| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is wzz [C]
Identifier: 209693886
GI number: 209693886
Start: 327417
End: 328394
Strand: Direct
Name: wzz [C]
Synonym: VSAL_I0278
Alternate gene names: 209693886
Gene position: 327417-328394 (Clockwise)
Preceding gene: 209693885
Following gene: 209693887
Centisome position: 9.85
GC content: 42.64
Gene sequence:
>978_bases ATGAATGAAAAACAACAACTGCCACATTCTCAACATTTAGCGTTTCCACCGGCAATGCCCGCCGACGACGAGATCGACTT ACGTGAGCTCTTTGGCGCACTGTGGAAAGGCAAATGGATAATCATAGCAACCACGTTTATTTTTGCTGTCGGTGGCGTAT TATTTGCGTTATCACAACCTAACACCTACAAAGCGGAAGTTGTATTAGCCCCTGCGGGCGAGAGCGGCGGTGGCCTTGCG GTAATGGCAGGAGAGTTAGGTGGCTTAGCCTCATTAGCAGGTATTAACATTGGCGGCGGTGGTACTGACAGCAAAGGTAT GTCATTAGCCGTTTTGCAATCTCGTCAATTCATTAATGCCTTTATTACCAAGCATGATTTGGTTGTACCGTTATTTGCAG GTACTGAATGGAATAAACAGTCGGGTGAGTTAATCATTGACCCTGAGGTTTATAATACAGAAACAAAAGAGTGGGTGCGT GAAGTTAAACCAGATGAGTCACCAGTACCAACAGATTGGCAAGCACACAAAGCGTTTAAAGGTTTTTTAAGTACCGCTGA TGCTAAAGACACGGGTTTAGTTACTTTATCCGTTACTCATATTTCTCCAATTATTGCTCAACAATGGGTAGAGTGGTTAG TGGCTGATTTGAACCTTTGGATGAAAGATAAGTCTCTTACTGAAACCAAACGTAATATCGGATATTTAGAGCAGCAGTTA CAAAAAACCGATATCTCTGACATGCGCTCAGTGTTTTATCAGTTAATTGAAGATCAAACTAAAAACCTGATGTTGGCAGA GGTTGAAGCGGAGTTTGCCTTTAAAACCATAGACCCAGCGGTTATTCCAGAAGAGAAAGCCGGACCAAAACGTGCCTTAA TTTGTGTGTTGTCAGTATTATTAGGCGGCATGTTAGGTGTGGCGGTGGTATTAGTGAGATTCGCATTTAGAAAAGAAGAA CTAGAAACTAGAAACTAG
Upstream 100 bases:
>100_bases TCTAACTCTCAAATATAAGGAAAACAAAGAGCATAAAGACTCAAAAAGCCAAATAAACCAAGCTTTTATAGTCTCTAGCC TCTAGTTTCTAGTTTCTAGC
Downstream 100 bases:
>100_bases AAACTAGAAAGATCAAGAGCAGTGATGCATTCTGCTCTTGATCTTTTTTTAGCTTTGGCTTTGCTTTTATAGGAGCGAAG CGGTCTAGTCTCTAGTTTCT
Product: O-antigen length determinant protein
Products: NA
Alternate protein names: Chain Length Determinant Protein; Lipopolysaccharide Biosynthesis; Chain Length Determinant Family Protein; OtnB Protein; O-Antigen Length Determinant Protein
Number of amino acids: Translated: 325; Mature: 325
Protein sequence:
>325_residues MNEKQQLPHSQHLAFPPAMPADDEIDLRELFGALWKGKWIIIATTFIFAVGGVLFALSQPNTYKAEVVLAPAGESGGGLA VMAGELGGLASLAGINIGGGGTDSKGMSLAVLQSRQFINAFITKHDLVVPLFAGTEWNKQSGELIIDPEVYNTETKEWVR EVKPDESPVPTDWQAHKAFKGFLSTADAKDTGLVTLSVTHISPIIAQQWVEWLVADLNLWMKDKSLTETKRNIGYLEQQL QKTDISDMRSVFYQLIEDQTKNLMLAEVEAEFAFKTIDPAVIPEEKAGPKRALICVLSVLLGGMLGVAVVLVRFAFRKEE LETRN
Sequences:
>Translated_325_residues MNEKQQLPHSQHLAFPPAMPADDEIDLRELFGALWKGKWIIIATTFIFAVGGVLFALSQPNTYKAEVVLAPAGESGGGLA VMAGELGGLASLAGINIGGGGTDSKGMSLAVLQSRQFINAFITKHDLVVPLFAGTEWNKQSGELIIDPEVYNTETKEWVR EVKPDESPVPTDWQAHKAFKGFLSTADAKDTGLVTLSVTHISPIIAQQWVEWLVADLNLWMKDKSLTETKRNIGYLEQQL QKTDISDMRSVFYQLIEDQTKNLMLAEVEAEFAFKTIDPAVIPEEKAGPKRALICVLSVLLGGMLGVAVVLVRFAFRKEE LETRN >Mature_325_residues MNEKQQLPHSQHLAFPPAMPADDEIDLRELFGALWKGKWIIIATTFIFAVGGVLFALSQPNTYKAEVVLAPAGESGGGLA VMAGELGGLASLAGINIGGGGTDSKGMSLAVLQSRQFINAFITKHDLVVPLFAGTEWNKQSGELIIDPEVYNTETKEWVR EVKPDESPVPTDWQAHKAFKGFLSTADAKDTGLVTLSVTHISPIIAQQWVEWLVADLNLWMKDKSLTETKRNIGYLEQQL QKTDISDMRSVFYQLIEDQTKNLMLAEVEAEFAFKTIDPAVIPEEKAGPKRALICVLSVLLGGMLGVAVVLVRFAFRKEE LETRN
Specific function: Part Of The Ferric Enterobactin Transport System. [C]
COG id: COG3206
COG function: function code M; Uncharacterized protein involved in exopolysaccharide biosynthesis
Gene ontology:
Cell location: Integral Membrane Protein. Inner Membrane [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 35710; Mature: 35710
Theoretical pI: Translated: 4.79; Mature: 4.79
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNEKQQLPHSQHLAFPPAMPADDEIDLRELFGALWKGKWIIIATTFIFAVGGVLFALSQP CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCEEEEHHHHHHHHHHHHEEECCC NTYKAEVVLAPAGESGGGLAVMAGELGGLASLAGINIGGGGTDSKGMSLAVLQSRQFINA CCEEEEEEEEECCCCCCCEEEEECCCCCHHHHHCEECCCCCCCCCCCEEEHHHHHHHHHH FITKHDLVVPLFAGTEWNKQSGELIIDPEVYNTETKEWVREVKPDESPVPTDWQAHKAFK HHHHCCEEEEEEECCCCCCCCCCEEECCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHH GFLSTADAKDTGLVTLSVTHISPIIAQQWVEWLVADLNLWMKDKSLTETKRNIGYLEQQL HHHHCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH QKTDISDMRSVFYQLIEDQTKNLMLAEVEAEFAFKTIDPAVIPEEKAGPKRALICVLSVL HHCCHHHHHHHHHHHHHHHHCCEEEEEEHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHH LGGMLGVAVVLVRFAFRKEELETRN HHHHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure MNEKQQLPHSQHLAFPPAMPADDEIDLRELFGALWKGKWIIIATTFIFAVGGVLFALSQP CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCEEEEHHHHHHHHHHHHEEECCC NTYKAEVVLAPAGESGGGLAVMAGELGGLASLAGINIGGGGTDSKGMSLAVLQSRQFINA CCEEEEEEEEECCCCCCCEEEEECCCCCHHHHHCEECCCCCCCCCCCEEEHHHHHHHHHH FITKHDLVVPLFAGTEWNKQSGELIIDPEVYNTETKEWVREVKPDESPVPTDWQAHKAFK HHHHCCEEEEEEECCCCCCCCCCEEECCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHH GFLSTADAKDTGLVTLSVTHISPIIAQQWVEWLVADLNLWMKDKSLTETKRNIGYLEQQL HHHHCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH QKTDISDMRSVFYQLIEDQTKNLMLAEVEAEFAFKTIDPAVIPEEKAGPKRALICVLSVL HHCCHHHHHHHHHHHHHHHHCCEEEEEEHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHH LGGMLGVAVVLVRFAFRKEELETRN HHHHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA