| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is vasL [H]
Identifier: 209694665
GI number: 209694665
Start: 1209043
End: 1209696
Strand: Reverse
Name: vasL [H]
Synonym: VSAL_I1112
Alternate gene names: 209694665
Gene position: 1209696-1209043 (Counterclockwise)
Preceding gene: 209694666
Following gene: 209694663
Centisome position: 36.38
GC content: 39.76
Gene sequence:
>654_bases ATGGCTTATTTCTCTGCAGAAGGAAAAGTAAGGGACAAAAATGAAGATTCTATTTTGTCTCTTACTGAACAAGGGATTTG GGTCGTTGCTGATGGAATGGGTGGCTATGAACACGGTGAGATTGCCAGTGGCATGATCACTGATTCATTTAAAACAGAGC AACTTCATGGGACATTAGAACAGAAAATCACAAAAGCAAAACGAATGCTTTTAAAAGTAAATCATCACCTAAGTCAGGAA AAAACGCTCTCTCGTAGTCGCATCATTGGCAGTACCGTTTGCATGTTAATCGCTCATCATGGGCACATGGCTTGTCTTTG GGCTGGTGACTCAAGGTGCTACTTATTTCGACATAAAAGACTGTATCAAATATCAAAAGATCACACTCAAGAACAGAATG GAAAAGAGGCTCTAACTCAAGCCATTGGAATGGGGAATAACTTGCAAATTGAACACTGTATCATCCCCCTTCAACATCAA GATACGTTCTTACTCACAAGTGATGGGGTACATAAATACCTATCAAATGCCATGATAGAAGCTTGCATGGCATTACCTAG TACGCTTAAGGGATGCTATCACCTAAAAGAGCAAGTGTTACTGACTCCTGCAAATGACAATTTATCTGCAATAATGATTA AGGTGTATCGATGA
Upstream 100 bases:
>100_bases ACCTTATTTATAGTGACCGAACACCGAACCCATTTAATCGTAAAATTCTGACTAATTTCTATCTTCCAAAAAGGATTAAT GGATAAGTCAACAATTTCAA
Downstream 100 bases:
>100_bases ATATAGATCAGTTTATCAATGGGTATGATTCTATCGACAATACAATAGACTCAACGAAAGCTATGTGATATATAGGTTAA ATTAGTCACGGTTAACGACC
Product: serine/threonine phosphoprotein phosphatase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 217; Mature: 216
Protein sequence:
>217_residues MAYFSAEGKVRDKNEDSILSLTEQGIWVVADGMGGYEHGEIASGMITDSFKTEQLHGTLEQKITKAKRMLLKVNHHLSQE KTLSRSRIIGSTVCMLIAHHGHMACLWAGDSRCYLFRHKRLYQISKDHTQEQNGKEALTQAIGMGNNLQIEHCIIPLQHQ DTFLLTSDGVHKYLSNAMIEACMALPSTLKGCYHLKEQVLLTPANDNLSAIMIKVYR
Sequences:
>Translated_217_residues MAYFSAEGKVRDKNEDSILSLTEQGIWVVADGMGGYEHGEIASGMITDSFKTEQLHGTLEQKITKAKRMLLKVNHHLSQE KTLSRSRIIGSTVCMLIAHHGHMACLWAGDSRCYLFRHKRLYQISKDHTQEQNGKEALTQAIGMGNNLQIEHCIIPLQHQ DTFLLTSDGVHKYLSNAMIEACMALPSTLKGCYHLKEQVLLTPANDNLSAIMIKVYR >Mature_216_residues AYFSAEGKVRDKNEDSILSLTEQGIWVVADGMGGYEHGEIASGMITDSFKTEQLHGTLEQKITKAKRMLLKVNHHLSQEK TLSRSRIIGSTVCMLIAHHGHMACLWAGDSRCYLFRHKRLYQISKDHTQEQNGKEALTQAIGMGNNLQIEHCIIPLQHQD TFLLTSDGVHKYLSNAMIEACMALPSTLKGCYHLKEQVLLTPANDNLSAIMIKVYR
Specific function: Protein phosphatase that dephosphorylates EF-Tu [H]
COG id: COG0631
COG function: function code T; Serine/threonine protein phosphatase
Gene ontology:
Cell location: Cytoplasm. Membrane; Peripheral membrane protein [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 PP2C-like domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR015655 - InterPro: IPR001932 - InterPro: IPR014045 [H]
Pfam domain/function: PF00481 PP2C [H]
EC number: =3.1.3.16 [H]
Molecular weight: Translated: 24383; Mature: 24251
Theoretical pI: Translated: 7.92; Mature: 7.92
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.8 %Cys (Translated Protein) 4.6 %Met (Translated Protein) 7.4 %Cys+Met (Translated Protein) 2.8 %Cys (Mature Protein) 4.2 %Met (Mature Protein) 6.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAYFSAEGKVRDKNEDSILSLTEQGIWVVADGMGGYEHGEIASGMITDSFKTEQLHGTLE CCEECCCCCCCCCCCCCEEEEECCCEEEEECCCCCCCCCCCCCCEECCCCCHHHHHHHHH QKITKAKRMLLKVNHHLSQEKTLSRSRIIGSTVCMLIAHHGHMACLWAGDSRCYLFRHKR HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCEEEEEEHHH LYQISKDHTQEQNGKEALTQAIGMGNNLQIEHCIIPLQHQDTFLLTSDGVHKYLSNAMIE HHHHHHHHCCCCCHHHHHHHHHCCCCCEEEEEEEEEECCCCEEEEECCCHHHHHHHHHHH ACMALPSTLKGCYHLKEQVLLTPANDNLSAIMIKVYR HHHHHHHHHHHHHHHHHCEEEECCCCCCEEEEEEEEC >Mature Secondary Structure AYFSAEGKVRDKNEDSILSLTEQGIWVVADGMGGYEHGEIASGMITDSFKTEQLHGTLE CEECCCCCCCCCCCCCEEEEECCCEEEEECCCCCCCCCCCCCCEECCCCCHHHHHHHHH QKITKAKRMLLKVNHHLSQEKTLSRSRIIGSTVCMLIAHHGHMACLWAGDSRCYLFRHKR HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCEEEEEEHHH LYQISKDHTQEQNGKEALTQAIGMGNNLQIEHCIIPLQHQDTFLLTSDGVHKYLSNAMIE HHHHHHHHCCCCCHHHHHHHHHCCCCCEEEEEEEEEECCCCEEEEECCCHHHHHHHHHHH ACMALPSTLKGCYHLKEQVLLTPANDNLSAIMIKVYR HHHHHHHHHHHHHHHHHCEEEECCCCCCEEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 11679669 [H]