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The map label for this gene is dppC [H]

Identifier: 209693720

GI number: 209693720

Start: 131168

End: 132109

Strand: Direct

Name: dppC [H]

Synonym: VSAL_I0097

Alternate gene names: 209693720

Gene position: 131168-132109 (Clockwise)

Preceding gene: 209693719

Following gene: 209693721

Centisome position: 3.94

GC content: 42.46

Gene sequence:

>942_bases
ATGAACACGACAACTAACCGCGTTCCAACGCGTTGGGAACGATTTAAATCATCGGATTTTTTGTACTATTTCTTACGTGA
CAAAGTAGCAATGTTTAGCTTTGCTGTTTTTGTTGTGTTTGTATTAGGGGCGCTACTTTCACCCGTTCTAGCACCAAGTA
ATCCATACGATCTAAGTTCTATCGACATCATGGATTCAGAATTGCCACCTTCTTGGATGGAGGAAGGAGATGAACGTTTT
CTTCTCGGAACCGATGACCAAGGTCGAGATGTACTTTCAACGATTCTTTATGGTTCACGTTTATCACTGACGATTGGTTT
TCTAGCGGTAGCAGTACAACTGACTCTCGGTATCGTTATTGGTCTTTCTGCGGGCTATTTCGGTGGACGAATTGATAGCT
TCTTAATGCGCTTTGCGGATGTGCAGTTATCATTCTCAACCATGATGGTTGCGATTATCGTTTCAGCTATCTTTAAAGCC
AGTTTTGGAACCGAATTCTTTAGTCAGTACGCGGTGATCATGTTGGTTGTGATTATTGGTATTGCTGAATGGCCACAATA
TGCACGTACTATTCGCGCCTCTGTATTGGCCGAGAAACAAAAAGAATACGTTGAAGCGGCTAAAGTGATGGGGTTCCGTT
CGCCAAGAATCATGTTTCGTCATATTCTGCCGAACTGTTTGTCTCCCATTTTGGTTATTTCTACGGTACAGATTGCAAAT
GCGATTATGTCTGAGGCGGCTCTGTCCTTCTTAGGTTTAGGCCTACCGGTAGACCAACCTTCATTAGGCTCATTAATCAG
TATTGGTTTTAACTATATCTTCTCTGGGTCGTGGTGGATTACCGCTTTCCCTGGATTAGTATTAGTGGCCCTCGTTCTTG
TGATTAATTTACTGGGCGATTGGCTGAGAGACGTGTTTAATCCTAAAATTTATAAGGGTTAA

Upstream 100 bases:

>100_bases
TCTTTGTAGGTTTGATCTTCGTCGTAACCAATACGATTGTCGATTTGTTATATGGATTAATTAACCCAACGGTAGATATT
ACAGGGAAAGGAGCGTAATC

Downstream 100 bases:

>100_bases
TAGAAGAAAGCATATAGAAAGCGGTGATTGAATCATCGCTTTTTTTTGTTGTGTATAACGTGAATATTGTCTTACAAACT
AAGATTACCGTCTTATTTTG

Product: binding-protein-dependent transport system,inner membrane component

Products: ADP; phosphate; dipeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 313; Mature: 313

Protein sequence:

>313_residues
MNTTTNRVPTRWERFKSSDFLYYFLRDKVAMFSFAVFVVFVLGALLSPVLAPSNPYDLSSIDIMDSELPPSWMEEGDERF
LLGTDDQGRDVLSTILYGSRLSLTIGFLAVAVQLTLGIVIGLSAGYFGGRIDSFLMRFADVQLSFSTMMVAIIVSAIFKA
SFGTEFFSQYAVIMLVVIIGIAEWPQYARTIRASVLAEKQKEYVEAAKVMGFRSPRIMFRHILPNCLSPILVISTVQIAN
AIMSEAALSFLGLGLPVDQPSLGSLISIGFNYIFSGSWWITAFPGLVLVALVLVINLLGDWLRDVFNPKIYKG

Sequences:

>Translated_313_residues
MNTTTNRVPTRWERFKSSDFLYYFLRDKVAMFSFAVFVVFVLGALLSPVLAPSNPYDLSSIDIMDSELPPSWMEEGDERF
LLGTDDQGRDVLSTILYGSRLSLTIGFLAVAVQLTLGIVIGLSAGYFGGRIDSFLMRFADVQLSFSTMMVAIIVSAIFKA
SFGTEFFSQYAVIMLVVIIGIAEWPQYARTIRASVLAEKQKEYVEAAKVMGFRSPRIMFRHILPNCLSPILVISTVQIAN
AIMSEAALSFLGLGLPVDQPSLGSLISIGFNYIFSGSWWITAFPGLVLVALVLVINLLGDWLRDVFNPKIYKG
>Mature_313_residues
MNTTTNRVPTRWERFKSSDFLYYFLRDKVAMFSFAVFVVFVLGALLSPVLAPSNPYDLSSIDIMDSELPPSWMEEGDERF
LLGTDDQGRDVLSTILYGSRLSLTIGFLAVAVQLTLGIVIGLSAGYFGGRIDSFLMRFADVQLSFSTMMVAIIVSAIFKA
SFGTEFFSQYAVIMLVVIIGIAEWPQYARTIRASVLAEKQKEYVEAAKVMGFRSPRIMFRHILPNCLSPILVISTVQIAN
AIMSEAALSFLGLGLPVDQPSLGSLISIGFNYIFSGSWWITAFPGLVLVALVLVINLLGDWLRDVFNPKIYKG

Specific function: Part of the binding-protein-dependent transport system for dipeptides; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1173

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789964, Length=296, Percent_Identity=39.1891891891892, Blast_Score=185, Evalue=3e-48,
Organism=Escherichia coli, GI1787760, Length=303, Percent_Identity=32.3432343234323, Blast_Score=155, Evalue=3e-39,
Organism=Escherichia coli, GI1787054, Length=305, Percent_Identity=31.8032786885246, Blast_Score=142, Evalue=3e-35,
Organism=Escherichia coli, GI1787498, Length=286, Percent_Identity=35.3146853146853, Blast_Score=128, Evalue=5e-31,
Organism=Escherichia coli, GI1789889, Length=257, Percent_Identity=32.6848249027237, Blast_Score=123, Evalue=2e-29,
Organism=Escherichia coli, GI1788505, Length=228, Percent_Identity=31.5789473684211, Blast_Score=119, Evalue=2e-28,
Organism=Escherichia coli, GI1787549, Length=249, Percent_Identity=31.3253012048193, Blast_Score=115, Evalue=5e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 34699; Mature: 34699

Theoretical pI: Translated: 5.36; Mature: 5.36

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTTTNRVPTRWERFKSSDFLYYFLRDKVAMFSFAVFVVFVLGALLSPVLAPSNPYDLSS
CCCCCCCCCHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
IDIMDSELPPSWMEEGDERFLLGTDDQGRDVLSTILYGSRLSLTIGFLAVAVQLTLGIVI
CCCCCCCCCCHHHCCCCCEEEECCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
GLSAGYFGGRIDSFLMRFADVQLSFSTMMVAIIVSAIFKASFGTEFFSQYAVIMLVVIIG
HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
IAEWPQYARTIRASVLAEKQKEYVEAAKVMGFRSPRIMFRHILPNCLSPILVISTVQIAN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
AIMSEAALSFLGLGLPVDQPSLGSLISIGFNYIFSGSWWITAFPGLVLVALVLVINLLGD
HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
WLRDVFNPKIYKG
HHHHHCCCCCCCC
>Mature Secondary Structure
MNTTTNRVPTRWERFKSSDFLYYFLRDKVAMFSFAVFVVFVLGALLSPVLAPSNPYDLSS
CCCCCCCCCHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
IDIMDSELPPSWMEEGDERFLLGTDDQGRDVLSTILYGSRLSLTIGFLAVAVQLTLGIVI
CCCCCCCCCCHHHCCCCCEEEECCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
GLSAGYFGGRIDSFLMRFADVQLSFSTMMVAIIVSAIFKASFGTEFFSQYAVIMLVVIIG
HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
IAEWPQYARTIRASVLAEKQKEYVEAAKVMGFRSPRIMFRHILPNCLSPILVISTVQIAN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
AIMSEAALSFLGLGLPVDQPSLGSLISIGFNYIFSGSWWITAFPGLVLVALVLVINLLGD
HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
WLRDVFNPKIYKG
HHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; dipeptides [Periplasm]; H2O [C]

Specific reaction: ATP + dipeptides [Periplasm] + H2O = ADP + phosphate + dipeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800; 8550458 [H]