| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is 209694762
Identifier: 209694762
GI number: 209694762
Start: 1324786
End: 1325310
Strand: Reverse
Name: 209694762
Synonym: VSAL_I1217
Alternate gene names: NA
Gene position: 1325310-1324786 (Counterclockwise)
Preceding gene: 209694766
Following gene: 209694758
Centisome position: 39.86
GC content: 34.29
Gene sequence:
>525_bases ATGACTATGCTTTCTGATATAACTCTTACTCCTTTTTCTAATTCATTAAATGTTGCCATTCATTTAATGACTAAAGCAAA AGCACATTTTGAGGCACAAAATCGAAATACAAATGACATCGTTGATCTTCAATTAGTTGATGATATGCTTCCTCTTTCAT TCCAAGTAAATTCAATTTGTAAGCATACTCTTGGGGCAACAAAAGCCGTATTAAGCGGTAACTTTTATATTCCATCACCT TTAGGTGAAATTGATTTTAATGGCTTAATTGAATTACTTCAAAATACACAAAAAGAGTTGAGTGCAATTACAGAAAATGA GGTAAATTCACGCTCAGGTGAAACCGTTATTTTCCACTATCCAGAACGACCAATGCCGTTTACTGCTGAGAATTTCATTA CCTCATTCTCAACACCAAATCTATACTTTCACCAGACCACGCTGTACAACTTACTTCGAAAAGAAGGCGTACCATTGAGT AAATTAGATTTCATTGGTGCTTTATCTCTTAGCCCTTCAGAATAA
Upstream 100 bases:
>100_bases TGATCGTTAGGTGGGCAATTAGTTCAGCCTTATCCAGAATTCAGGTTAATTATTATTTACCTACATTGAACTCACTTTCG TCATTAATAAAGGAACTCTC
Downstream 100 bases:
>100_bases AGTTCACAATAGCCAATTAAAAAAGCCCTGTTTAGCAATCACTAGACAGGGCTTAAATAGAACCAAGGTATTATTAATCG GTTGTTTTACTATCCAAGTC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 174; Mature: 173
Protein sequence:
>174_residues MTMLSDITLTPFSNSLNVAIHLMTKAKAHFEAQNRNTNDIVDLQLVDDMLPLSFQVNSICKHTLGATKAVLSGNFYIPSP LGEIDFNGLIELLQNTQKELSAITENEVNSRSGETVIFHYPERPMPFTAENFITSFSTPNLYFHQTTLYNLLRKEGVPLS KLDFIGALSLSPSE
Sequences:
>Translated_174_residues MTMLSDITLTPFSNSLNVAIHLMTKAKAHFEAQNRNTNDIVDLQLVDDMLPLSFQVNSICKHTLGATKAVLSGNFYIPSP LGEIDFNGLIELLQNTQKELSAITENEVNSRSGETVIFHYPERPMPFTAENFITSFSTPNLYFHQTTLYNLLRKEGVPLS KLDFIGALSLSPSE >Mature_173_residues TMLSDITLTPFSNSLNVAIHLMTKAKAHFEAQNRNTNDIVDLQLVDDMLPLSFQVNSICKHTLGATKAVLSGNFYIPSPL GEIDFNGLIELLQNTQKELSAITENEVNSRSGETVIFHYPERPMPFTAENFITSFSTPNLYFHQTTLYNLLRKEGVPLSK LDFIGALSLSPSE
Specific function: Unknown
COG id: COG3812
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19409; Mature: 19278
Theoretical pI: Translated: 4.91; Mature: 4.91
Prosite motif: PS00079 MULTICOPPER_OXIDASE1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTMLSDITLTPFSNSLNVAIHLMTKAKAHFEAQNRNTNDIVDLQLVDDMLPLSFQVNSIC CCCCCCEEECCCCCCCEEEEEEEEHHHHHHHCCCCCCCCEEEEEECCCCCCCCEEHHHHH KHTLGATKAVLSGNFYIPSPLGEIDFNGLIELLQNTQKELSAITENEVNSRSGETVIFHY HHHHCHHHHHHCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEC PERPMPFTAENFITSFSTPNLYFHQTTLYNLLRKEGVPLSKLDFIGALSLSPSE CCCCCCCCHHHHHHHCCCCCEEEEHHHHHHHHHHCCCCCCHHHHEEEECCCCCC >Mature Secondary Structure TMLSDITLTPFSNSLNVAIHLMTKAKAHFEAQNRNTNDIVDLQLVDDMLPLSFQVNSIC CCCCCEEECCCCCCCEEEEEEEEHHHHHHHCCCCCCCCEEEEEECCCCCCCCEEHHHHH KHTLGATKAVLSGNFYIPSPLGEIDFNGLIELLQNTQKELSAITENEVNSRSGETVIFHY HHHHCHHHHHHCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEC PERPMPFTAENFITSFSTPNLYFHQTTLYNLLRKEGVPLSKLDFIGALSLSPSE CCCCCCCCHHHHHHHCCCCCEEEEHHHHHHHHHHCCCCCCHHHHEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA