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The map label for this gene is vasS

Identifier: 209694673

GI number: 209694673

Start: 1224260

End: 1224685

Strand: Reverse

Name: vasS

Synonym: VSAL_I1122

Alternate gene names: NA

Gene position: 1224685-1224260 (Counterclockwise)

Preceding gene: 209694674

Following gene: 209694672

Centisome position: 36.83

GC content: 34.98

Gene sequence:

>426_bases
ATGCTTAAACAACGATTATTTGAACGTTTATTGGCCGGGAATGTATCGATGAATACGTCGGTATCAGTAATGATATTAAC
GGAGTCCATTAAAAATCACGTCACTCAATTACTCTCAACAAGGCAAGGTGACGCAAAAATTCGTCCCGATTTAGGTTTAC
CAGATTTGAATATCTCACACATGACGCCTCATGATGCGATTCTGCACATTAAAAGAGAGGTAGAACGTGTCATCTCACAG
TACGAAACTCGAATCATCAATACCAAAGTTAATTATTTAGGTAATATAAACAGCCCTATTCATCTTTATTTTGAAATCAA
TGGTGATATTTTATTAAATAACCAACTAACGCCTATTTCTTTTAATACTTACGCTCAAAAAGTTAACACTAAGCCTTATA
ACTATGAAATTCAAGGCCTGGCATGA

Upstream 100 bases:

>100_bases
AGATCAAGAATAACAAAATCGTGCCTTGTGCTTATTAATGACAATAAACACAAGGCAATAGTGGCGTGGCATCATTCATT
TAAGGAAGAAAGGAAAAGTA

Downstream 100 bases:

>100_bases
GTTTTAATACCTATTATCAAACAGAATTAGCGGCATTGAGAGAGCTTGGAAAATCATTTTCAGAAGAAAATCCCGCCTTA
GCCCCTTTTCTTGGACAAGA

Product: type VI secretion protein VasS

Products: NA

Alternate protein names: Type VI Secretion Protein VasS

Number of amino acids: Translated: 141; Mature: 141

Protein sequence:

>141_residues
MLKQRLFERLLAGNVSMNTSVSVMILTESIKNHVTQLLSTRQGDAKIRPDLGLPDLNISHMTPHDAILHIKREVERVISQ
YETRIINTKVNYLGNINSPIHLYFEINGDILLNNQLTPISFNTYAQKVNTKPYNYEIQGLA

Sequences:

>Translated_141_residues
MLKQRLFERLLAGNVSMNTSVSVMILTESIKNHVTQLLSTRQGDAKIRPDLGLPDLNISHMTPHDAILHIKREVERVISQ
YETRIINTKVNYLGNINSPIHLYFEINGDILLNNQLTPISFNTYAQKVNTKPYNYEIQGLA
>Mature_141_residues
MLKQRLFERLLAGNVSMNTSVSVMILTESIKNHVTQLLSTRQGDAKIRPDLGLPDLNISHMTPHDAILHIKREVERVISQ
YETRIINTKVNYLGNINSPIHLYFEINGDILLNNQLTPISFNTYAQKVNTKPYNYEIQGLA

Specific function: Unknown

COG id: COG3518

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 16103; Mature: 16103

Theoretical pI: Translated: 9.35; Mature: 9.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKQRLFERLLAGNVSMNTSVSVMILTESIKNHVTQLLSTRQGDAKIRPDLGLPDLNISH
CCHHHHHHHHHHCCCCCCCCEEEEEEHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCC
MTPHDAILHIKREVERVISQYETRIINTKVNYLGNINSPIHLYFEINGDILLNNQLTPIS
CCCHHHHHHHHHHHHHHHHHHHHHHEEEEHEECCCCCCCEEEEEEECCCEEECCCCCCEE
FNTYAQKVNTKPYNYEIQGLA
EHHHHHHCCCCCCCEEEEEEC
>Mature Secondary Structure
MLKQRLFERLLAGNVSMNTSVSVMILTESIKNHVTQLLSTRQGDAKIRPDLGLPDLNISH
CCHHHHHHHHHHCCCCCCCCEEEEEEHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCC
MTPHDAILHIKREVERVISQYETRIINTKVNYLGNINSPIHLYFEINGDILLNNQLTPIS
CCCHHHHHHHHHHHHHHHHHHHHHHEEEEHEECCCCCCCEEEEEEECCCEEECCCCCCEE
FNTYAQKVNTKPYNYEIQGLA
EHHHHHHCCCCCCCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA