLGDHFIAVGNEVSGTTSVYRID
CCCCHHHEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCEEEEECCCCCCCEEEEEEE
M
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA