| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is kpsD [H]
Identifier: 209693885
GI number: 209693885
Start: 324575
End: 327184
Strand: Direct
Name: kpsD [H]
Synonym: VSAL_I0277
Alternate gene names: 209693885
Gene position: 324575-327184 (Clockwise)
Preceding gene: 209693884
Following gene: 209693886
Centisome position: 9.76
GC content: 41.72
Gene sequence:
>2610_bases ATGATGATGAAAAGAACCCTTACCGCCAGCTTATTTGCGATGATAAGCACCAGCACGATGGCATTTACACCAAGCGCTGA ACAAATGGCCCAATTTCAGAAACTACCTAAATCCCAGCAAGAGCAATTAGCTCGTCAATATGGGGTAGATGTTAGTGTAC TTACAGGCAGTGCTTCTCCTGTACATAGGGCGAAAGGAAAAACAGAACAACAACCAGTGAGAGCCAGTGCTCCAATAGTA CCTTCTGTTGCTGATAAAAGTGAACGATTCTCAGCGTTTGGCTACGATATGTTTTTAGGGAAAGTGAAGACACTAACGTC TGTCGATAACCTACCGGTACCTAATGATTATGTCATGGCTCCCGGTGACGAAGTCGCTATTCAAATCTATGGTAAAAGCA GTGAAGAGCTAAACCTGGTTATTGATAGACAAGGGCGTTTAAATTTCCCTGAATTTGGTCCAGTTGCAGTCTCTGGTCAA ACCTTTGCTGATATGCAAAAACACCTAACTGGTATTATTAAACAGAAAATGTTAGGTGTAGATGTATTGGTATCAATGGG GGCAATGCGCACCATGCAAGTGTATGTGGTAGGTGAAGCCACACAGCCAGGGGCTTATAACGTCAATGGCCTAACGACCG TGACCCAAGCATTGATTGCCAGTGGTGGAATTAAAGAATCAGGCAGTCTACGTTATGTTGAACTTAAGCGTAAAGGCAGA GTGGTTGAGCGATTTGATGTGTATGACTTATTGCTAAAAGGCGATTCACGCAGTGATGTTCGTTTGTTAAGCGGTGATAC CCTGTATATCCCAACTAAAAACTCAAGTGTTGAGCTACATGGTGCAGTAAAACGTCCTGCGATTTATGAATTAAAAGGCA AAACCACCCTTTCTCGTTTACTTTCTTTTGGTGGTGGTTTACAGCCAAATGCTTTCCTATCTAAAATAAATATTACTCGT ATGGGATCGAATGGTTACGAGCAATTTACCGTAGACATGAGTACATCAAAAGGCAAAAACTTCATCATTAAAAATGGTGA TAAAGTGGTGATATCAAAAGCGGCAGAATCATTAAATAATGCAGTTGCACTGCGTGGAGAAGTCGCAAGACAAGGCGCGT ATAACTTTAAACAAGGCATGAAGGTTAGCGATATTGTCTCTTCAGTTCGTACCGATTTAAAACAAAATGCCGATTTAAAT TACGCGTTAATTGTACGTGAAATCAATAAGCAACGTGATATAGAAGTACTGCAATTTAACCTAGGCGAAGCCATTGCGAA CCCTAGCTCAAAAGAAAACCTGAGCTTAAAAGAAAGCGATCAAATTTTTGTGTTCAATAGTGGATTAGACCTTGATTATT GGTTTAAGTCTTATGCTGATGCTGAAGTGAAAGTGAAACACAGTGAACAGAAAAAAAATGTAGAAAGAGTAGATGTTGAG ACAGGGGCAATTATTGAAACTCAGTCTGTAACAACGTTGAAAACAGAAGATATCGATACCGTATCAAGAGGTGAACAACA AATACAAAAAAGCCGAGAGAAATTACTAACCCCAATTATCGATCGCCTGAAATCACAAGCGACGCTAGATAACCCTGCAC GGTTAATTGAAGTTAGCGGTGCCGTTAAGTACCCAGGTGTTTATCCGTTATCAAGAATCGGCACCATTAAACAAATAATT TTAGCCGCAGGTGGGTTAACCGAAGAAGCATACCTAGACAGTGCTGAATGGACGGTTCGTGATGTGAATGGCAGTGAGTT AATTATCGAGCAGAAGAAGATCTCGTTAAGAGATGCACTATCAGTAGAAGGTGAGAAAAACTTTACTTTAACAGGTCAAG ATCGCTTAATTGTAAAAACCAAACCAAATTGGCAAGAAGGCTACACCATTGAGTTACAAGGTGAAGTGATGTTCCCAGGG GCGTACTCATTTACCCGTGGTGAGACTTTACAAGAAGTGATTGAGCGCGCCGGTGGTTTAACAGAATATGCGTATGCTGA TGGCTCAGTCTTTAGTCGCGAACGATTAAAACGCCTAGAAGAAGAGCGTTTAAAAATCTTAAACATGCAACTAAAGCAAG AGATTGGTAACTTAGCACTGCGTCGTCAAAACTCAAGCGCACAATATACGACCCCACCAGGTGATGCGATGTTAATTGCT GATGAATTGGCGAAAACAGAAGCCATGGGTCGCATGGTTATTTCTATCCCAAGAGCAATCGAAGGGGATGAAATTGCCAA CTTAATGCTAGAAAAAGGCGATAAGCTGTATATTCCTGCAAGAAACCCAGTGATCAGCATCATGGGTGAAGTTCAGTTTG CCTCAAATCAATTGTTTGAACCTAATATGACAGTGGAAGAATACATTGAAGTCGCTGGCGGTACTAAAAAACAAGCCGAT ACTGACCGTATTTACGTAGTACGTGCAGATGGCTCAGTGATGGTCCCAAATAACTCATACTGGTTCAGCCGCAGCGATAA ACCACTAGCCCCAGGTGATACCATTATCGTACCACTAGACACCGATTACCTAGATGGCCTAAGTACGTTAACCTCAGCAA CGCAGATCTTGTATCAAATCGGTGTAGCGTGGAGCGCGATTAAGGACTAG
Upstream 100 bases:
>100_bases ATGCATCGTTAGGTTACGAATTTAGATTTTAGCGATTTATCTTAGTTTGACCGACCCTTTTATTTTTTAACTGATTTTTC ACAAGTGAATAAATAACAAA
Downstream 100 bases:
>100_bases AAACTATACGCTTCGCTAGCTAGAAACTATAAGATCAAGAGCCGACCTCGGACTTATTTTTTTGCTCTTATAGTAGTGAA ACGATCTAGTTTCTAGTAGC
Product: polysaccharide export periplasmic protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 869; Mature: 869
Protein sequence:
>869_residues MMMKRTLTASLFAMISTSTMAFTPSAEQMAQFQKLPKSQQEQLARQYGVDVSVLTGSASPVHRAKGKTEQQPVRASAPIV PSVADKSERFSAFGYDMFLGKVKTLTSVDNLPVPNDYVMAPGDEVAIQIYGKSSEELNLVIDRQGRLNFPEFGPVAVSGQ TFADMQKHLTGIIKQKMLGVDVLVSMGAMRTMQVYVVGEATQPGAYNVNGLTTVTQALIASGGIKESGSLRYVELKRKGR VVERFDVYDLLLKGDSRSDVRLLSGDTLYIPTKNSSVELHGAVKRPAIYELKGKTTLSRLLSFGGGLQPNAFLSKINITR MGSNGYEQFTVDMSTSKGKNFIIKNGDKVVISKAAESLNNAVALRGEVARQGAYNFKQGMKVSDIVSSVRTDLKQNADLN YALIVREINKQRDIEVLQFNLGEAIANPSSKENLSLKESDQIFVFNSGLDLDYWFKSYADAEVKVKHSEQKKNVERVDVE TGAIIETQSVTTLKTEDIDTVSRGEQQIQKSREKLLTPIIDRLKSQATLDNPARLIEVSGAVKYPGVYPLSRIGTIKQII LAAGGLTEEAYLDSAEWTVRDVNGSELIIEQKKISLRDALSVEGEKNFTLTGQDRLIVKTKPNWQEGYTIELQGEVMFPG AYSFTRGETLQEVIERAGGLTEYAYADGSVFSRERLKRLEEERLKILNMQLKQEIGNLALRRQNSSAQYTTPPGDAMLIA DELAKTEAMGRMVISIPRAIEGDEIANLMLEKGDKLYIPARNPVISIMGEVQFASNQLFEPNMTVEEYIEVAGGTKKQAD TDRIYVVRADGSVMVPNNSYWFSRSDKPLAPGDTIIVPLDTDYLDGLSTLTSATQILYQIGVAWSAIKD
Sequences:
>Translated_869_residues MMMKRTLTASLFAMISTSTMAFTPSAEQMAQFQKLPKSQQEQLARQYGVDVSVLTGSASPVHRAKGKTEQQPVRASAPIV PSVADKSERFSAFGYDMFLGKVKTLTSVDNLPVPNDYVMAPGDEVAIQIYGKSSEELNLVIDRQGRLNFPEFGPVAVSGQ TFADMQKHLTGIIKQKMLGVDVLVSMGAMRTMQVYVVGEATQPGAYNVNGLTTVTQALIASGGIKESGSLRYVELKRKGR VVERFDVYDLLLKGDSRSDVRLLSGDTLYIPTKNSSVELHGAVKRPAIYELKGKTTLSRLLSFGGGLQPNAFLSKINITR MGSNGYEQFTVDMSTSKGKNFIIKNGDKVVISKAAESLNNAVALRGEVARQGAYNFKQGMKVSDIVSSVRTDLKQNADLN YALIVREINKQRDIEVLQFNLGEAIANPSSKENLSLKESDQIFVFNSGLDLDYWFKSYADAEVKVKHSEQKKNVERVDVE TGAIIETQSVTTLKTEDIDTVSRGEQQIQKSREKLLTPIIDRLKSQATLDNPARLIEVSGAVKYPGVYPLSRIGTIKQII LAAGGLTEEAYLDSAEWTVRDVNGSELIIEQKKISLRDALSVEGEKNFTLTGQDRLIVKTKPNWQEGYTIELQGEVMFPG AYSFTRGETLQEVIERAGGLTEYAYADGSVFSRERLKRLEEERLKILNMQLKQEIGNLALRRQNSSAQYTTPPGDAMLIA DELAKTEAMGRMVISIPRAIEGDEIANLMLEKGDKLYIPARNPVISIMGEVQFASNQLFEPNMTVEEYIEVAGGTKKQAD TDRIYVVRADGSVMVPNNSYWFSRSDKPLAPGDTIIVPLDTDYLDGLSTLTSATQILYQIGVAWSAIKD >Mature_869_residues MMMKRTLTASLFAMISTSTMAFTPSAEQMAQFQKLPKSQQEQLARQYGVDVSVLTGSASPVHRAKGKTEQQPVRASAPIV PSVADKSERFSAFGYDMFLGKVKTLTSVDNLPVPNDYVMAPGDEVAIQIYGKSSEELNLVIDRQGRLNFPEFGPVAVSGQ TFADMQKHLTGIIKQKMLGVDVLVSMGAMRTMQVYVVGEATQPGAYNVNGLTTVTQALIASGGIKESGSLRYVELKRKGR VVERFDVYDLLLKGDSRSDVRLLSGDTLYIPTKNSSVELHGAVKRPAIYELKGKTTLSRLLSFGGGLQPNAFLSKINITR MGSNGYEQFTVDMSTSKGKNFIIKNGDKVVISKAAESLNNAVALRGEVARQGAYNFKQGMKVSDIVSSVRTDLKQNADLN YALIVREINKQRDIEVLQFNLGEAIANPSSKENLSLKESDQIFVFNSGLDLDYWFKSYADAEVKVKHSEQKKNVERVDVE TGAIIETQSVTTLKTEDIDTVSRGEQQIQKSREKLLTPIIDRLKSQATLDNPARLIEVSGAVKYPGVYPLSRIGTIKQII LAAGGLTEEAYLDSAEWTVRDVNGSELIIEQKKISLRDALSVEGEKNFTLTGQDRLIVKTKPNWQEGYTIELQGEVMFPG AYSFTRGETLQEVIERAGGLTEYAYADGSVFSRERLKRLEEERLKILNMQLKQEIGNLALRRQNSSAQYTTPPGDAMLIA DELAKTEAMGRMVISIPRAIEGDEIANLMLEKGDKLYIPARNPVISIMGEVQFASNQLFEPNMTVEEYIEVAGGTKKQAD TDRIYVVRADGSVMVPNNSYWFSRSDKPLAPGDTIIVPLDTDYLDGLSTLTSATQILYQIGVAWSAIKD
Specific function: Involved in the translocation of the polysialic acid capsule across the outer membrane to the cell surface. May function as the periplasmic binding element of the PSA transport system, in which it transiently interacts with the membrane component of the t
COG id: COG1596
COG function: function code M; Periplasmic protein involved in polysaccharide export
Gene ontology:
Cell location: Periplasm [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: To E.coli K5 kpsD [H]
Homologues:
Organism=Escherichia coli, GI1788376, Length=182, Percent_Identity=26.3736263736264, Blast_Score=69, Evalue=2e-12, Organism=Escherichia coli, GI1787218, Length=143, Percent_Identity=29.3706293706294, Blast_Score=64, Evalue=3e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003715 [H]
Pfam domain/function: PF02563 Poly_export [H]
EC number: NA
Molecular weight: Translated: 95862; Mature: 95862
Theoretical pI: Translated: 6.04; Mature: 6.04
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMMKRTLTASLFAMISTSTMAFTPSAEQMAQFQKLPKSQQEQLARQYGVDVSVLTGSASP CCCHHHHHHHHHHHHHCCEEEECCCHHHHHHHHHCCCHHHHHHHHHHCCEEEEEECCCCC VHRAKGKTEQQPVRASAPIVPSVADKSERFSAFGYDMFLGKVKTLTSVDNLPVPNDYVMA HHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEC PGDEVAIQIYGKSSEELNLVIDRQGRLNFPEFGPVAVSGQTFADMQKHLTGIIKQKMLGV CCCEEEEEEECCCCCCEEEEEECCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHH DVLVSMGAMRTMQVYVVGEATQPGAYNVNGLTTVTQALIASGGIKESGSLRYVELKRKGR HHHHHHCCCEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEECCCCC VVERFDVYDLLLKGDSRSDVRLLSGDTLYIPTKNSSVELHGAVKRPAIYELKGKTTLSRL EEHHHHHEEEEEECCCCCCEEEEECCEEEEECCCCCEEEEECCCCCEEEEECCCHHHHHH LSFGGGLQPNAFLSKINITRMGSNGYEQFTVDMSTSKGKNFIIKNGDKVVISKAAESLNN HHHCCCCCCCHHHEEEEEEEECCCCCEEEEEEECCCCCCEEEEECCCEEEEEHHHHHHCC AVALRGEVARQGAYNFKQGMKVSDIVSSVRTDLKQNADLNYALIVREINKQRDIEVLQFN EEEECHHHHHCCCCHHHHCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCEEEEEE LGEAIANPSSKENLSLKESDQIFVFNSGLDLDYWFKSYADAEVKVKHSEQKKNVERVDVE HHHHHCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHCCCCEEEEECCHHHCCCEEEECC TGAIIETQSVTTLKTEDIDTVSRGEQQIQKSREKLLTPIIDRLKSQATLDNPARLIEVSG CCCEEEECCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECC AVKYPGVYPLSRIGTIKQIILAAGGLTEEAYLDSAEWTVRDVNGSELIIEQKKISLRDAL CCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHCCCCCEEEEECCCCEEEEEECHHHHHHHH SVEGEKNFTLTGQDRLIVKTKPNWQEGYTIELQGEVMFPGAYSFTRGETLQEVIERAGGL CCCCCCCEEEECCCEEEEEECCCCCCCEEEEEECEEECCCCCCCCCCHHHHHHHHHHCCC TEYAYADGSVFSRERLKRLEEERLKILNMQLKQEIGNLALRRQNSSAQYTTPPGDAMLIA EEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCEECCCCCEEEEH DELAKTEAMGRMVISIPRAIEGDEIANLMLEKGDKLYIPARNPVISIMGEVQFASNQLFE HHHHHHHHHCCEEEECCCCCCCHHHHHHHHHCCCEEEECCCCCEEEEEECEEECCCCCCC PNMTVEEYIEVAGGTKKQADTDRIYVVRADGSVMVPNNSYWFSRSDKPLAPGDTIIVPLD CCCCHHHHHHHCCCCCCCCCCCEEEEEEECCEEECCCCCEEECCCCCCCCCCCEEEEECC TDYLDGLSTLTSATQILYQIGVAWSAIKD CHHHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MMMKRTLTASLFAMISTSTMAFTPSAEQMAQFQKLPKSQQEQLARQYGVDVSVLTGSASP CCCHHHHHHHHHHHHHCCEEEECCCHHHHHHHHHCCCHHHHHHHHHHCCEEEEEECCCCC VHRAKGKTEQQPVRASAPIVPSVADKSERFSAFGYDMFLGKVKTLTSVDNLPVPNDYVMA HHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEC PGDEVAIQIYGKSSEELNLVIDRQGRLNFPEFGPVAVSGQTFADMQKHLTGIIKQKMLGV CCCEEEEEEECCCCCCEEEEEECCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHH DVLVSMGAMRTMQVYVVGEATQPGAYNVNGLTTVTQALIASGGIKESGSLRYVELKRKGR HHHHHHCCCEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEECCCCC VVERFDVYDLLLKGDSRSDVRLLSGDTLYIPTKNSSVELHGAVKRPAIYELKGKTTLSRL EEHHHHHEEEEEECCCCCCEEEEECCEEEEECCCCCEEEEECCCCCEEEEECCCHHHHHH LSFGGGLQPNAFLSKINITRMGSNGYEQFTVDMSTSKGKNFIIKNGDKVVISKAAESLNN HHHCCCCCCCHHHEEEEEEEECCCCCEEEEEEECCCCCCEEEEECCCEEEEEHHHHHHCC AVALRGEVARQGAYNFKQGMKVSDIVSSVRTDLKQNADLNYALIVREINKQRDIEVLQFN EEEECHHHHHCCCCHHHHCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCEEEEEE LGEAIANPSSKENLSLKESDQIFVFNSGLDLDYWFKSYADAEVKVKHSEQKKNVERVDVE HHHHHCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHCCCCEEEEECCHHHCCCEEEECC TGAIIETQSVTTLKTEDIDTVSRGEQQIQKSREKLLTPIIDRLKSQATLDNPARLIEVSG CCCEEEECCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECC AVKYPGVYPLSRIGTIKQIILAAGGLTEEAYLDSAEWTVRDVNGSELIIEQKKISLRDAL CCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHCCCCCEEEEECCCCEEEEEECHHHHHHHH SVEGEKNFTLTGQDRLIVKTKPNWQEGYTIELQGEVMFPGAYSFTRGETLQEVIERAGGL CCCCCCCEEEECCCEEEEEECCCCCCCEEEEEECEEECCCCCCCCCCHHHHHHHHHHCCC TEYAYADGSVFSRERLKRLEEERLKILNMQLKQEIGNLALRRQNSSAQYTTPPGDAMLIA EEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCEECCCCCEEEEH DELAKTEAMGRMVISIPRAIEGDEIANLMLEKGDKLYIPARNPVISIMGEVQFASNQLFE HHHHHHHHHCCEEEECCCCCCCHHHHHHHHHCCCEEEECCCCCEEEEEECEEECCCCCCC PNMTVEEYIEVAGGTKKQADTDRIYVVRADGSVMVPNNSYWFSRSDKPLAPGDTIIVPLD CCCCHHHHHHHCCCCCCCCCCCEEEEEEECCEEECCCCCEEECCCCCCCCCCCEEEEECC TDYLDGLSTLTSATQILYQIGVAWSAIKD CHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8021185 [H]