| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is 209693884
Identifier: 209693884
GI number: 209693884
Start: 323139
End: 324506
Strand: Direct
Name: 209693884
Synonym: VSAL_I0276
Alternate gene names: NA
Gene position: 323139-324506 (Clockwise)
Preceding gene: 209693879
Following gene: 209693885
Centisome position: 9.72
GC content: 42.84
Gene sequence:
>1368_bases GTGATTTTAAAAAACCGATTTGGTAAATATTTAATAATGCATACAGTAATGGCTAATTACACCAATAAAAAAAGAAGCCT CACGCCAATAGCCGCGGCATTAGCGTGTTGCTATTCGGCTATTACCTTTATGGCAACGCCAGCAATGGCATCCCCTTGGC TAGAAGCGAATGATCCTTTTTTACGCTCGTCATTACAGGTGTTGTCTGATTCTGGCGTAATATCGTCACCGACCAATCAA TACCCATTACGATGGTCTCTATTTGGTGATGATATTATCAATAATGATACCTCTCATGATTTGTCAGTGACGCTCGCCCA AAGAGAAGTGCGATACAGCATGAACTCGGCAAAACTTAATAGAGGCCAAAGCTCAGCTAAATTTGTCGCCAGTAATGAAG AGGCTCCATCAACTGGGTTCGGCCAATTTAGTAAAGATAAGTGGGGGGCATCTGCCAGCTACGAATATCTTGATACTAGC TATGCGTTTCGAGTGACGACCAGTTATTCAAACTATCAAGGCGAGGAAGAGATCCGCTGGGATGACTCCTATCTATCACT TAATCTAGGCGCTTGGTTATTCTCCATCGGAACGGTAGACAGATGGTGGGGGCAAGGTTGGCAACATAACCTAATTCTTG GGTCTTACGCCAAAGCCGATCCGGATATAAGTGCCAGCTATATTGGAAAAAACAGAGTACTAGGTGTCTGGAATATTGAA ACTGTCGTTGCGAAACCAGATGACGCCGAATTTAATTACCACAGTGCGACACGTCTTGTATCTAAGCCCTTTTCATTTTT TGAATATGGATTAACGTATCAAGTCTGGTTCGATAGTAATAACAGTAGCGATTCAGACGACAGCATTAAGCAAGCCGCCG TCGATGCTAAGTTAACGTTACCATCGATTAACGTCTCTAATGACAGTGCTGAAGAGCAAACCCATGTATATCACAGCGTA TATGCAGAGCTTGCCTCAACAGAGAACACCACAGAGTTAGGTGCCTTGCTATTAGGTTGGAGTGGCAGTGTTAATATAGA GGGGCAAACGGTACGGTTAGTACTTGAGTCTCAACAAAGCACCTCTGAGAATGAGGCGTCATTTAACGCTAACTCAAGTT ATGCTGTAGACAATAGTTATTCTGTTGCGCTCTATGTGCAAATGAGTAATGATCATAATGTAAGCCTGAGTTATCAGCAA TCTGAATGGGATGATACCCAGAGTAGCCAAAGTAAGACCACTCAAGCCAATTATCGATTGCCAGCCGCTTCAGGCATGGT GCATTTAGGGCTTGGCTACACACAAATGAAAACCACAACTGACGATGATCAAATTAATGCATCGTTAGGTTACGAATTTA GATTTTAG
Upstream 100 bases:
>100_bases ATACCTGCTAGTATTTATATTCACAATAAAAATGCGCTTAAATAAATGCCATGTCTTATATGTATCATTTCTCACATTGC TGATATAATACTCGCCTTAT
Downstream 100 bases:
>100_bases CGATTTATCTTAGTTTGACCGACCCTTTTATTTTTTAACTGATTTTTCACAAGTGAATAAATAACAAAATGATGATGAAA AGAACCCTTACCGCCAGCTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 455; Mature: 455
Protein sequence:
>455_residues MILKNRFGKYLIMHTVMANYTNKKRSLTPIAAALACCYSAITFMATPAMASPWLEANDPFLRSSLQVLSDSGVISSPTNQ YPLRWSLFGDDIINNDTSHDLSVTLAQREVRYSMNSAKLNRGQSSAKFVASNEEAPSTGFGQFSKDKWGASASYEYLDTS YAFRVTTSYSNYQGEEEIRWDDSYLSLNLGAWLFSIGTVDRWWGQGWQHNLILGSYAKADPDISASYIGKNRVLGVWNIE TVVAKPDDAEFNYHSATRLVSKPFSFFEYGLTYQVWFDSNNSSDSDDSIKQAAVDAKLTLPSINVSNDSAEEQTHVYHSV YAELASTENTTELGALLLGWSGSVNIEGQTVRLVLESQQSTSENEASFNANSSYAVDNSYSVALYVQMSNDHNVSLSYQQ SEWDDTQSSQSKTTQANYRLPAASGMVHLGLGYTQMKTTTDDDQINASLGYEFRF
Sequences:
>Translated_455_residues MILKNRFGKYLIMHTVMANYTNKKRSLTPIAAALACCYSAITFMATPAMASPWLEANDPFLRSSLQVLSDSGVISSPTNQ YPLRWSLFGDDIINNDTSHDLSVTLAQREVRYSMNSAKLNRGQSSAKFVASNEEAPSTGFGQFSKDKWGASASYEYLDTS YAFRVTTSYSNYQGEEEIRWDDSYLSLNLGAWLFSIGTVDRWWGQGWQHNLILGSYAKADPDISASYIGKNRVLGVWNIE TVVAKPDDAEFNYHSATRLVSKPFSFFEYGLTYQVWFDSNNSSDSDDSIKQAAVDAKLTLPSINVSNDSAEEQTHVYHSV YAELASTENTTELGALLLGWSGSVNIEGQTVRLVLESQQSTSENEASFNANSSYAVDNSYSVALYVQMSNDHNVSLSYQQ SEWDDTQSSQSKTTQANYRLPAASGMVHLGLGYTQMKTTTDDDQINASLGYEFRF >Mature_455_residues MILKNRFGKYLIMHTVMANYTNKKRSLTPIAAALACCYSAITFMATPAMASPWLEANDPFLRSSLQVLSDSGVISSPTNQ YPLRWSLFGDDIINNDTSHDLSVTLAQREVRYSMNSAKLNRGQSSAKFVASNEEAPSTGFGQFSKDKWGASASYEYLDTS YAFRVTTSYSNYQGEEEIRWDDSYLSLNLGAWLFSIGTVDRWWGQGWQHNLILGSYAKADPDISASYIGKNRVLGVWNIE TVVAKPDDAEFNYHSATRLVSKPFSFFEYGLTYQVWFDSNNSSDSDDSIKQAAVDAKLTLPSINVSNDSAEEQTHVYHSV YAELASTENTTELGALLLGWSGSVNIEGQTVRLVLESQQSTSENEASFNANSSYAVDNSYSVALYVQMSNDHNVSLSYQQ SEWDDTQSSQSKTTQANYRLPAASGMVHLGLGYTQMKTTTDDDQINASLGYEFRF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 50628; Mature: 50628
Theoretical pI: Translated: 4.54; Mature: 4.54
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MILKNRFGKYLIMHTVMANYTNKKRSLTPIAAALACCYSAITFMATPAMASPWLEANDPF CCCCHHHCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHH LRSSLQVLSDSGVISSPTNQYPLRWSLFGDDIINNDTSHDLSVTLAQREVRYSMNSAKLN HHHHHHHHHCCCCCCCCCCCCCEEEEEECCHHHCCCCCCCEEEEEEHHHHHHHHCHHHCC RGQSSAKFVASNEEAPSTGFGQFSKDKWGASASYEYLDTSYAFRVTTSYSNYQGEEEIRW CCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCEEEECCCEEEEEEECCCCCCCCCCEEE DDSYLSLNLGAWLFSIGTVDRWWGQGWQHNLILGSYAKADPDISASYIGKNRVLGVWNIE CCCEEEEEHHHHEEECCCHHHHHCCCCCCCEEEECCCCCCCCCCCEECCCCCEEEEEEEE TVVAKPDDAEFNYHSATRLVSKPFSFFEYGLTYQVWFDSNNSSDSDDSIKQAAVDAKLTL EEEECCCCCCCCHHHHHHHHHCCHHHHHCCCEEEEEECCCCCCCCHHHHHHHHCCCEEEE PSINVSNDSAEEQTHVYHSVYAELASTENTTELGALLLGWSGSVNIEGQTVRLVLESQQS CEEECCCCCCHHHHHHHHHHHHHHHCCCCCHHHEEEEEECCCCEEECCCEEEEEEECCCC TSENEASFNANSSYAVDNSYSVALYVQMSNDHNVSLSYQQSEWDDTQSSQSKTTQANYRL CCCCCCCCCCCCCEEECCCEEEEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCEEC PAASGMVHLGLGYTQMKTTTDDDQINASLGYEFRF CCCCCEEEECCCEEEEECCCCCCCEEEEECEEECC >Mature Secondary Structure MILKNRFGKYLIMHTVMANYTNKKRSLTPIAAALACCYSAITFMATPAMASPWLEANDPF CCCCHHHCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHH LRSSLQVLSDSGVISSPTNQYPLRWSLFGDDIINNDTSHDLSVTLAQREVRYSMNSAKLN HHHHHHHHHCCCCCCCCCCCCCEEEEEECCHHHCCCCCCCEEEEEEHHHHHHHHCHHHCC RGQSSAKFVASNEEAPSTGFGQFSKDKWGASASYEYLDTSYAFRVTTSYSNYQGEEEIRW CCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCEEEECCCEEEEEEECCCCCCCCCCEEE DDSYLSLNLGAWLFSIGTVDRWWGQGWQHNLILGSYAKADPDISASYIGKNRVLGVWNIE CCCEEEEEHHHHEEECCCHHHHHCCCCCCCEEEECCCCCCCCCCCEECCCCCEEEEEEEE TVVAKPDDAEFNYHSATRLVSKPFSFFEYGLTYQVWFDSNNSSDSDDSIKQAAVDAKLTL EEEECCCCCCCCHHHHHHHHHCCHHHHHCCCEEEEEECCCCCCCCHHHHHHHHCCCEEEE PSINVSNDSAEEQTHVYHSVYAELASTENTTELGALLLGWSGSVNIEGQTVRLVLESQQS CEEECCCCCCHHHHHHHHHHHHHHHCCCCCHHHEEEEEECCCCEEECCCEEEEEEECCCC TSENEASFNANSSYAVDNSYSVALYVQMSNDHNVSLSYQQSEWDDTQSSQSKTTQANYRL CCCCCCCCCCCCCEEECCCEEEEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCEEC PAASGMVHLGLGYTQMKTTTDDDQINASLGYEFRF CCCCCEEEECCCEEEEECCCCCCCEEEEECEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA