| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is 209694532
Identifier: 209694532
GI number: 209694532
Start: 1066206
End: 1066727
Strand: Reverse
Name: 209694532
Synonym: VSAL_I0967
Alternate gene names: NA
Gene position: 1066727-1066206 (Counterclockwise)
Preceding gene: 209694533
Following gene: 209694531
Centisome position: 32.08
GC content: 33.52
Gene sequence:
>522_bases ATGTCGGCAAAAGAAATTAATCAAATAAAGGTATTTAATACCATCGCATTTTTGAAGTGTATTATTACTACACCGCATAA GTTTAAAAACGATGAAGTCCTGAAGAAAGCATTAAAATCTCAAACTGGTATTGCGAAATATGAAAATAAAGATCAAGAAA TCACCATCTGCTCCTTAAATACACTAAAAACAACTTCTGACACACTCTTAGGTAGAGGTTTCCTTGAACTAAATGAATTG CGCTTAAACGCAAAAGATGCTCTTGAAAATACTATAGAGGGTAAAAAATCGAATAAAAGAACAAAAACCGGACTGAACAA CAGAGTGACAGAGTTAGAAGCTAAACTTGATATCGCTTACCGTAGCAACTTCTTACTTACAACAATGATAAGTGAACTTC GATCTCAACTAAAACAAATCGCTATTTATGAAGGTTCTGTAGAAGAACGAAAGGAACTCTATCGAAAATTCAACGAAGGG GCCGAAACAAAATTAAGTTACACCCTTAATGGGAAGTTTTAA
Upstream 100 bases:
>100_bases AGTGATCTCTCTTGAACCTAATTTTTTTATTGTAACAACCCCCAATGGAAGCACTGAAAGTACTTTTAATTTAACATTAA CATTCAATGAGATAAATTAG
Downstream 100 bases:
>100_bases TATGCCTTATCGTAAATTAAGAAATTTTAAAAGTTGGAGTCATATTGACCCACTAAGCAAAAAATTAAAATTTAATTATT CTAAAGACATACAATTCTTT
Product: phage protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 173; Mature: 172
Protein sequence:
>173_residues MSAKEINQIKVFNTIAFLKCIITTPHKFKNDEVLKKALKSQTGIAKYENKDQEITICSLNTLKTTSDTLLGRGFLELNEL RLNAKDALENTIEGKKSNKRTKTGLNNRVTELEAKLDIAYRSNFLLTTMISELRSQLKQIAIYEGSVEERKELYRKFNEG AETKLSYTLNGKF
Sequences:
>Translated_173_residues MSAKEINQIKVFNTIAFLKCIITTPHKFKNDEVLKKALKSQTGIAKYENKDQEITICSLNTLKTTSDTLLGRGFLELNEL RLNAKDALENTIEGKKSNKRTKTGLNNRVTELEAKLDIAYRSNFLLTTMISELRSQLKQIAIYEGSVEERKELYRKFNEG AETKLSYTLNGKF >Mature_172_residues SAKEINQIKVFNTIAFLKCIITTPHKFKNDEVLKKALKSQTGIAKYENKDQEITICSLNTLKTTSDTLLGRGFLELNELR LNAKDALENTIEGKKSNKRTKTGLNNRVTELEAKLDIAYRSNFLLTTMISELRSQLKQIAIYEGSVEERKELYRKFNEGA ETKLSYTLNGKF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19759; Mature: 19628
Theoretical pI: Translated: 9.98; Mature: 9.98
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSAKEINQIKVFNTIAFLKCIITTPHKFKNDEVLKKALKSQTGIAKYENKDQEITICSLN CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHCCCCCCEEEEEECC TLKTTSDTLLGRGFLELNELRLNAKDALENTIEGKKSNKRTKTGLNNRVTELEAKLDIAY CCCCCHHHHHHCCHHHHHHHCCCHHHHHHHHHCCCCCCCHHHCCCCHHHHHHHHHHHHHH RSNFLLTTMISELRSQLKQIAIYEGSVEERKELYRKFNEGAETKLSYTLNGKF HCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCEEEEEECCCC >Mature Secondary Structure SAKEINQIKVFNTIAFLKCIITTPHKFKNDEVLKKALKSQTGIAKYENKDQEITICSLN CCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHCCCCCCEEEEEECC TLKTTSDTLLGRGFLELNELRLNAKDALENTIEGKKSNKRTKTGLNNRVTELEAKLDIAY CCCCCHHHHHHCCHHHHHHHCCCHHHHHHHHHCCCCCCCHHHCCCCHHHHHHHHHHHHHH RSNFLLTTMISELRSQLKQIAIYEGSVEERKELYRKFNEGAETKLSYTLNGKF HCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCEEEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA