Definition Aliivibrio salmonicida LFI1238 chromosome 1, complete genome.
Accession NC_011312
Length 3,325,165

Click here to switch to the map view.

The map label for this gene is 209694766

Identifier: 209694766

GI number: 209694766

Start: 1329187

End: 1331943

Strand: Reverse

Name: 209694766

Synonym: VSAL_I1222

Alternate gene names: NA

Gene position: 1331943-1329187 (Counterclockwise)

Preceding gene: 209694767

Following gene: 209694762

Centisome position: 40.06

GC content: 40.88

Gene sequence:

>2757_bases
ATGAAGATATTTCTTACTGGATTAACGTTATTGATTGCAGTTCCGACTCTTGCGCATTCAGCGCCATTAGTAACGCCTAA
TCAAGCAGGTGTTGCACAAGATCAGGATTACTACACCCAAGACGTGCGTAATACTCGCCTTATTTTCACCGAAGAAAACA
AACAGCACGCAGAGCATGCTGCAAGTATTGAAAGCATATTACAGCCAGCTTATGAGGACACCTTTGGGTATCAAATGGAT
GACCGTTTAAATGTCGGTTTGATGTCATCTTACAATCAAATCGCTAATGGTTTTTCAACTCAATATCCGCTCAATCGCCA
AATCAACTATATGGGTGGCGCACAACTTCCCGACTATTTCTCATCAAGCTCTTGGCTCGATACCTTGTTATTTCATGAAA
CGGCTCATGATTATCAAATGAACGCCAAAGACAATGTAGTCTCTAAGTCGATGTTTGCAGTTCTTCACAATGGTTCTATT
GGACCTATTGGTCTTATTCCTGCGGTATTACCTAACTCAACCGCTTCAAGCTTTATGCTTGAGGGTAATGCGGTTTTAAA
TGAATCTTGGCATGGTCAAGGGGGGCGACTTTATAGTGGTCGATACCGAGCAATGACACATGTACACGCTAAAGCCGGTA
ACTTATCGCCAGAGCGCCTTTATAACGACAGCCTTTTCTTCCCGTATGGAGAGAGTACTTATGTTTTCGGTTCTCAGTAC
CAATATTATCTAGCAGAAACTTACGGCCTAGATGTCACTAATAAGTTCTTCAAAAACCGCTCTCAGCATTGGTTATGGCC
TTTCCAAGTCAACAAACCAATGAAACAAACGGTTGGAGAAGATTTTGATACCACGTTTGCGGCGTGGGTTAAACAAGAAG
CCCAAGAAGCAAAAGAGATGCAATTGGCGCAAGGGGAAATCGTTGCGCGTTCTAAATACTATGGTGAACTCAACACCCAA
CAAGGCAATATTCTTTTCTTAACCAACCCTACCGCGGTTCGTGCGCCAACGCTTGTTCATTATGATTTAACCAATAATGA
AGTAACAAAAGAAAGCAGCAGCCTAGATATGGGGAAAGTCTATTACAACCAAGATAAATACTATACGGTTTCAGGACGTC
GTACTTCGGTTTGGCGTACGACTCAAGGTTTATTTAATAACGATGCTCAAATTAAAGAAGGCAGCGAAGGCCGAGTTCAT
CAAGGCTATATGAGCAACGGCAAAGACGTGTATTTCAAAACCACGGAGTCTTTTGTTCAACCTCAACTCTATGTTGGCGA
CAAGTTTTACAGCGCTGTTAATTCATCGGTTTTAGTTAAAAATGACAACCTCTATTACTTTGTCCAAAAAGGCAATGACC
GCACGTTATATCGCAACAAAGAAGCGCTCTTAACCCTACCCGCTTTCTATACCATCGTTAAAGATGTGGATAGCTCAGGC
AGAGTTTACTTTATCGCAAACACTGAAACAGGTAGCTCTCTTTATCGAACTAAAGATGGCAAAGTTGAGCGTGTGCTTAG
TGCAGACAACGTGATTGATGCCCGATTGATTAATGATGACAAGGTACTAGCAACCGCGATCTCTGCAGATGATTACTATT
ATGTTGTCGAAGATATGGAGATAACGGAAGAAGCGCCTTATCAAGTTAAGCTTTTTTGGGATGACAAAGGCGGTCTAGCC
GATCAACAACAACAAAAATTAGCCAACCTTGAAGACAAACAGCTCAATACAGACACCTCTTATGGACTGTTCAACAACAT
TCATTACAGCCGAGGTGCATTAACGGTTGGAGCAGCAACAGAGAAAGACGATAACGGCGAGAGTAAACAAAAACTACGTT
ATAACGCGACGTTTGAGTTTACTGATCCTCTAGAGCGCAGCACCTATAGTCTTTGGGCAATGAATGATGATGAATACAGT
GATTTGATCGGTGCTGGTTTCAGCAATAATCAATTTTTCATTATGGGTGGTGTTCGTGCTTATTATGTCTTAAATGATAA
TTACTCTGATAATAATATCCAAAAAGATCAGACTCGCAGTAGCGGTGTTGCTGCTCAGTTACGTTTGCCTTTCCTGCAAA
CAGGGTTTTGGAATGCGGAAATCTCGAGTAATTTCTATCAAGATTACAAATTAGATGAACGTGAACCTTTATCTGCTCAG
TTAGATATTTCTCGAACAGAGCATTACGGTAATAGTTGGTTATTAAACAAAGAAGCCGCGGTTTCACTCTATGGCGTTCA
AGACCGACACGATGCTATTCACGGTGCTTCGCTGTCTTTTGGCACTGATTTACCTTCAGAGTTTTACATTAACTTATCAG
GAAAGTATTCAGGCAGTGATACAAACAAAGCAGGGATATATGAGCGTCGAGGTGTAGAGCTAACACAAGGCAGTGATTTT
ATAAATAACGATCCTAGTAGCTTTATTATGCCGTCACTTAAAGACGATGCTTTTGCTGAAACTGCTAGCTTGGCTGAGTT
AACACTTTCAAAAGTGATTAACCTATCAGCTTATTCTTTCAAAGGCCCAATATCATTGCGTCGTGAGATGATTGAATTTT
CTTACCGACGTTATGATTTAGGCAATGTAAATACTCTGGGTGACGTAGCTATTAACCAAGGCGTTGTTGGGCTTCATTTT
GATACCTTAATAATGAATGTATTGCCTATTGGATTTTACACTCAATATATTCACAATGATGAAAACCCAATCACTGATAA
GAACAGCTTCCAAGCCGGATTATCCGTTCCATTATAA

Upstream 100 bases:

>100_bases
TTATTTATCTCACCTAATGTCATTCCATTGAATTTTTCATCGACCGTTTGTTTAAATCAATATTAGATAACACAACCTTA
AACATATTAAGAGAATTTAA

Downstream 100 bases:

>100_bases
TCGCTAGTCTATAAGTACCAAAAATCCCCTTACTCTCAACAAATAAGGGGATTTTTGTATTTATGACGAAACTTATTCAG
TGCGTATTTGAAGATAAATT

Product: outer membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 918; Mature: 918

Protein sequence:

>918_residues
MKIFLTGLTLLIAVPTLAHSAPLVTPNQAGVAQDQDYYTQDVRNTRLIFTEENKQHAEHAASIESILQPAYEDTFGYQMD
DRLNVGLMSSYNQIANGFSTQYPLNRQINYMGGAQLPDYFSSSSWLDTLLFHETAHDYQMNAKDNVVSKSMFAVLHNGSI
GPIGLIPAVLPNSTASSFMLEGNAVLNESWHGQGGRLYSGRYRAMTHVHAKAGNLSPERLYNDSLFFPYGESTYVFGSQY
QYYLAETYGLDVTNKFFKNRSQHWLWPFQVNKPMKQTVGEDFDTTFAAWVKQEAQEAKEMQLAQGEIVARSKYYGELNTQ
QGNILFLTNPTAVRAPTLVHYDLTNNEVTKESSSLDMGKVYYNQDKYYTVSGRRTSVWRTTQGLFNNDAQIKEGSEGRVH
QGYMSNGKDVYFKTTESFVQPQLYVGDKFYSAVNSSVLVKNDNLYYFVQKGNDRTLYRNKEALLTLPAFYTIVKDVDSSG
RVYFIANTETGSSLYRTKDGKVERVLSADNVIDARLINDDKVLATAISADDYYYVVEDMEITEEAPYQVKLFWDDKGGLA
DQQQQKLANLEDKQLNTDTSYGLFNNIHYSRGALTVGAATEKDDNGESKQKLRYNATFEFTDPLERSTYSLWAMNDDEYS
DLIGAGFSNNQFFIMGGVRAYYVLNDNYSDNNIQKDQTRSSGVAAQLRLPFLQTGFWNAEISSNFYQDYKLDEREPLSAQ
LDISRTEHYGNSWLLNKEAAVSLYGVQDRHDAIHGASLSFGTDLPSEFYINLSGKYSGSDTNKAGIYERRGVELTQGSDF
INNDPSSFIMPSLKDDAFAETASLAELTLSKVINLSAYSFKGPISLRREMIEFSYRRYDLGNVNTLGDVAINQGVVGLHF
DTLIMNVLPIGFYTQYIHNDENPITDKNSFQAGLSVPL

Sequences:

>Translated_918_residues
MKIFLTGLTLLIAVPTLAHSAPLVTPNQAGVAQDQDYYTQDVRNTRLIFTEENKQHAEHAASIESILQPAYEDTFGYQMD
DRLNVGLMSSYNQIANGFSTQYPLNRQINYMGGAQLPDYFSSSSWLDTLLFHETAHDYQMNAKDNVVSKSMFAVLHNGSI
GPIGLIPAVLPNSTASSFMLEGNAVLNESWHGQGGRLYSGRYRAMTHVHAKAGNLSPERLYNDSLFFPYGESTYVFGSQY
QYYLAETYGLDVTNKFFKNRSQHWLWPFQVNKPMKQTVGEDFDTTFAAWVKQEAQEAKEMQLAQGEIVARSKYYGELNTQ
QGNILFLTNPTAVRAPTLVHYDLTNNEVTKESSSLDMGKVYYNQDKYYTVSGRRTSVWRTTQGLFNNDAQIKEGSEGRVH
QGYMSNGKDVYFKTTESFVQPQLYVGDKFYSAVNSSVLVKNDNLYYFVQKGNDRTLYRNKEALLTLPAFYTIVKDVDSSG
RVYFIANTETGSSLYRTKDGKVERVLSADNVIDARLINDDKVLATAISADDYYYVVEDMEITEEAPYQVKLFWDDKGGLA
DQQQQKLANLEDKQLNTDTSYGLFNNIHYSRGALTVGAATEKDDNGESKQKLRYNATFEFTDPLERSTYSLWAMNDDEYS
DLIGAGFSNNQFFIMGGVRAYYVLNDNYSDNNIQKDQTRSSGVAAQLRLPFLQTGFWNAEISSNFYQDYKLDEREPLSAQ
LDISRTEHYGNSWLLNKEAAVSLYGVQDRHDAIHGASLSFGTDLPSEFYINLSGKYSGSDTNKAGIYERRGVELTQGSDF
INNDPSSFIMPSLKDDAFAETASLAELTLSKVINLSAYSFKGPISLRREMIEFSYRRYDLGNVNTLGDVAINQGVVGLHF
DTLIMNVLPIGFYTQYIHNDENPITDKNSFQAGLSVPL
>Mature_918_residues
MKIFLTGLTLLIAVPTLAHSAPLVTPNQAGVAQDQDYYTQDVRNTRLIFTEENKQHAEHAASIESILQPAYEDTFGYQMD
DRLNVGLMSSYNQIANGFSTQYPLNRQINYMGGAQLPDYFSSSSWLDTLLFHETAHDYQMNAKDNVVSKSMFAVLHNGSI
GPIGLIPAVLPNSTASSFMLEGNAVLNESWHGQGGRLYSGRYRAMTHVHAKAGNLSPERLYNDSLFFPYGESTYVFGSQY
QYYLAETYGLDVTNKFFKNRSQHWLWPFQVNKPMKQTVGEDFDTTFAAWVKQEAQEAKEMQLAQGEIVARSKYYGELNTQ
QGNILFLTNPTAVRAPTLVHYDLTNNEVTKESSSLDMGKVYYNQDKYYTVSGRRTSVWRTTQGLFNNDAQIKEGSEGRVH
QGYMSNGKDVYFKTTESFVQPQLYVGDKFYSAVNSSVLVKNDNLYYFVQKGNDRTLYRNKEALLTLPAFYTIVKDVDSSG
RVYFIANTETGSSLYRTKDGKVERVLSADNVIDARLINDDKVLATAISADDYYYVVEDMEITEEAPYQVKLFWDDKGGLA
DQQQQKLANLEDKQLNTDTSYGLFNNIHYSRGALTVGAATEKDDNGESKQKLRYNATFEFTDPLERSTYSLWAMNDDEYS
DLIGAGFSNNQFFIMGGVRAYYVLNDNYSDNNIQKDQTRSSGVAAQLRLPFLQTGFWNAEISSNFYQDYKLDEREPLSAQ
LDISRTEHYGNSWLLNKEAAVSLYGVQDRHDAIHGASLSFGTDLPSEFYINLSGKYSGSDTNKAGIYERRGVELTQGSDF
INNDPSSFIMPSLKDDAFAETASLAELTLSKVINLSAYSFKGPISLRREMIEFSYRRYDLGNVNTLGDVAINQGVVGLHF
DTLIMNVLPIGFYTQYIHNDENPITDKNSFQAGLSVPL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 103563; Mature: 103563

Theoretical pI: Translated: 4.82; Mature: 4.82

Prosite motif: PS00189 LIPOYL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIFLTGLTLLIAVPTLAHSAPLVTPNQAGVAQDQDYYTQDVRNTRLIFTEENKQHAEHA
CEEEEEHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHCCCCEEEEEEECCHHHHHHH
ASIESILQPAYEDTFGYQMDDRLNVGLMSSYNQIANGFSTQYPLNRQINYMGGAQLPDYF
HHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCEEECCCCCCCCCC
SSSSWLDTLLFHETAHDYQMNAKDNVVSKSMFAVLHNGSIGPIGLIPAVLPNSTASSFML
CCCHHHHHHHHHHCCCCEECCCCCCHHHHHHHHEEECCCCCCHHHHHHHCCCCCCCEEEE
EGNAVLNESWHGQGGRLYSGRYRAMTHVHAKAGNLSPERLYNDSLFFPYGESTYVFGSQY
ECCEEECCCCCCCCCEEECCCEEEEEEEEECCCCCCHHHHCCCCEEEECCCCEEEECCCE
QYYLAETYGLDVTNKFFKNRSQHWLWPFQVNKPMKQTVGEDFDTTFAAWVKQEAQEAKEM
EEEEEEEECCCHHHHHHHCCCCCEEEEEECCCCHHHHCCCCCCHHHHHHHHHHHHHHHHH
QLAQGEIVARSKYYGELNTQQGNILFLTNPTAVRAPTLVHYDLTNNEVTKESSSLDMGKV
HHHCCCEEEEEEECCCCCCCCCCEEEEECCCCCCCCEEEEEECCCCCCCCCCCCCCCCEE
YYNQDKYYTVSGRRTSVWRTTQGLFNNDAQIKEGSEGRVHQGYMSNGKDVYFKTTESFVQ
EECCCCEEEECCCEEEEEEEHHHHCCCCCCCCCCCCCCEEECCCCCCCEEEEEEHHHHHC
PQLYVGDKFYSAVNSSVLVKNDNLYYFVQKGNDRTLYRNKEALLTLPAFYTIVKDVDSSG
CEEEECHHHHHHCCCEEEEECCCEEEEEEECCCCEEEECCCCEEEHHHHHHHHHHCCCCC
RVYFIANTETGSSLYRTKDGKVERVLSADNVIDARLINDDKVLATAISADDYYYVVEDME
CEEEEEECCCCCCEEECCCCCEEEECCCCCCEEEEEECCCCEEEEEECCCCEEEEEECCE
ITEEAPYQVKLFWDDKGGLADQQQQKLANLEDKQLNTDTSYGLFNNIHYSRGALTVGAAT
ECCCCCEEEEEEECCCCCCCCHHHHHHHCCCCCCCCCCCCCCHHCCCEECCCEEEECCCC
EKDDNGESKQKLRYNATFEFTDPLERSTYSLWAMNDDEYSDLIGAGFSNNQFFIMGGVRA
CCCCCCCCHHEEEEEEEEEECCCCCCCEEEEEEECCCCHHHHHCCCCCCCEEEEEECCEE
YYVLNDNYSDNNIQKDQTRSSGVAAQLRLPFLQTGFWNAEISSNFYQDYKLDEREPLSAQ
EEEECCCCCCCCCCCCCCCCCCCEEEEECCHHHCCCCCCCCCCCCHHCCCCCCCCCCCEE
LDISRTEHYGNSWLLNKEAAVSLYGVQDRHDAIHGASLSFGTDLPSEFYINLSGKYSGSD
EEEEHHHCCCCEEEECCCCEEEEEECCCHHCHHCCCCEECCCCCCCEEEEEEECEECCCC
TNKAGIYERRGVELTQGSDFINNDPSSFIMPSLKDDAFAETASLAELTLSKVINLSAYSF
CCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEE
KGPISLRREMIEFSYRRYDLGNVNTLGDVAINQGVVGLHFDTLIMNVLPIGFYTQYIHND
CCCHHHHHHHHHHHHHEECCCCCCCCHHHHHCCCEEEEEHHHHHHHHHHHHHEEHHHCCC
ENPITDKNSFQAGLSVPL
CCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MKIFLTGLTLLIAVPTLAHSAPLVTPNQAGVAQDQDYYTQDVRNTRLIFTEENKQHAEHA
CEEEEEHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHCCCCEEEEEEECCHHHHHHH
ASIESILQPAYEDTFGYQMDDRLNVGLMSSYNQIANGFSTQYPLNRQINYMGGAQLPDYF
HHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCEEECCCCCCCCCC
SSSSWLDTLLFHETAHDYQMNAKDNVVSKSMFAVLHNGSIGPIGLIPAVLPNSTASSFML
CCCHHHHHHHHHHCCCCEECCCCCCHHHHHHHHEEECCCCCCHHHHHHHCCCCCCCEEEE
EGNAVLNESWHGQGGRLYSGRYRAMTHVHAKAGNLSPERLYNDSLFFPYGESTYVFGSQY
ECCEEECCCCCCCCCEEECCCEEEEEEEEECCCCCCHHHHCCCCEEEECCCCEEEECCCE
QYYLAETYGLDVTNKFFKNRSQHWLWPFQVNKPMKQTVGEDFDTTFAAWVKQEAQEAKEM
EEEEEEEECCCHHHHHHHCCCCCEEEEEECCCCHHHHCCCCCCHHHHHHHHHHHHHHHHH
QLAQGEIVARSKYYGELNTQQGNILFLTNPTAVRAPTLVHYDLTNNEVTKESSSLDMGKV
HHHCCCEEEEEEECCCCCCCCCCEEEEECCCCCCCCEEEEEECCCCCCCCCCCCCCCCEE
YYNQDKYYTVSGRRTSVWRTTQGLFNNDAQIKEGSEGRVHQGYMSNGKDVYFKTTESFVQ
EECCCCEEEECCCEEEEEEEHHHHCCCCCCCCCCCCCCEEECCCCCCCEEEEEEHHHHHC
PQLYVGDKFYSAVNSSVLVKNDNLYYFVQKGNDRTLYRNKEALLTLPAFYTIVKDVDSSG
CEEEECHHHHHHCCCEEEEECCCEEEEEEECCCCEEEECCCCEEEHHHHHHHHHHCCCCC
RVYFIANTETGSSLYRTKDGKVERVLSADNVIDARLINDDKVLATAISADDYYYVVEDME
CEEEEEECCCCCCEEECCCCCEEEECCCCCCEEEEEECCCCEEEEEECCCCEEEEEECCE
ITEEAPYQVKLFWDDKGGLADQQQQKLANLEDKQLNTDTSYGLFNNIHYSRGALTVGAAT
ECCCCCEEEEEEECCCCCCCCHHHHHHHCCCCCCCCCCCCCCHHCCCEECCCEEEECCCC
EKDDNGESKQKLRYNATFEFTDPLERSTYSLWAMNDDEYSDLIGAGFSNNQFFIMGGVRA
CCCCCCCCHHEEEEEEEEEECCCCCCCEEEEEEECCCCHHHHHCCCCCCCEEEEEECCEE
YYVLNDNYSDNNIQKDQTRSSGVAAQLRLPFLQTGFWNAEISSNFYQDYKLDEREPLSAQ
EEEECCCCCCCCCCCCCCCCCCCEEEEECCHHHCCCCCCCCCCCCHHCCCCCCCCCCCEE
LDISRTEHYGNSWLLNKEAAVSLYGVQDRHDAIHGASLSFGTDLPSEFYINLSGKYSGSD
EEEEHHHCCCCEEEECCCCEEEEEECCCHHCHHCCCCEECCCCCCCEEEEEEECEECCCC
TNKAGIYERRGVELTQGSDFINNDPSSFIMPSLKDDAFAETASLAELTLSKVINLSAYSF
CCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEE
KGPISLRREMIEFSYRRYDLGNVNTLGDVAINQGVVGLHFDTLIMNVLPIGFYTQYIHND
CCCHHHHHHHHHHHHHEECCCCCCCCHHHHHCCCEEEEEHHHHHHHHHHHHHEEHHHCCC
ENPITDKNSFQAGLSVPL
CCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA