Click here to switch to the map view.

The map label for this gene is ybeY [C]

Identifier: 308535206

GI number: 308535206

Start: 1156268

End: 1156735

Strand: Direct

Name: ybeY [C]

Synonym: NA

Alternate gene names: 308535206

Gene position: 1156268-1156735 (Clockwise)

Preceding gene: 197117387

Following gene: 197117389

Centisome position: 25.05

GC content: 61.75

Gene sequence:

>468_bases
TTGTCAAGAAGTGCCCAGAGGATTGCGATAGCGAACCGCCAAAGGCGGATCCCGGTCGGGACGACGGCGTTGCGAAAGGT
GGCGCAGAGGATCTTAGACGCCTTGGGATGTCCTGAGGCCGAACTCTCCATCAGCATCGTCGGCGACCGCGCCATCAGGG
TCATCAACCGCGATTACCTGGGGCGGGACAAGGCAACCAACGTGATTTCGTTCGCCATGCAGGAAGGGGAGTTCGGTGCA
GTAAACCCGGAACTGCTGGGGGACGTGGTGATCTCGGTGGACACCGCAGCGCGCGAGGCGGAGGAGGCGGGGGAAACCTT
CCTAAGCCGCCTCTACTTCCTGCTTATGCACGGCATCCTGCACATCACCGGCTACGATCACGAAAGAAGCGGCGAGGCTG
AGGCGGCCCGCATGGAGGCGAAGGAACGCGAGATCTTCGCCCTCTTGGTCGGGGAAGGTCTTGTCTAG

Upstream 100 bases:
NA

Downstream 100 bases:
NA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 155; Mature: 154

Protein sequence:
NA

Sequences:

>Translated_155_residues
MSRSAQRIAIANRQRRIPVGTTALRKVAQRILDALGCPEAELSISIVGDRAIRVINRDYLGRDKATNVISFAMQEGEFGA
VNPELLGDVVISVDTAAREAEEAGETFLSRLYFLLMHGILHITGYDHERSGEAEAARMEAKEREIFALLVGEGLV
>Mature_154_residues
SRSAQRIAIANRQRRIPVGTTALRKVAQRILDALGCPEAELSISIVGDRAIRVINRDYLGRDKATNVISFAMQEGEFGAV
NPELLGDVVISVDTAAREAEEAGETFLSRLYFLLMHGILHITGYDHERSGEAEAARMEAKEREIFALLVGEGLV

Specific function: Involved in rRNA and/or ribosome maturation and assembly. Required for normal 5' and 3' processing of 16S, 23S and 5S rRNAs. May have metal-dependent hydrolase activity [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rRNA maturation factor YbeY family [H]

Homologues:

Organism=Escherichia coli, GI1786880, Length=93, Percent_Identity=36.5591397849462, Blast_Score=63, Evalue=7e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR023091
- InterPro:   IPR002036 [H]

Pfam domain/function: PF02130 UPF0054 [H]

EC number: NA

Molecular weight: Translated: 17024; Mature: 16893

Theoretical pI: Translated: 5.32; Mature: 5.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRSAQRIAIANRQRRIPVGTTALRKVAQRILDALGCPEAELSISIVGDRAIRVINRDYL
CCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHC
GRDKATNVISFAMQEGEFGAVNPELLGDVVISVDTAAREAEEAGETFLSRLYFLLMHGIL
CCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HITGYDHERSGEAEAARMEAKEREIFALLVGEGLV
HHCCCCCCCCCCHHHHHHHHHHHHHHEEEECCCCC
>Mature Secondary Structure 
SRSAQRIAIANRQRRIPVGTTALRKVAQRILDALGCPEAELSISIVGDRAIRVINRDYL
CCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHC
GRDKATNVISFAMQEGEFGAVNPELLGDVVISVDTAAREAEEAGETFLSRLYFLLMHGIL
CCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HITGYDHERSGEAEAARMEAKEREIFALLVGEGLV
HHCCCCCCCCCCHHHHHHHHHHHHHHEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA