Definition Aliivibrio salmonicida LFI1238 chromosome 1, complete genome.
Accession NC_011312
Length 3,325,165

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The map label for this gene is 209694601

Identifier: 209694601

GI number: 209694601

Start: 1132788

End: 1134902

Strand: Direct

Name: 209694601

Synonym: VSAL_I1041

Alternate gene names: NA

Gene position: 1132788-1134902 (Clockwise)

Preceding gene: 209694600

Following gene: 209694602

Centisome position: 34.07

GC content: 45.06

Gene sequence:

>2115_bases
ATGAGTGCCCACCTAGACAAATTGATGATGCAAGTTGCATTGATTGATAGTGTCACCAAACCGCTAAAAGGGATCCAGAA
TACGGTGACCGAAACAGCGGATGTTGGCCGTTCAGGTTGGGAAAAAATGGCAGGTGGTACGGCTGGCGTGATTGCAGCAG
GTTTTGCTGTTCAACAGGCGTTAATGCCAGCCATTGAAATGGATAGGGTGCTTGGTGAAGTTAAATCGCTTGGTGTGGTT
GATGAAGATTTACAGCAACTTCAAAAAACCGCATTAGCCTTTTCGGTTGAGTATGGAAAGTCAGCACAAGAAGTGGTTGG
TGCGGCCTATGACATCAAATCGGCTTTCGGGGATATTACTGGACCAGAGTTATCTGATATTACCAAAAGCTCTGCCGTTC
TTGCTGCAGCAACTAAAGCGGATACAGCAACCATAACTGATTATATGGGCACCATGTATGGGGTGTTTAAGAATCAGGCC
AATGACATGGGTGTGGGCATTTGGTCAAAGAACGTAGCAGGCATGACGGCTCAATCTGTGGAGATGTTTAAAACAACGGG
TAAAGGCATGAGTGATGCGTTTACCAGTGTTGGAGCAAACGCAACCGCTGCAGGTATCAAGATGAATGAGCAGATGGCTA
TTCTTGGTACGTTGCAATCCACGATGTCAGGCAGTGAAGCCGGTACTAAATATAAATCGTTCTTGACTGGTGTTGGTGGC
GCACAAGACAAACTGAACATGAAGTTTGTTGATAGCCAGGGCGCAATGCTGCCAATGGTGGATATTCTCAATAAATTAAA
AGGTCAGTTTGGCGACACGCTTGATGTGGCAGAAAGTGACGCATTAAAGAAAGCATTTGGCTCAGATGAGGCCGTCAGCA
TGATCAAGTTATTGATGGCTGATACTAACGGATTAGCAAGTAGCATTAACTCTCTTGGTAATGTGAAAGGCATGAGCAAA
GCCGAGAATATGGCTGGTGCTATGACTGACCAATGGCAACGACTTGAAGCCGCATGGTTTGCGATCCGTGCCGGAGCGTT
TGGGTTAATTCTTCCATCTATTAATGCTATTGCTGGTTCAATGGCCGATGGTTTTAATGTGCTGCTTGGTTGGACTCAAG
AGCTTCCTGTATTAACGCAATACCTTGGTTATTTCGCCTTAACAATAGTGGCTGGTGCTGGGTTAATTGCGGCATGGAAT
ATGGTTGTCGGTTTGGCATCTTTGATGAGTGCCGGATGGTCTAGCGCCACGTTATTACTCACAACAGTCATGAAAGGCTT
TAATTTAGTGATGAGAATGGCACGTTTTGCAGCTCTTGGATTTGCGATGGCTGCAGCAGTGGCACAAGTTCCATTACTGC
CCTTAATTCTTGGTATTGGTGCCGTGGTTGCGGCAGTCGGTGCGGTGATTTATTTCTGGGATGATTTAAAAGCGGCGTGG
AGCGATTTTTCATTCATTGAATCTCTAGGCTCAATGGTGGATTGGTTAATTGAGAAAATTAACTTAATACCAGGCATAAA
TATTGGCGGTGAAAGTTCGGGCATTCCTCAAATGGATACGCTTGAATTAAGCACAGCAACACCAACGCATTACGCCTCAA
AAGCAGCAGTGCCGGATTACAGTTATGGGTATCAAGCGCCAGTGACTCAAGAGGTCGCAGTTACTCCAAATGTTACAGAG
CCTGTGATCCCGAAAGTGTCTGAACAAAGTGTTAACTATGGCTCTCAATATTCAGGGTTGAATACCGTACCAAGCTATCA
AGGTAATGTGTATTACCAGAATCAAATACCAGTACAACCAGAGTCATCTGATCTGATTATAGGCTCGGTGGTTGCTCAGC
CAGAGGTTCCAGAAGTGAATGGTATTGTTACTTATGACGGAGCTATTCCACCATTAACTGATACGGATAAGAGTAAAGAG
ATGTCGGCACCAATTTCAGCTTACATCGGTGGAAATGCAGAAGGTAAAGCTAATGTGTCTCAGCAATTAAAACAGATGTC
TGCAGGCAGTACCGATAATAGCCGAACGCAGCATGTTGGCGATGTGTATATCACTCAAGAGCAAGCCTTTACGCCAGAAG
ATTTATCAGCATGGAATGAGATGAGTACCCCATGA

Upstream 100 bases:

>100_bases
AGAATTTAGCCAGAGCACTTTGGCTTGATAAACATAACGCTGAAATCGTCGCAAACGGGATAGCCCTCGCATTTAGCAAC
GAATAAGGAATTGCCATTAG

Downstream 100 bases:

>100_bases
GCCAACAATATATTGATTATTTAGTAACGGATGGCGGTTTAGATTTTGATGCAGGCCAACAGCCTATTGAAACCAGTGAT
CGCAATAGTATTGCCCAAGA

Product: tail length determinator

Products: NA

Alternate protein names: Phage Tail Tape Measure Protein Core Region; Tail Tape Measure Protein; Tail Length Determinator; Phage Tail Length Determinator; Tail Tape Measure Protein Bacteriophage Origin; Phage-Related Tail Protein; Phage Tail Tape Measure Core Region; Prophage; Phage-Like Protein; Phage Gene; Phage Tail Tape Measure Family Protein; Phage Tail Tape Measure Protein Family; Phage Tail Protein; Phage Tail Tape Measure Protein Core Region

Number of amino acids: Translated: 704; Mature: 703

Protein sequence:

>704_residues
MSAHLDKLMMQVALIDSVTKPLKGIQNTVTETADVGRSGWEKMAGGTAGVIAAGFAVQQALMPAIEMDRVLGEVKSLGVV
DEDLQQLQKTALAFSVEYGKSAQEVVGAAYDIKSAFGDITGPELSDITKSSAVLAAATKADTATITDYMGTMYGVFKNQA
NDMGVGIWSKNVAGMTAQSVEMFKTTGKGMSDAFTSVGANATAAGIKMNEQMAILGTLQSTMSGSEAGTKYKSFLTGVGG
AQDKLNMKFVDSQGAMLPMVDILNKLKGQFGDTLDVAESDALKKAFGSDEAVSMIKLLMADTNGLASSINSLGNVKGMSK
AENMAGAMTDQWQRLEAAWFAIRAGAFGLILPSINAIAGSMADGFNVLLGWTQELPVLTQYLGYFALTIVAGAGLIAAWN
MVVGLASLMSAGWSSATLLLTTVMKGFNLVMRMARFAALGFAMAAAVAQVPLLPLILGIGAVVAAVGAVIYFWDDLKAAW
SDFSFIESLGSMVDWLIEKINLIPGINIGGESSGIPQMDTLELSTATPTHYASKAAVPDYSYGYQAPVTQEVAVTPNVTE
PVIPKVSEQSVNYGSQYSGLNTVPSYQGNVYYQNQIPVQPESSDLIIGSVVAQPEVPEVNGIVTYDGAIPPLTDTDKSKE
MSAPISAYIGGNAEGKANVSQQLKQMSAGSTDNSRTQHVGDVYITQEQAFTPEDLSAWNEMSTP

Sequences:

>Translated_704_residues
MSAHLDKLMMQVALIDSVTKPLKGIQNTVTETADVGRSGWEKMAGGTAGVIAAGFAVQQALMPAIEMDRVLGEVKSLGVV
DEDLQQLQKTALAFSVEYGKSAQEVVGAAYDIKSAFGDITGPELSDITKSSAVLAAATKADTATITDYMGTMYGVFKNQA
NDMGVGIWSKNVAGMTAQSVEMFKTTGKGMSDAFTSVGANATAAGIKMNEQMAILGTLQSTMSGSEAGTKYKSFLTGVGG
AQDKLNMKFVDSQGAMLPMVDILNKLKGQFGDTLDVAESDALKKAFGSDEAVSMIKLLMADTNGLASSINSLGNVKGMSK
AENMAGAMTDQWQRLEAAWFAIRAGAFGLILPSINAIAGSMADGFNVLLGWTQELPVLTQYLGYFALTIVAGAGLIAAWN
MVVGLASLMSAGWSSATLLLTTVMKGFNLVMRMARFAALGFAMAAAVAQVPLLPLILGIGAVVAAVGAVIYFWDDLKAAW
SDFSFIESLGSMVDWLIEKINLIPGINIGGESSGIPQMDTLELSTATPTHYASKAAVPDYSYGYQAPVTQEVAVTPNVTE
PVIPKVSEQSVNYGSQYSGLNTVPSYQGNVYYQNQIPVQPESSDLIIGSVVAQPEVPEVNGIVTYDGAIPPLTDTDKSKE
MSAPISAYIGGNAEGKANVSQQLKQMSAGSTDNSRTQHVGDVYITQEQAFTPEDLSAWNEMSTP
>Mature_703_residues
SAHLDKLMMQVALIDSVTKPLKGIQNTVTETADVGRSGWEKMAGGTAGVIAAGFAVQQALMPAIEMDRVLGEVKSLGVVD
EDLQQLQKTALAFSVEYGKSAQEVVGAAYDIKSAFGDITGPELSDITKSSAVLAAATKADTATITDYMGTMYGVFKNQAN
DMGVGIWSKNVAGMTAQSVEMFKTTGKGMSDAFTSVGANATAAGIKMNEQMAILGTLQSTMSGSEAGTKYKSFLTGVGGA
QDKLNMKFVDSQGAMLPMVDILNKLKGQFGDTLDVAESDALKKAFGSDEAVSMIKLLMADTNGLASSINSLGNVKGMSKA
ENMAGAMTDQWQRLEAAWFAIRAGAFGLILPSINAIAGSMADGFNVLLGWTQELPVLTQYLGYFALTIVAGAGLIAAWNM
VVGLASLMSAGWSSATLLLTTVMKGFNLVMRMARFAALGFAMAAAVAQVPLLPLILGIGAVVAAVGAVIYFWDDLKAAWS
DFSFIESLGSMVDWLIEKINLIPGINIGGESSGIPQMDTLELSTATPTHYASKAAVPDYSYGYQAPVTQEVAVTPNVTEP
VIPKVSEQSVNYGSQYSGLNTVPSYQGNVYYQNQIPVQPESSDLIIGSVVAQPEVPEVNGIVTYDGAIPPLTDTDKSKEM
SAPISAYIGGNAEGKANVSQQLKQMSAGSTDNSRTQHVGDVYITQEQAFTPEDLSAWNEMSTP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 74032; Mature: 73901

Theoretical pI: Translated: 4.31; Mature: 4.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.0 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.8 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAHLDKLMMQVALIDSVTKPLKGIQNTVTETADVGRSGWEKMAGGTAGVIAAGFAVQQA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCHHHHHHHHHHHHH
LMPAIEMDRVLGEVKSLGVVDEDLQQLQKTALAFSVEYGKSAQEVVGAAYDIKSAFGDIT
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCC
GPELSDITKSSAVLAAATKADTATITDYMGTMYGVFKNQANDMGVGIWSKNVAGMTAQSV
CCCHHHHHHHHHHEEEECCCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHH
EMFKTTGKGMSDAFTSVGANATAAGIKMNEQMAILGTLQSTMSGSEAGTKYKSFLTGVGG
HHHHHCCCCHHHHHHHCCCCCEECCEEECCCHHHHHHHHHHHCCCCCCHHHHHHHHCCCC
AQDKLNMKFVDSQGAMLPMVDILNKLKGQFGDTLDVAESDALKKAFGSDEAVSMIKLLMA
CCCCCCEEEECCCCCEEHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHH
DTNGLASSINSLGNVKGMSKAENMAGAMTDQWQRLEAAWFAIRAGAFGLILPSINAIAGS
CCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
MADGFNVLLGWTQELPVLTQYLGYFALTIVAGAGLIAAWNMVVGLASLMSAGWSSATLLL
HCCCCCEECCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHH
TTVMKGFNLVMRMARFAALGFAMAAAVAQVPLLPLILGIGAVVAAVGAVIYFWDDLKAAW
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SDFSFIESLGSMVDWLIEKINLIPGINIGGESSGIPQMDTLELSTATPTHYASKAAVPDY
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCCCHHHCCCCCCCC
SYGYQAPVTQEVAVTPNVTEPVIPKVSEQSVNYGSQYSGLNTVPSYQGNVYYQNQIPVQP
CCCCCCCCCCCEEECCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCEEECCCCCCCC
ESSDLIIGSVVAQPEVPEVNGIVTYDGAIPPLTDTDKSKEMSAPISAYIGGNAEGKANVS
CCCCEEEEEEECCCCCCCCCCEEEECCCCCCCCCCCCCHHHCCCCCEEECCCCCCCCHHH
QQLKQMSAGSTDNSRTQHVGDVYITQEQAFTPEDLSAWNEMSTP
HHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHCCCCC
>Mature Secondary Structure 
SAHLDKLMMQVALIDSVTKPLKGIQNTVTETADVGRSGWEKMAGGTAGVIAAGFAVQQA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCHHHHHHHHHHHHH
LMPAIEMDRVLGEVKSLGVVDEDLQQLQKTALAFSVEYGKSAQEVVGAAYDIKSAFGDIT
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCC
GPELSDITKSSAVLAAATKADTATITDYMGTMYGVFKNQANDMGVGIWSKNVAGMTAQSV
CCCHHHHHHHHHHEEEECCCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHH
EMFKTTGKGMSDAFTSVGANATAAGIKMNEQMAILGTLQSTMSGSEAGTKYKSFLTGVGG
HHHHHCCCCHHHHHHHCCCCCEECCEEECCCHHHHHHHHHHHCCCCCCHHHHHHHHCCCC
AQDKLNMKFVDSQGAMLPMVDILNKLKGQFGDTLDVAESDALKKAFGSDEAVSMIKLLMA
CCCCCCEEEECCCCCEEHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHH
DTNGLASSINSLGNVKGMSKAENMAGAMTDQWQRLEAAWFAIRAGAFGLILPSINAIAGS
CCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
MADGFNVLLGWTQELPVLTQYLGYFALTIVAGAGLIAAWNMVVGLASLMSAGWSSATLLL
HCCCCCEECCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHH
TTVMKGFNLVMRMARFAALGFAMAAAVAQVPLLPLILGIGAVVAAVGAVIYFWDDLKAAW
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SDFSFIESLGSMVDWLIEKINLIPGINIGGESSGIPQMDTLELSTATPTHYASKAAVPDY
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCCCHHHCCCCCCCC
SYGYQAPVTQEVAVTPNVTEPVIPKVSEQSVNYGSQYSGLNTVPSYQGNVYYQNQIPVQP
CCCCCCCCCCCEEECCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCEEECCCCCCCC
ESSDLIIGSVVAQPEVPEVNGIVTYDGAIPPLTDTDKSKEMSAPISAYIGGNAEGKANVS
CCCCEEEEEEECCCCCCCCCCEEEECCCCCCCCCCCCCHHHCCCCCEEECCCCCCCCHHH
QQLKQMSAGSTDNSRTQHVGDVYITQEQAFTPEDLSAWNEMSTP
HHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA