| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
Click here to switch to the map view.
The map label for this gene is 209694772
Identifier: 209694772
GI number: 209694772
Start: 1336870
End: 1338675
Strand: Direct
Name: 209694772
Synonym: VSAL_I1228
Alternate gene names: NA
Gene position: 1336870-1338675 (Clockwise)
Preceding gene: 209694771
Following gene: 209694773
Centisome position: 40.2
GC content: 41.64
Gene sequence:
>1806_bases ATGAATCGTAATACTCTCACTTTAACCACATTAGCGGTGGTCACTTCAGCATTGTTAGGTTGTAGCCAGCAATCAAATAT ACCAACATCAGAAAATACATTTTCAGCAATAGACACTTTTGGTATTCAATGTAAATCACAAGAAGAGCCAAAGCGCGGCA GTTCAGGCATTCGTGGACTGACATTCGTTGGTTCATCCATCGCTGATGCCCCCTTTGTTACCTCTGCAGCAGAGATCGTC AGTTACGACTCGTGTACTGATAAGTTGTATGTTGTAAACGCTCAAGCCAAAAAAATTGATGTATTAACCCTTGATGCCAA TAGCCAACCAAAGGCGGCAGGGTATATTGATCTTCAATCAGCAGCGAAGCGTTCTGGTATTGAGATTGGTGCAGCAAACA GTGTCTCTGCTCATCATGGGTTAGTTGCTGTTGCGGTTGAAAACAAAGATAAACAGAAGAATGGCATTATTGCTTTGTTC CGATCGGATTCTCTTGAACTACTCACGACATACCCCGCAGGTGCTTTGCCTGATATGGTGAGTTTTTCCAAAGACGGTCG TTATATTGCAGCAGCGAATGAAGGGGAGCCGAGTGCCGATTATTCAATTGATCCAGAAGGCAGCGTAACGTTAATCGATA TTGCTAATGGCCCATTAAATGCGTCAGTTATTCAACTTGATTTTAATGCGTTTGATATGGGCGGCTCGCGTCATTCAGAG TTAACAGATAAAGTTCGTATTTCTGCACCGACGGCAAGCGTTTCTCAAGATCTTGAGCCTGAATATTTAACTTTTTCAGA TAACGGTAAGTTGTATGTCGCATTACAAGAGAACAATGCATTAGCCGCGATTGATGTAGAAAGTGCATCGATTGATGGTA TTTTCGGTTTGGGTGGAAAATCATGGGAAAACGCTCAATTAGACGCTTCAAATAAAGATAAAACACTAGGAAATTTCCAA AATTACCCAATGCTTGAAGGGTTGTATATGCCAGACAGCATCACAAGTTATAGCGTTAATGGTAATACTTATATTGTGAC GGCTAACGAAGGTGATGGCCGAGAATATGGGGTCCAAACAACCCAGAAACAGTGTGATGAAAAAGCGTATGAGTGGGATG GAGATGACTACAAGGGCACTGCCGAATATGCGACTAAACAAGATTTTTGTATTGCTTACGTTGATGAGATTCGTGGTAAA AAATTAGATGTTGATAATAATCATCCATTAGCATCGGCATTGAAAGATAAAAATCAGCTAGCCCGTTTAAAAGTGGTTAA GCCGCAAGGCATGTTAGCGGCTGATGAAAAAGTACAAGCGTTTGGCAGTCGTTCATTCTCTATATGGGATGAATCTGGTG AATTTGTTTTTGATAGCGGCGATGAATTTGCTCGTATCGTGTTTGAGAAGAATAAAGAAAACTTCAATAGTACGAATGAT AATAACAGCAGTGCTGATGACCGCAGTGATGACAAAGGTGCCGAGCCAGAAGCGATTGAGGTAGCAAGTATTAATGGTCG TCAATATGCATTTATTGGCCTAGAGCGTCAAGGCGGTGTGATGGTATACGACGTAACAAAACCGAAAGAATCTCGCTTTA TTACGTATGTGAATAATCGTAATTTTGATGAACCAGTGTGTACCCAAGTTGATGCCGAGGGCGAATGCCAAAATGGGATC TACAATCCGAAAGCAGGGGATTTAGGGCCTGAATCCATTAAGTACTTTACTCGTTTAGGTGATCATTTTATCGCCGTGGG TAATGAAGTCAGTGGGACGACTTCTGTGTACCGTATCGATATGTAA
Upstream 100 bases:
>100_bases CGAGCTATTGCCTTTTTGTCTTTAATTCGCAATAAATCCGAAAACAAACTGTCACATAACCATTCTATGATCGCCAAATC AAATTGATCATGGAGGATAT
Downstream 100 bases:
>100_bases TTTCCCTCTATAATAAAAGTAAAACAGAGAGAAAGGCAATCAGCGTGTGTTGGTTGCCTTTTTTGTTTTTACAAAATTAG ATAGACACAATAACTTAACA
Product: hypothetical protein
Products: NA
Alternate protein names: Alkaline Phosphatase-Like Protein; 5-Nucleotidase Domain Protein; 5-Nucleotidase Domain-Containing Protein; Transcriptional Regulator MerR Family Protein; MerR Family Transcriptional Regulator; CHU Large Protein; LPXTG-Motif Cell Wall Anchor Domain Protein; 5-Nucleotidase C-Terminal Domain Protein; Collagen Triple Helix Repeat Protein; 5-Nucleotidase/2' 3'-Cyclic Phosphodiesterase; Atypical Alkaline Phosphatase With Phytase-Like Insertion; Metallophosphoesterase; PEP-CTERM Exosortase Interaction Domain Protein; Ig Domain Domain Protein; Endonuclease/Exonuclease/Phosphatase; Ig Family Protein; Secreted Protein
Number of amino acids: Translated: 601; Mature: 601
Protein sequence:
>601_residues MNRNTLTLTTLAVVTSALLGCSQQSNIPTSENTFSAIDTFGIQCKSQEEPKRGSSGIRGLTFVGSSIADAPFVTSAAEIV SYDSCTDKLYVVNAQAKKIDVLTLDANSQPKAAGYIDLQSAAKRSGIEIGAANSVSAHHGLVAVAVENKDKQKNGIIALF RSDSLELLTTYPAGALPDMVSFSKDGRYIAAANEGEPSADYSIDPEGSVTLIDIANGPLNASVIQLDFNAFDMGGSRHSE LTDKVRISAPTASVSQDLEPEYLTFSDNGKLYVALQENNALAAIDVESASIDGIFGLGGKSWENAQLDASNKDKTLGNFQ NYPMLEGLYMPDSITSYSVNGNTYIVTANEGDGREYGVQTTQKQCDEKAYEWDGDDYKGTAEYATKQDFCIAYVDEIRGK KLDVDNNHPLASALKDKNQLARLKVVKPQGMLAADEKVQAFGSRSFSIWDESGEFVFDSGDEFARIVFEKNKENFNSTND NNSSADDRSDDKGAEPEAIEVASINGRQYAFIGLERQGGVMVYDVTKPKESRFITYVNNRNFDEPVCTQVDAEGECQNGI YNPKAGDLGPESIKYFTRLGDHFIAVGNEVSGTTSVYRIDM
Sequences:
>Translated_601_residues MNRNTLTLTTLAVVTSALLGCSQQSNIPTSENTFSAIDTFGIQCKSQEEPKRGSSGIRGLTFVGSSIADAPFVTSAAEIV SYDSCTDKLYVVNAQAKKIDVLTLDANSQPKAAGYIDLQSAAKRSGIEIGAANSVSAHHGLVAVAVENKDKQKNGIIALF RSDSLELLTTYPAGALPDMVSFSKDGRYIAAANEGEPSADYSIDPEGSVTLIDIANGPLNASVIQLDFNAFDMGGSRHSE LTDKVRISAPTASVSQDLEPEYLTFSDNGKLYVALQENNALAAIDVESASIDGIFGLGGKSWENAQLDASNKDKTLGNFQ NYPMLEGLYMPDSITSYSVNGNTYIVTANEGDGREYGVQTTQKQCDEKAYEWDGDDYKGTAEYATKQDFCIAYVDEIRGK KLDVDNNHPLASALKDKNQLARLKVVKPQGMLAADEKVQAFGSRSFSIWDESGEFVFDSGDEFARIVFEKNKENFNSTND NNSSADDRSDDKGAEPEAIEVASINGRQYAFIGLERQGGVMVYDVTKPKESRFITYVNNRNFDEPVCTQVDAEGECQNGI YNPKAGDLGPESIKYFTRLGDHFIAVGNEVSGTTSVYRIDM >Mature_601_residues MNRNTLTLTTLAVVTSALLGCSQQSNIPTSENTFSAIDTFGIQCKSQEEPKRGSSGIRGLTFVGSSIADAPFVTSAAEIV SYDSCTDKLYVVNAQAKKIDVLTLDANSQPKAAGYIDLQSAAKRSGIEIGAANSVSAHHGLVAVAVENKDKQKNGIIALF RSDSLELLTTYPAGALPDMVSFSKDGRYIAAANEGEPSADYSIDPEGSVTLIDIANGPLNASVIQLDFNAFDMGGSRHSE LTDKVRISAPTASVSQDLEPEYLTFSDNGKLYVALQENNALAAIDVESASIDGIFGLGGKSWENAQLDASNKDKTLGNFQ NYPMLEGLYMPDSITSYSVNGNTYIVTANEGDGREYGVQTTQKQCDEKAYEWDGDDYKGTAEYATKQDFCIAYVDEIRGK KLDVDNNHPLASALKDKNQLARLKVVKPQGMLAADEKVQAFGSRSFSIWDESGEFVFDSGDEFARIVFEKNKENFNSTND NNSSADDRSDDKGAEPEAIEVASINGRQYAFIGLERQGGVMVYDVTKPKESRFITYVNNRNFDEPVCTQVDAEGECQNGI YNPKAGDLGPESIKYFTRLGDHFIAVGNEVSGTTSVYRIDM
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 65083; Mature: 65083
Theoretical pI: Translated: 4.30; Mature: 4.30
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNRNTLTLTTLAVVTSALLGCSQQSNIPTSENTFSAIDTFGIQCKSQEEPKRGSSGIRGL CCCCEEEEHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCEEECCCCCCCCCCCCCCEE TFVGSSIADAPFVTSAAEIVSYDSCTDKLYVVNAQAKKIDVLTLDANSQPKAAGYIDLQS EEECCCCCCCCCHHHHHHHHCCCCCCCEEEEEECCCCEEEEEEECCCCCCCCCEEEEHHH AAKRSGIEIGAANSVSAHHGLVAVAVENKDKQKNGIIALFRSDSLELLTTYPAGALPDMV HHHHCCCEEECCCCCCCCCCEEEEEECCCCCCCCCEEEEEECCCEEEEEECCCCCCCHHH SFSKDGRYIAAANEGEPSADYSIDPEGSVTLIDIANGPLNASVIQLDFNAFDMGGSRHSE HHCCCCCEEEEECCCCCCCCCEECCCCCEEEEEECCCCCCCEEEEEECCEEECCCCCCCC LTDKVRISAPTASVSQDLEPEYLTFSDNGKLYVALQENNALAAIDVESASIDGIFGLGGK CCCEEEEECCCCHHHCCCCCCEEEECCCCEEEEEEECCCEEEEEEECCCCCCEEEECCCC SWENAQLDASNKDKTLGNFQNYPMLEGLYMPDSITSYSVNGNTYIVTANEGDGREYGVQT CCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCEEEEECCCEEEEECCCCCCCCCCCCH TQKQCDEKAYEWDGDDYKGTAEYATKQDFCIAYVDEIRGKKLDVDNNHPLASALKDKNQL HHHHHHHHCCCCCCCCCCCCHHHCCCCCEEEEEEHHHCCCEECCCCCCCHHHHHHCCCCE ARLKVVKPQGMLAADEKVQAFGSRSFSIWDESGEFVFDSGDEFARIVFEKNKENFNSTND EEEEEECCCCCEECCHHHHHHCCCEEEEECCCCCEEEECCCCEEEEEEECCCCCCCCCCC NNSSADDRSDDKGAEPEAIEVASINGRQYAFIGLERQGGVMVYDVTKPKESRFITYVNNR CCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEECCCCEEEEEECCCCCCEEEEEECCC NFDEPVCTQVDAEGECQNGIYNPKAGDLGPESIKYFTRLGDHFIAVGNEVSGTTSVYRID CCCCHHHEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCEEEEECCCCCCCEEEEEEE M C >Mature Secondary Structure MNRNTLTLTTLAVVTSALLGCSQQSNIPTSENTFSAIDTFGIQCKSQEEPKRGSSGIRGL CCCCEEEEHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCEEECCCCCCCCCCCCCCEE TFVGSSIADAPFVTSAAEIVSYDSCTDKLYVVNAQAKKIDVLTLDANSQPKAAGYIDLQS EEECCCCCCCCCHHHHHHHHCCCCCCCEEEEEECCCCEEEEEEECCCCCCCCCEEEEHHH AAKRSGIEIGAANSVSAHHGLVAVAVENKDKQKNGIIALFRSDSLELLTTYPAGALPDMV HHHHCCCEEECCCCCCCCCCEEEEEECCCCCCCCCEEEEEECCCEEEEEECCCCCCCHHH SFSKDGRYIAAANEGEPSADYSIDPEGSVTLIDIANGPLNASVIQLDFNAFDMGGSRHSE HHCCCCCEEEEECCCCCCCCCEECCCCCEEEEEECCCCCCCEEEEEECCEEECCCCCCCC LTDKVRISAPTASVSQDLEPEYLTFSDNGKLYVALQENNALAAIDVESASIDGIFGLGGK CCCEEEEECCCCHHHCCCCCCEEEECCCCEEEEEEECCCEEEEEEECCCCCCEEEECCCC SWENAQLDASNKDKTLGNFQNYPMLEGLYMPDSITSYSVNGNTYIVTANEGDGREYGVQT CCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCEEEEECCCEEEEECCCCCCCCCCCCH TQKQCDEKAYEWDGDDYKGTAEYATKQDFCIAYVDEIRGKKLDVDNNHPLASALKDKNQL HHHHHHHHCCCCCCCCCCCCHHHCCCCCEEEEEEHHHCCCEECCCCCCCHHHHHHCCCCE ARLKVVKPQGMLAADEKVQAFGSRSFSIWDESGEFVFDSGDEFARIVFEKNKENFNSTND EEEEEECCCCCEECCHHHHHHCCCEEEEECCCCCEEEECCCCEEEEEEECCCCCCCCCCC NNSSADDRSDDKGAEPEAIEVASINGRQYAFIGLERQGGVMVYDVTKPKESRFITYVNNR CCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEECCCCEEEEEECCCCCCEEEEEECCC NFDEPVCTQVDAEGECQNGIYNPKAGDLGPESIKYFTRLGDHFIAVGNEVSGTTSVYRID CCCCHHHEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCEEEEECCCCCCCEEEEEEE M C
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA