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The map label for this gene is dppB [H]

Identifier: 209693719

GI number: 209693719

Start: 130188

End: 131165

Strand: Direct

Name: dppB [H]

Synonym: VSAL_I0096

Alternate gene names: 209693719

Gene position: 130188-131165 (Clockwise)

Preceding gene: 209693718

Following gene: 209693720

Centisome position: 3.92

GC content: 40.29

Gene sequence:

>978_bases
ATGTTTACGTTTCTGGTCAAGCGCCTGTTTCAGGCTCTGATAGTGATGTTTGTGATCAGTCTGGTTGCGTTTTCCATTCA
AGATAACTTGGGTGACCCGTTACGTGAATTGGTTGGACAATCAGTTTCAGAATCCGAGCGTCAAGCTCTGAGAGATGATC
TTGGGTTAAATGACCCATTCGTCACAAAGTATACTCGTTTTATTACTAATGCGGTTCAAGGTGACTTGGGCACGTCTTAC
TTCTTTAAAAAACCAGCGGTTGAAGTCATTCTTGATAAGCTCGTTGCCACTCTTGAATTGGTGTTGGGATCGGCGTTAAT
CATTATCTGTTTATCGATACCTCTTGGTGTGTATTCTGCGATTCATCCCAAAAGCTTTTTTACCAAAGCGATCATGGCGT
TCAGTAGTATTGGTATTTCGATACCGGTCTTCTTAACGGCAATCATGCTGATGTATGTGTTTTCTATTGAGTTAAATTGG
TTACCGTCTTATGGGCGAGGAGAGACTTATAATTTACTCGGTTGGGAATCTGGATTCTTTACTATTGATGGCTTGGCACA
TTTAGTATTGCCATGTGTGTCTCTTGCCTCAATTATGCTGCCTTTATTTATTCGTTTGGTTCGCTCAGAAATGATCGAAG
TACTGAGTTCTGAATACATCAAGTTTGCAAAAGCAAAAGGCATCGCAACAAACAAAATTTATTATCAACATGCGCTTAAA
AATACCATGTTACCGGTACTTACTGTGGGTGGTGTTCAAATCGGTACGATGGTGGCTTATACCATTCTTACTGAAACGGT
ATTCCAATGGCCGGGTACTGGTTTCTTATTTTTAGAAGCGATTAACCGTGTCGATACTCCATTGATTACGGCTTACGTTA
TCTTTGTAGGTTTGATCTTCGTCGTAACCAATACGATTGTCGATTTGTTATATGGATTAATTAACCCAACGGTAGATATT
ACAGGGAAAGGAGCGTAA

Upstream 100 bases:

>100_bases
AGTCAAAGCAACCTTTGTTTATAATAAAAAGCAAGACCAACAATATGTTAGGCATGAAATTTTATCATGTCATTCTTAGG
ATAGATTAAGGGGACAAGGA

Downstream 100 bases:

>100_bases
TCATGAACACGACAACTAACCGCGTTCCAACGCGTTGGGAACGATTTAAATCATCGGATTTTTTGTACTATTTCTTACGT
GACAAAGTAGCAATGTTTAG

Product: binding-protein-dependent transport system,inner membrane component

Products: ADP; phosphate; dipeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 325; Mature: 325

Protein sequence:

>325_residues
MFTFLVKRLFQALIVMFVISLVAFSIQDNLGDPLRELVGQSVSESERQALRDDLGLNDPFVTKYTRFITNAVQGDLGTSY
FFKKPAVEVILDKLVATLELVLGSALIIICLSIPLGVYSAIHPKSFFTKAIMAFSSIGISIPVFLTAIMLMYVFSIELNW
LPSYGRGETYNLLGWESGFFTIDGLAHLVLPCVSLASIMLPLFIRLVRSEMIEVLSSEYIKFAKAKGIATNKIYYQHALK
NTMLPVLTVGGVQIGTMVAYTILTETVFQWPGTGFLFLEAINRVDTPLITAYVIFVGLIFVVTNTIVDLLYGLINPTVDI
TGKGA

Sequences:

>Translated_325_residues
MFTFLVKRLFQALIVMFVISLVAFSIQDNLGDPLRELVGQSVSESERQALRDDLGLNDPFVTKYTRFITNAVQGDLGTSY
FFKKPAVEVILDKLVATLELVLGSALIIICLSIPLGVYSAIHPKSFFTKAIMAFSSIGISIPVFLTAIMLMYVFSIELNW
LPSYGRGETYNLLGWESGFFTIDGLAHLVLPCVSLASIMLPLFIRLVRSEMIEVLSSEYIKFAKAKGIATNKIYYQHALK
NTMLPVLTVGGVQIGTMVAYTILTETVFQWPGTGFLFLEAINRVDTPLITAYVIFVGLIFVVTNTIVDLLYGLINPTVDI
TGKGA
>Mature_325_residues
MFTFLVKRLFQALIVMFVISLVAFSIQDNLGDPLRELVGQSVSESERQALRDDLGLNDPFVTKYTRFITNAVQGDLGTSY
FFKKPAVEVILDKLVATLELVLGSALIIICLSIPLGVYSAIHPKSFFTKAIMAFSSIGISIPVFLTAIMLMYVFSIELNW
LPSYGRGETYNLLGWESGFFTIDGLAHLVLPCVSLASIMLPLFIRLVRSEMIEVLSSEYIKFAKAKGIATNKIYYQHALK
NTMLPVLTVGGVQIGTMVAYTILTETVFQWPGTGFLFLEAINRVDTPLITAYVIFVGLIFVVTNTIVDLLYGLINPTVDI
TGKGA

Specific function: Part of the binding-protein-dependent transport system for dipeptides; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789965, Length=336, Percent_Identity=35.4166666666667, Blast_Score=207, Evalue=8e-55,
Organism=Escherichia coli, GI1787053, Length=319, Percent_Identity=31.0344827586207, Blast_Score=194, Evalue=7e-51,
Organism=Escherichia coli, GI1789888, Length=323, Percent_Identity=30.9597523219814, Blast_Score=169, Evalue=3e-43,
Organism=Escherichia coli, GI1787761, Length=309, Percent_Identity=31.0679611650485, Blast_Score=147, Evalue=1e-36,
Organism=Escherichia coli, GI1787497, Length=322, Percent_Identity=29.8136645962733, Blast_Score=145, Evalue=4e-36,
Organism=Escherichia coli, GI1787550, Length=263, Percent_Identity=31.9391634980989, Blast_Score=125, Evalue=4e-30,
Organism=Escherichia coli, GI1788504, Length=275, Percent_Identity=28.3636363636364, Blast_Score=102, Evalue=3e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 35897; Mature: 35897

Theoretical pI: Translated: 6.27; Mature: 6.27

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFTFLVKRLFQALIVMFVISLVAFSIQDNLGDPLRELVGQSVSESERQALRDDLGLNDPF
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHCCCCCCH
VTKYTRFITNAVQGDLGTSYFFKKPAVEVILDKLVATLELVLGSALIIICLSIPLGVYSA
HHHHHHHHHHHHHCCCCCHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IHPKSFFTKAIMAFSSIGISIPVFLTAIMLMYVFSIELNWLPSYGRGETYNLLGWESGFF
CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCE
TIDGLAHLVLPCVSLASIMLPLFIRLVRSEMIEVLSSEYIKFAKAKGIATNKIYYQHALK
EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
NTMLPVLTVGGVQIGTMVAYTILTETVFQWPGTGFLFLEAINRVDTPLITAYVIFVGLIF
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHH
VVTNTIVDLLYGLINPTVDITGKGA
HHHHHHHHHHHHHHCCCEEECCCCC
>Mature Secondary Structure
MFTFLVKRLFQALIVMFVISLVAFSIQDNLGDPLRELVGQSVSESERQALRDDLGLNDPF
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHCCCCCCH
VTKYTRFITNAVQGDLGTSYFFKKPAVEVILDKLVATLELVLGSALIIICLSIPLGVYSA
HHHHHHHHHHHHHCCCCCHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IHPKSFFTKAIMAFSSIGISIPVFLTAIMLMYVFSIELNWLPSYGRGETYNLLGWESGFF
CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCE
TIDGLAHLVLPCVSLASIMLPLFIRLVRSEMIEVLSSEYIKFAKAKGIATNKIYYQHALK
EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
NTMLPVLTVGGVQIGTMVAYTILTETVFQWPGTGFLFLEAINRVDTPLITAYVIFVGLIF
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHH
VVTNTIVDLLYGLINPTVDITGKGA
HHHHHHHHHHHHHHCCCEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; dipeptides [Periplasm]; H2O [C]

Specific reaction: ATP + dipeptides [Periplasm] + H2O = ADP + phosphate + dipeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9680333 [H]