| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
Click here to switch to the map view.
The map label for this gene is iucC [H]
Identifier: 209693758
GI number: 209693758
Start: 172803
End: 175262
Strand: Direct
Name: iucC [H]
Synonym: VSAL_I0136
Alternate gene names: 209693758
Gene position: 172803-175262 (Clockwise)
Preceding gene: 209693757
Following gene: 209693759
Centisome position: 5.2
GC content: 39.67
Gene sequence:
>2460_bases ATGACAGATTTCACAGCCAAAGCTCAATGTAGCTTTACGGATCGTTACGCGCCAAAAAAAGACCAATTAATCAATATCTC TGAATTTGAGTTCAGAAATTACAACGAAGACACCGATTTTAGCGTTATTAATCAATGGTTATCTCAGAGTTATTCATCGT ATTGGGGAATGAATGAACTTACCGAAGATCAGCGCAACCTTGAGCTAAAAAACACAGCCCATAAATTTGGACTGGTGGGA CTAAAACGCGGAAAAATACTGTTTTATACCGAGCTATATCATCCAGCGAAAGACGAAATAGGTGAGCATTACCCAGTTCA AGAAGGTGACTGTGGCATGCACTTGATTATCGCTCCCGTTGATATTCCAGAGCATCGTTTAAGTCAAAACGTCATTACCG CAATCTCGTCATTAATTTTAGAACACCTGCCTTTTACAAGGCTCGTTGTTGAACCGGATATCCAAAATGAGAAAGTACAC CGTTTAAACCACTTAATAGGTATTGAGTACAGTCAAATCGTTCCGCTTAACAGCAAAACCGCAAAATTAGGGTTTGCTAC TAAGTCACAATTTTTGCAGTCACAAGGGAAAGTATCTTCAATGAAAAATAGCAGTAAGAATCCATCATTATCACTCGCCA CTTCTCATTTAACGACAGAGTATTGGCATAAAGCGAATCAACATTTAATCGCGAAAATGATCACCGAGTTGAGCCATGAG CAAATCATCACACCGATAAAATTAGATGATGCATCAAATGCACAAGCCGCCTCTTGGTGTATCACCTTCAACTCGGATAC GGGAACGTCTGAATACCTCTTTCGTGCACGCCAATATCAACTCGATCATTTATTTGTTGAACCACAATCAATCACTTGCA CTAAAGATGATAAAAACCAACCTCTTGATGCCGTCTCTTTTATTCTTTCTTGTCGTCACCTTCTTGAGATCAGTGATGCA TTGTTACCTACGTATTTAGAGGAAATCACTAGCACGCTATACAGCAAAGCCTATAAGCTCATGCACCAAAATAAGACCTC AGCTCAATTAGCGAATGCAAGCTACCAAGAGATTGAAGCTGCCATGACAGAAGGTCATCCAGTATTCATTGCTAATAACG GCAGAATTGGCTTTGATATGTTAGATCATGTTGAATTTTCACCAGAAAGTGGACAATCATTAAATTTACAATGGATTGCA GTGCTGCGTGAAAAAACAAGCTTTGCCGTCATCGAATCATTAAGCTACGACCGCCTAATTTTTGATGAATTAGGTCAATC ACAACTGAATGAGTTCAATCAACAACTCTCTATGCAAGGGCTTGAACCATCACATTATTACTTAATGCCCATCCACCCAT GGCAATGGCGAGAAAAAATATCACGTATCTTCGCCGCTGATATCGCCAATCAGTATGTAGTTCCTCTTGGCACGACGGAA GATAAGTATCAAGCACAGCAATCTATTCGAACCTTTTTTAACCTTTCTTCACCAGAAAAGTGCTATGTGAAAACCGCCTT ATCGATTTTAAATATGGGCTTCATGCGTGGGTTATCTCCGTATTACATGAGCCGAACACCGGCTATCAATACGTTCATTG CAAACCTCATTGAAACCGATCCCTACTTTGCTAAAAAGCAATTTTTTGTTCTTAAAGAAGTCGCGGCAATAGGCTATCAC CACAGCTACTATGAGCAAGCTACTCGCACTGACAATCCTTATAAAAAAATGCTTTCTTCTTTATGGCGTGAAAGTCCATA CGCACCAGATCAACATGGCAATGTATTGGTAAACAAGCAGCAAAAACTACTGACAATGGCTTCATTACTGCATGTTGATG ACCAAGGAAAAAGCCTGATATCAGCGTTAATGGCCGATTCGCCGTTGTCTGATCATAACTGGCTTAAGCAGTACATGGAT CTTTATCTACAACCTCTTCTGCACAGCTTTTTTGCTTATGATCTTGTCTTTATGCCACACGGTGAAAACTTAATTTTAGT ACTTGAAGACAACAGCCCAATCAAAATAATCATGAAAGACATCGGGGAAGAAGTGGCCATTTTAAATGGAGAAAAAACTC TACCAAATGACATGAATTGCTTGGCAGTTGATCTTGAAGACCCAATGAAACTTAACTACATTTTGCTCGATATTTTTGAT TGTATTTTCCGATTCATCGCTCCATTGCTTGAGCAACAAACTCAGGTTAGCGAATCTGATTTTTGGGAGATAGTTGCCGA TTCAGTCAAAGACTACCAACAAGAACACCCGCAATTTGATGCGAAATATCAACGTTACGATCTGTATTGCAGCTCGTTCG CCCGTACCTGCCTAAATCGAATTCAACTAAACAATAATCAGCAAATGATTGACCTTGAAGATAGAGAAAAGAACTTACGT TTTGCTGAGGATATTGCAAACCCTCTCGCTCTATTTGCTAAGACTCATCGCATTATTTAG
Upstream 100 bases:
>100_bases GTAGAAAAATCCATCGCCTTTCAGCAATTCTCTCCTCCAAATTGCGAAAGTCATTTATATAACGCAACCACTGAACACTC ACTCGAATAAAGAGATAACG
Downstream 100 bases:
>100_bases TTCACTGACTTTTAGGCCAAACAATGACATTGAATACGAACATGACATCACCAAAAATACCGACATACTCACTTTTCTAT GGGTTATCTTGTGTTTTAAC
Product: siderophore biosynthesis protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 819; Mature: 818
Protein sequence:
>819_residues MTDFTAKAQCSFTDRYAPKKDQLINISEFEFRNYNEDTDFSVINQWLSQSYSSYWGMNELTEDQRNLELKNTAHKFGLVG LKRGKILFYTELYHPAKDEIGEHYPVQEGDCGMHLIIAPVDIPEHRLSQNVITAISSLILEHLPFTRLVVEPDIQNEKVH RLNHLIGIEYSQIVPLNSKTAKLGFATKSQFLQSQGKVSSMKNSSKNPSLSLATSHLTTEYWHKANQHLIAKMITELSHE QIITPIKLDDASNAQAASWCITFNSDTGTSEYLFRARQYQLDHLFVEPQSITCTKDDKNQPLDAVSFILSCRHLLEISDA LLPTYLEEITSTLYSKAYKLMHQNKTSAQLANASYQEIEAAMTEGHPVFIANNGRIGFDMLDHVEFSPESGQSLNLQWIA VLREKTSFAVIESLSYDRLIFDELGQSQLNEFNQQLSMQGLEPSHYYLMPIHPWQWREKISRIFAADIANQYVVPLGTTE DKYQAQQSIRTFFNLSSPEKCYVKTALSILNMGFMRGLSPYYMSRTPAINTFIANLIETDPYFAKKQFFVLKEVAAIGYH HSYYEQATRTDNPYKKMLSSLWRESPYAPDQHGNVLVNKQQKLLTMASLLHVDDQGKSLISALMADSPLSDHNWLKQYMD LYLQPLLHSFFAYDLVFMPHGENLILVLEDNSPIKIIMKDIGEEVAILNGEKTLPNDMNCLAVDLEDPMKLNYILLDIFD CIFRFIAPLLEQQTQVSESDFWEIVADSVKDYQQEHPQFDAKYQRYDLYCSSFARTCLNRIQLNNNQQMIDLEDREKNLR FAEDIANPLALFAKTHRII
Sequences:
>Translated_819_residues MTDFTAKAQCSFTDRYAPKKDQLINISEFEFRNYNEDTDFSVINQWLSQSYSSYWGMNELTEDQRNLELKNTAHKFGLVG LKRGKILFYTELYHPAKDEIGEHYPVQEGDCGMHLIIAPVDIPEHRLSQNVITAISSLILEHLPFTRLVVEPDIQNEKVH RLNHLIGIEYSQIVPLNSKTAKLGFATKSQFLQSQGKVSSMKNSSKNPSLSLATSHLTTEYWHKANQHLIAKMITELSHE QIITPIKLDDASNAQAASWCITFNSDTGTSEYLFRARQYQLDHLFVEPQSITCTKDDKNQPLDAVSFILSCRHLLEISDA LLPTYLEEITSTLYSKAYKLMHQNKTSAQLANASYQEIEAAMTEGHPVFIANNGRIGFDMLDHVEFSPESGQSLNLQWIA VLREKTSFAVIESLSYDRLIFDELGQSQLNEFNQQLSMQGLEPSHYYLMPIHPWQWREKISRIFAADIANQYVVPLGTTE DKYQAQQSIRTFFNLSSPEKCYVKTALSILNMGFMRGLSPYYMSRTPAINTFIANLIETDPYFAKKQFFVLKEVAAIGYH HSYYEQATRTDNPYKKMLSSLWRESPYAPDQHGNVLVNKQQKLLTMASLLHVDDQGKSLISALMADSPLSDHNWLKQYMD LYLQPLLHSFFAYDLVFMPHGENLILVLEDNSPIKIIMKDIGEEVAILNGEKTLPNDMNCLAVDLEDPMKLNYILLDIFD CIFRFIAPLLEQQTQVSESDFWEIVADSVKDYQQEHPQFDAKYQRYDLYCSSFARTCLNRIQLNNNQQMIDLEDREKNLR FAEDIANPLALFAKTHRII >Mature_818_residues TDFTAKAQCSFTDRYAPKKDQLINISEFEFRNYNEDTDFSVINQWLSQSYSSYWGMNELTEDQRNLELKNTAHKFGLVGL KRGKILFYTELYHPAKDEIGEHYPVQEGDCGMHLIIAPVDIPEHRLSQNVITAISSLILEHLPFTRLVVEPDIQNEKVHR LNHLIGIEYSQIVPLNSKTAKLGFATKSQFLQSQGKVSSMKNSSKNPSLSLATSHLTTEYWHKANQHLIAKMITELSHEQ IITPIKLDDASNAQAASWCITFNSDTGTSEYLFRARQYQLDHLFVEPQSITCTKDDKNQPLDAVSFILSCRHLLEISDAL LPTYLEEITSTLYSKAYKLMHQNKTSAQLANASYQEIEAAMTEGHPVFIANNGRIGFDMLDHVEFSPESGQSLNLQWIAV LREKTSFAVIESLSYDRLIFDELGQSQLNEFNQQLSMQGLEPSHYYLMPIHPWQWREKISRIFAADIANQYVVPLGTTED KYQAQQSIRTFFNLSSPEKCYVKTALSILNMGFMRGLSPYYMSRTPAINTFIANLIETDPYFAKKQFFVLKEVAAIGYHH SYYEQATRTDNPYKKMLSSLWRESPYAPDQHGNVLVNKQQKLLTMASLLHVDDQGKSLISALMADSPLSDHNWLKQYMDL YLQPLLHSFFAYDLVFMPHGENLILVLEDNSPIKIIMKDIGEEVAILNGEKTLPNDMNCLAVDLEDPMKLNYILLDIFDC IFRFIAPLLEQQTQVSESDFWEIVADSVKDYQQEHPQFDAKYQRYDLYCSSFARTCLNRIQLNNNQQMIDLEDREKNLRF AEDIANPLALFAKTHRII
Specific function: Unknown
COG id: COG4264
COG function: function code Q; Siderophore synthetase component
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the iucC family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007310 - InterPro: IPR022770 [H]
Pfam domain/function: PF06276 FhuF; PF04183 IucA_IucC [H]
EC number: NA
Molecular weight: Translated: 94226; Mature: 94095
Theoretical pI: Translated: 5.47; Mature: 5.47
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDFTAKAQCSFTDRYAPKKDQLINISEFEFRNYNEDTDFSVINQWLSQSYSSYWGMNEL CCCCCCCCCCCCCCCCCCCCCCEECCCHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCHHH TEDQRNLELKNTAHKFGLVGLKRGKILFYTELYHPAKDEIGEHYPVQEGDCGMHLIIAPV HHHHHCCCHHHHHHHHCCEEEECCCEEEEEECCCCCHHHCCCCCCCCCCCCCEEEEEEEC DIPEHRLSQNVITAISSLILEHLPFTRLVVEPDIQNEKVHRLNHLIGIEYSQIVPLNSKT CCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHCCCHHHEECCCCCC AKLGFATKSQFLQSQGKVSSMKNSSKNPSLSLATSHLTTEYWHKANQHLIAKMITELSHE CEECCHHHHHHHHHCCCHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHH QIITPIKLDDASNAQAASWCITFNSDTGTSEYLFRARQYQLDHLFVEPQSITCTKDDKNQ HCCCCEEECCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHCCEEEECCCCEEECCCCCCC PLDAVSFILSCRHLLEISDALLPTYLEEITSTLYSKAYKLMHQNKTSAQLANASYQEIEA CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCHHHHHHH AMTEGHPVFIANNGRIGFDMLDHVEFSPESGQSLNLQWIAVLREKTSFAVIESLSYDRLI HHHCCCEEEEECCCEECCHHHHCCCCCCCCCCCCCCEEEEEHHHCHHHHHHHHCCCCHHH FDELGQSQLNEFNQQLSMQGLEPSHYYLMPIHPWQWREKISRIFAADIANQYVVPLGTTE HHHCCHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCEEEECCCCH DKYQAQQSIRTFFNLSSPEKCYVKTALSILNMGFMRGLSPYYMSRTPAINTFIANLIETD HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHCC PYFAKKQFFVLKEVAAIGYHHSYYEQATRTDNPYKKMLSSLWRESPYAPDQHGNVLVNKQ CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCH QKLLTMASLLHVDDQGKSLISALMADSPLSDHNWLKQYMDLYLQPLLHSFFAYDLVFMPH HHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEEEEC GENLILVLEDNSPIKIIMKDIGEEVAILNGEKTLPNDMNCLAVDLEDPMKLNYILLDIFD CCCEEEEEECCCCHHHHHHHCCCCEEEECCCCCCCCCCCEEEEECCCCCCHHHHHHHHHH CIFRFIAPLLEQQTQVSESDFWEIVADSVKDYQQEHPQFDAKYQRYDLYCSSFARTCLNR HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH IQLNNNQQMIDLEDREKNLRFAEDIANPLALFAKTHRII HEECCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure TDFTAKAQCSFTDRYAPKKDQLINISEFEFRNYNEDTDFSVINQWLSQSYSSYWGMNEL CCCCCCCCCCCCCCCCCCCCCEECCCHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCHHH TEDQRNLELKNTAHKFGLVGLKRGKILFYTELYHPAKDEIGEHYPVQEGDCGMHLIIAPV HHHHHCCCHHHHHHHHCCEEEECCCEEEEEECCCCCHHHCCCCCCCCCCCCCEEEEEEEC DIPEHRLSQNVITAISSLILEHLPFTRLVVEPDIQNEKVHRLNHLIGIEYSQIVPLNSKT CCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHCCCHHHEECCCCCC AKLGFATKSQFLQSQGKVSSMKNSSKNPSLSLATSHLTTEYWHKANQHLIAKMITELSHE CEECCHHHHHHHHHCCCHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHH QIITPIKLDDASNAQAASWCITFNSDTGTSEYLFRARQYQLDHLFVEPQSITCTKDDKNQ HCCCCEEECCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHCCEEEECCCCEEECCCCCCC PLDAVSFILSCRHLLEISDALLPTYLEEITSTLYSKAYKLMHQNKTSAQLANASYQEIEA CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCHHHHHHH AMTEGHPVFIANNGRIGFDMLDHVEFSPESGQSLNLQWIAVLREKTSFAVIESLSYDRLI HHHCCCEEEEECCCEECCHHHHCCCCCCCCCCCCCCEEEEEHHHCHHHHHHHHCCCCHHH FDELGQSQLNEFNQQLSMQGLEPSHYYLMPIHPWQWREKISRIFAADIANQYVVPLGTTE HHHCCHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCEEEECCCCH DKYQAQQSIRTFFNLSSPEKCYVKTALSILNMGFMRGLSPYYMSRTPAINTFIANLIETD HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHCC PYFAKKQFFVLKEVAAIGYHHSYYEQATRTDNPYKKMLSSLWRESPYAPDQHGNVLVNKQ CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCH QKLLTMASLLHVDDQGKSLISALMADSPLSDHNWLKQYMDLYLQPLLHSFFAYDLVFMPH HHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEEEEC GENLILVLEDNSPIKIIMKDIGEEVAILNGEKTLPNDMNCLAVDLEDPMKLNYILLDIFD CCCEEEEEECCCCHHHHHHHCCCCEEEECCCCCCCCCCCEEEEECCCCCCHHHHHHHHHH CIFRFIAPLLEQQTQVSESDFWEIVADSVKDYQQEHPQFDAKYQRYDLYCSSFARTCLNR HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH IQLNNNQQMIDLEDREKNLRFAEDIANPLALFAKTHRII HEECCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11274118; 11481432 [H]