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The map label for this gene is yiaN [C]

Identifier: 209694774

GI number: 209694774

Start: 1339925

End: 1341223

Strand: Direct

Name: yiaN [C]

Synonym: VSAL_I1230

Alternate gene names: 209694774

Gene position: 1339925-1341223 (Clockwise)

Preceding gene: 209694773

Following gene: 209694775

Centisome position: 40.3

GC content: 41.49

Gene sequence:

>1299_bases
ATGGATATTATGACCGATAAAAATCAACCTGATATAGAGCATTTACCTCATGAAAAAACGGTGACAGTGTTCGGGTACCT
TATTCTAGGGATTGCTGTAGCACTCTCAATGTTTCAAATTTGGCAGGGCATTAGCTCGACCATTTCTGCGACGTATTTTC
GCCCTATACATCTTTGTTGGGTGCTTGTTCTTATTTTTTTGCATTACCCATTAATTAGTAATCGAAAAAGCCATTTATAT
CTTGTAGGCCGAGTCGTTGATCTCGCTTTATGTGGCCTGATTGTCTTCGCTGCTTATCGAATGTCGATATTTGATTACAA
CGACATCAACCATCTATTCTATGGATTACAACTGTCCGATATGATTGCAGGGTGTTCATTGATTCTCTTATTAATGGAAG
GATGTCGTAGAACGGTTGGTTGGGTGATGGTGCTTATCGCGGTATTATTCTTATCTTACAGTGCGTTTGGTGACTTATTA
CCGAGTGGCTTTGCGATAAAGTCGTACTCTCTGCAAGAACTCATTCAATTTCAAATCTTTTCGGCTAACGGTATTTTTGG
TTCAGCCTTAGGCATTGCAGCAACAACGGTTTTTATCTTTGTTTTATTTGGGGCATTTTTAGAAGTCACAGGAGCAGGAA
AATTCTTTATTGATTTAGCATTCTCTATTGCGGGTAAATATCGTGGTGGCCCAGCTAAAGCAGCCGTATTGGCCTCGGCA
GGGTTAGGATCTATTTCAGGCTCAGCGATAGCAAACACGGTAACCACCGGCTCAATTACCATTCCTATGATGAAAAAGCT
GGGTTATAAACCAGAACAAGCTGCAGGGATTGAAGCGGCGGCCTCAACGGGCGGGCAAATTATGCCACCAATCATGGGGG
CAGGTGCGTTTGTAATGGCACAGTTTACCGGTGTGCCTTACAGCGAAATCATGTTGGCTTCTATCGCACCTGCGATTTTG
TATTTCTTCTGTACTTTGTTATACGTACATTTAATGGCGTGCAAATTAAACCTAAAAGCAGTGAGTCGAACAGAAGCCGT
AATGAGCGTGATGAAAGATGGCGCGCACCATTTAATTCCATTAGCACTGATCACAACATTACTTATGATGGCTTACTCTC
CATTATTGGTCGGTGTGGCTATTGGCCTTTTTTACCATTCCACTAATTATGCTGAACCCTTTTGGCGCTGGTTTTCTTGG
TATTGTTATTATGGTCGGTTTGATTTTAGTTCAGTGGAAAGGCAGAGGGCGATCCAATCAGAGTTAGTCTTTTATCATTA
CATAACTCATCTTAATTAA

Upstream 100 bases:

>100_bases
ATTCAATCATAAAATAATAAGCGCCAAATACACGCAAAACGAAAGGGTAAGTGTCTCGCTTGCCTTTTCTTCTTTTCTGA
CTTTATCCAAAGGCATTAAT

Downstream 100 bases:

>100_bases
AATCCTCTTTGGTTATCAGAATCAAAGGGGATTTTTTGTATTTATTGCTGAATATTGAGATCTATAAGTCGAAGAATCAC
CATTCAACTGCTACCTTTTA

Product: DctM-like transport protein

Products: NA

Alternate protein names: Trap Transporter 4tm/12tm Fusion Protein; TRAP Transporter; TRAP-Type Transport System Fused Permease Component; TRAP-Type Transport System Permease Protein; TRAP-Type Transport System Permease Component; TRAP-Type Transporter 4TM/12TM Fusion Protein; TRAP-T Family Transporter With Fused DctQ/DctM Subunits; TRAP-Type Transporter Permease Component; Permease; TRAP-Type Transport System Permease; TRAP Transporter Large Permease; TRAP Transporter 4TM/12TM Fusion Family; TRAP-Type Transporter Fused Permeases; C4-Dicarboxylate Transporter; TRAP Type Transporter Protein; Inner Membrane Protein; TRAP-T Family Transporter Fused Inner Membrane Subunits; TRAP Transporter Transmembrane Protein; Integral Membrane Protein; Transcriptional Regulator DeoR Family; Trap Family Transporter; N-Carbamoyl-L-Amino Acid Hydrolase; TRAP-Type Transport System Fused Permease Components; 4TM/12TM TRAP Transporter; TRAP-Type Transport System; TRAP Transporter Membrane-Spanning Component

Number of amino acids: Translated: 432; Mature: 432

Protein sequence:

>432_residues
MDIMTDKNQPDIEHLPHEKTVTVFGYLILGIAVALSMFQIWQGISSTISATYFRPIHLCWVLVLIFLHYPLISNRKSHLY
LVGRVVDLALCGLIVFAAYRMSIFDYNDINHLFYGLQLSDMIAGCSLILLLMEGCRRTVGWVMVLIAVLFLSYSAFGDLL
PSGFAIKSYSLQELIQFQIFSANGIFGSALGIAATTVFIFVLFGAFLEVTGAGKFFIDLAFSIAGKYRGGPAKAAVLASA
GLGSISGSAIANTVTTGSITIPMMKKLGYKPEQAAGIEAAASTGGQIMPPIMGAGAFVMAQFTGVPYSEIMLASIAPAIL
YFFCTLLYVHLMACKLNLKAVSRTEAVMSVMKDGAHHLIPLALITTLLMMAYSPLLVGVAIGLFYHSTNYAEPFWRWFSW
YCYYGRFDFSSVERQRAIQSELVFYHYITHLN

Sequences:

>Translated_432_residues
MDIMTDKNQPDIEHLPHEKTVTVFGYLILGIAVALSMFQIWQGISSTISATYFRPIHLCWVLVLIFLHYPLISNRKSHLY
LVGRVVDLALCGLIVFAAYRMSIFDYNDINHLFYGLQLSDMIAGCSLILLLMEGCRRTVGWVMVLIAVLFLSYSAFGDLL
PSGFAIKSYSLQELIQFQIFSANGIFGSALGIAATTVFIFVLFGAFLEVTGAGKFFIDLAFSIAGKYRGGPAKAAVLASA
GLGSISGSAIANTVTTGSITIPMMKKLGYKPEQAAGIEAAASTGGQIMPPIMGAGAFVMAQFTGVPYSEIMLASIAPAIL
YFFCTLLYVHLMACKLNLKAVSRTEAVMSVMKDGAHHLIPLALITTLLMMAYSPLLVGVAIGLFYHSTNYAEPFWRWFSW
YCYYGRFDFSSVERQRAIQSELVFYHYITHLN
>Mature_432_residues
MDIMTDKNQPDIEHLPHEKTVTVFGYLILGIAVALSMFQIWQGISSTISATYFRPIHLCWVLVLIFLHYPLISNRKSHLY
LVGRVVDLALCGLIVFAAYRMSIFDYNDINHLFYGLQLSDMIAGCSLILLLMEGCRRTVGWVMVLIAVLFLSYSAFGDLL
PSGFAIKSYSLQELIQFQIFSANGIFGSALGIAATTVFIFVLFGAFLEVTGAGKFFIDLAFSIAGKYRGGPAKAAVLASA
GLGSISGSAIANTVTTGSITIPMMKKLGYKPEQAAGIEAAASTGGQIMPPIMGAGAFVMAQFTGVPYSEIMLASIAPAIL
YFFCTLLYVHLMACKLNLKAVSRTEAVMSVMKDGAHHLIPLALITTLLMMAYSPLLVGVAIGLFYHSTNYAEPFWRWFSW
YCYYGRFDFSSVERQRAIQSELVFYHYITHLN

Specific function: Unknown

COG id: COG4666

COG function: function code R; TRAP-type uncharacterized transport system, fused permease components

Gene ontology:

Cell location: Integral Membrane Protein. Inner Membrane [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 47513; Mature: 47513

Theoretical pI: Translated: 8.06; Mature: 8.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDIMTDKNQPDIEHLPHEKTVTVFGYLILGIAVALSMFQIWQGISSTISATYFRPIHLCW
CCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VLVLIFLHYPLISNRKSHLYLVGRVVDLALCGLIVFAAYRMSIFDYNDINHLFYGLQLSD
HHHHHHHHCCHHCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCHHHH
MIAGCSLILLLMEGCRRTVGWVMVLIAVLFLSYSAFGDLLPSGFAIKSYSLQELIQFQIF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHE
SANGIFGSALGIAATTVFIFVLFGAFLEVTGAGKFFIDLAFSIAGKYRGGPAKAAVLASA
ECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHC
GLGSISGSAIANTVTTGSITIPMMKKLGYKPEQAAGIEAAASTGGQIMPPIMGAGAFVMA
CCCCCCCCHHHHHCCCCCEEHHHHHHCCCCCCHHCCCHHHHCCCCCCCCHHHCCCHHHHH
QFTGVPYSEIMLASIAPAILYFFCTLLYVHLMACKLNLKAVSRTEAVMSVMKDGAHHLIP
HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
LALITTLLMMAYSPLLVGVAIGLFYHSTNYAEPFWRWFSWYCYYGRFDFSSVERQRAIQS
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHH
ELVFYHYITHLN
HHHHHHHHHHCC
>Mature Secondary Structure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HHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA