Definition Aliivibrio salmonicida LFI1238 chromosome 1, complete genome.
Accession NC_011312
Length 3,325,165

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The map label for this gene is 209694602

Identifier: 209694602

GI number: 209694602

Start: 1134899

End: 1135225

Strand: Direct

Name: 209694602

Synonym: VSAL_I1042

Alternate gene names: NA

Gene position: 1134899-1135225 (Clockwise)

Preceding gene: 209694601

Following gene: 209694603

Centisome position: 34.13

GC content: 41.28

Gene sequence:

>327_bases
ATGAGCCAACAATATATTGATTATTTAGTAACGGATGGCGGTTTAGATTTTGATGCAGGCCAACAGCCTATTGAAACCAG
TGATCGCAATAGTATTGCCCAAGACGTAAAGCACGCCATTTTAGAAAGTGGTTTGTTACGTGAGTATCAAGCAGAGCGAA
ACAGAACGTTGAGAGCCGATGTATTAACTCGAATTGAAATGCTGATTGAAACGGATAAACGCATTGAGCCAGGAACGGCA
GAGATTGAAGAGCAAACGGCAGAGCAATTATGGATGTTTGCTGAAACGGTAGATAACGACAATATCGAAATGGGAATGCC
ATTATGA

Upstream 100 bases:

>100_bases
CCGATAATAGCCGAACGCAGCATGTTGGCGATGTGTATATCACTCAAGAGCAAGCCTTTACGCCAGAAGATTTATCAGCA
TGGAATGAGATGAGTACCCC

Downstream 100 bases:

>100_bases
GTACAAGACCACTGGTTGATTTTAAGCAAATCATTGCTGATGAAGGGATCCCAACAACAGAAGAAGCCATTGCGATTGAA
CTTGAAAAAGAAGTGGTCGC

Product: phage protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 108; Mature: 107

Protein sequence:

>108_residues
MSQQYIDYLVTDGGLDFDAGQQPIETSDRNSIAQDVKHAILESGLLREYQAERNRTLRADVLTRIEMLIETDKRIEPGTA
EIEEQTAEQLWMFAETVDNDNIEMGMPL

Sequences:

>Translated_108_residues
MSQQYIDYLVTDGGLDFDAGQQPIETSDRNSIAQDVKHAILESGLLREYQAERNRTLRADVLTRIEMLIETDKRIEPGTA
EIEEQTAEQLWMFAETVDNDNIEMGMPL
>Mature_107_residues
SQQYIDYLVTDGGLDFDAGQQPIETSDRNSIAQDVKHAILESGLLREYQAERNRTLRADVLTRIEMLIETDKRIEPGTAE
IEEQTAEQLWMFAETVDNDNIEMGMPL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 12348; Mature: 12217

Theoretical pI: Translated: 3.92; Mature: 3.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQQYIDYLVTDGGLDFDAGQQPIETSDRNSIAQDVKHAILESGLLREYQAERNRTLRAD
CCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
VLTRIEMLIETDKRIEPGTAEIEEQTAEQLWMFAETVDNDNIEMGMPL
HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEECCCC
>Mature Secondary Structure 
SQQYIDYLVTDGGLDFDAGQQPIETSDRNSIAQDVKHAILESGLLREYQAERNRTLRAD
CCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
VLTRIEMLIETDKRIEPGTAEIEEQTAEQLWMFAETVDNDNIEMGMPL
HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA