| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
Click here to switch to the map view.
The map label for this gene is 209694663
Identifier: 209694663
GI number: 209694663
Start: 1206727
End: 1207227
Strand: Reverse
Name: 209694663
Synonym: VSAL_I1109
Alternate gene names: NA
Gene position: 1207227-1206727 (Counterclockwise)
Preceding gene: 209694665
Following gene: 209694655
Centisome position: 36.31
GC content: 34.53
Gene sequence:
>501_bases ATGAAAAAGAAAGGCTTCACTTTGATAGAACTTATCATTGTAATTGTAGTTTTAAGTATCTTAGCAATTACTGCAGCATC AAAATTTATAAACCTTCAACGTGATTCTCGAATTTCAGCGCTACAAGGGCTAAAAGGAGAAATGACTGGAGCAATGAACC AACTACATCCAAAAACAATTCTTACAGGAGTTGACACTCAAGCAAGCGGGTCTATAACAATACTTGGTGATAATATTCAC ATTGTATATGGTTACCCAAAAGCCGATGCAGCCAAATCTTGGAATAAACTAATGAATCAAGTTTTTGTTGATTCTCAATA CAATGACAATATTCCATCTGAATGGTATTTTCATAATGACACTAGTAAACCCTATATTACTTTCATGCACAGAAGTAAAA AATACAGTACTGATAAGTGTAATATTAAATACAGTGAAGCGGTAAATAGACTGCACTCCTTTAGGTACATGGAGTGGTGC CACTGTTTACAATGGTGGTGA
Upstream 100 bases:
>100_bases CAAATAAAACCAACATTGTTCTAACTTCATCAAATCAATACTTTGCTGTTTATCTATATTGTTTAGACTATAGTCTTCTA AATAATCAGGATTGCATACG
Downstream 100 bases:
>100_bases CCAAGTAAAACAAGGAAATAATGCTTATAAAGCAAAGTATTGGACTCAGAATAATGATCCTGCAACGGCTGGTGAATGGG GAGCATGGCAAGACTTAGGC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 166; Mature: 166
Protein sequence:
>166_residues MKKKGFTLIELIIVIVVLSILAITAASKFINLQRDSRISALQGLKGEMTGAMNQLHPKTILTGVDTQASGSITILGDNIH IVYGYPKADAAKSWNKLMNQVFVDSQYNDNIPSEWYFHNDTSKPYITFMHRSKKYSTDKCNIKYSEAVNRLHSFRYMEWC HCLQWW
Sequences:
>Translated_166_residues MKKKGFTLIELIIVIVVLSILAITAASKFINLQRDSRISALQGLKGEMTGAMNQLHPKTILTGVDTQASGSITILGDNIH IVYGYPKADAAKSWNKLMNQVFVDSQYNDNIPSEWYFHNDTSKPYITFMHRSKKYSTDKCNIKYSEAVNRLHSFRYMEWC HCLQWW >Mature_166_residues MKKKGFTLIELIIVIVVLSILAITAASKFINLQRDSRISALQGLKGEMTGAMNQLHPKTILTGVDTQASGSITILGDNIH IVYGYPKADAAKSWNKLMNQVFVDSQYNDNIPSEWYFHNDTSKPYITFMHRSKKYSTDKCNIKYSEAVNRLHSFRYMEWC HCLQWW
Specific function: Unknown
COG id: COG2165
COG function: function code NU; Type II secretory pathway, pseudopilin PulG
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19097; Mature: 19097
Theoretical pI: Translated: 9.52; Mature: 9.52
Prosite motif: PS00409 PROKAR_NTER_METHYL
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 5.4 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 3.6 %Met (Mature Protein) 5.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKKGFTLIELIIVIVVLSILAITAASKFINLQRDSRISALQGLKGEMTGAMNQLHPKTI CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCHHHHHHHHHCCCHHH LTGVDTQASGSITILGDNIHIVYGYPKADAAKSWNKLMNQVFVDSQYNDNIPSEWYFHND EECCCCCCCCCEEEEECCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECC TSKPYITFMHRSKKYSTDKCNIKYSEAVNRLHSFRYMEWCHCLQWW CCCCEEEEEECCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MKKKGFTLIELIIVIVVLSILAITAASKFINLQRDSRISALQGLKGEMTGAMNQLHPKTI CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCHHHHHHHHHCCCHHH LTGVDTQASGSITILGDNIHIVYGYPKADAAKSWNKLMNQVFVDSQYNDNIPSEWYFHND EECCCCCCCCCEEEEECCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECC TSKPYITFMHRSKKYSTDKCNIKYSEAVNRLHSFRYMEWCHCLQWW CCCCEEEEEECCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA