Click here to switch to the map view.

The map label for this gene is ydhC [H]

Identifier: 197120156

GI number: 197120156

Start: 4333452

End: 4334141

Strand: Direct

Name: ydhC [H]

Synonym: Gbem_3795

Alternate gene names: 197120156

Gene position: 4333452-4334141 (Clockwise)

Preceding gene: 197120153

Following gene: 197120157

Centisome position: 93.9

GC content: 58.55

Gene sequence:

>690_bases
ATGAAGAAGAGCGTGGAGAAGCACCTAACCCTTAGGGAACGGATACTTGAGACTATCCGGGACGCGATCATGTCGGGTGC
TCTTAAGCCCGGAGAGAAGGTTGCAGAGCCGGAACTTGCCTCCCGCTTCGGCATCAGCCGCACCCCAATTCGCGAAGCGT
TCCGGCAGCTGGAATCGGAAGGGTACCTCTCGGTAGTACCGCGCAAGGGGGCGCTCGTCGCCTGCTTCTCCCCGAAAGAC
GTCGAAGAGTTCTACGCCATCAAGAGCATCCTCGAAGGGTATGCCGCTCGCAAGGCGTGCGCCATGCTCAGCACCCGCGA
AATCAACAAGCTGGAAGCGATCAACGAAAAGCTGAGGGAAATCGCCGAGGAAGGGGACGTGCGCCACTTCTTCAAGGTGC
ACAACAGCTTCCATGATCTTTTCATCAGGGGAGCCGGCAACGAAAAACTGCACGACATGATCGCCCAGCTCCTCAAGAAG
TTCCAGCGCCTGCGCATGGCGTCGCTCAGCAAGCCAGGCAGGATGCAGCTCTCCGTAGAGGAGCACGAAAAGATCATCGA
GGCCTTCCGCACCAGGGACGCGGTCCTGGCCGAGATGCTGGTTCAAAAAAACGCCGAGTACGGCGGCAAGGTCCTGATCG
AAGAGGAAAGCGCCACCGAGCTCTGGAACAGCAAGGGGCTCGACCTTTAA

Upstream 100 bases:

>100_bases
ATTTCAAGTGTTTTCACCTTAAAGTCTATAAATTTAAAGGGAAGTTCTTGACAATCTTTGGATACTGTATACAATACGGC
CGATCATTGAGGGGGACCGT

Downstream 100 bases:

>100_bases
AAGGCAATTGACAATGGACAATTGACGATTGACAATTGTCCATCGCTTCTTCCCCCCCTCCTCCCCATCACCCACTGTCT
CTAGTTCGGCTATCATCTTT

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 229; Mature: 229

Protein sequence:

>229_residues
MKKSVEKHLTLRERILETIRDAIMSGALKPGEKVAEPELASRFGISRTPIREAFRQLESEGYLSVVPRKGALVACFSPKD
VEEFYAIKSILEGYAARKACAMLSTREINKLEAINEKLREIAEEGDVRHFFKVHNSFHDLFIRGAGNEKLHDMIAQLLKK
FQRLRMASLSKPGRMQLSVEEHEKIIEAFRTRDAVLAEMLVQKNAEYGGKVLIEEESATELWNSKGLDL

Sequences:

>Translated_229_residues
MKKSVEKHLTLRERILETIRDAIMSGALKPGEKVAEPELASRFGISRTPIREAFRQLESEGYLSVVPRKGALVACFSPKD
VEEFYAIKSILEGYAARKACAMLSTREINKLEAINEKLREIAEEGDVRHFFKVHNSFHDLFIRGAGNEKLHDMIAQLLKK
FQRLRMASLSKPGRMQLSVEEHEKIIEAFRTRDAVLAEMLVQKNAEYGGKVLIEEESATELWNSKGLDL
>Mature_229_residues
MKKSVEKHLTLRERILETIRDAIMSGALKPGEKVAEPELASRFGISRTPIREAFRQLESEGYLSVVPRKGALVACFSPKD
VEEFYAIKSILEGYAARKACAMLSTREINKLEAINEKLREIAEEGDVRHFFKVHNSFHDLFIRGAGNEKLHDMIAQLLKK
FQRLRMASLSKPGRMQLSVEEHEKIIEAFRTRDAVLAEMLVQKNAEYGGKVLIEEESATELWNSKGLDL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787821, Length=194, Percent_Identity=27.319587628866, Blast_Score=84, Evalue=5e-18,
Organism=Escherichia coli, GI87081914, Length=211, Percent_Identity=27.0142180094787, Blast_Score=71, Evalue=5e-14,
Organism=Escherichia coli, GI87082149, Length=203, Percent_Identity=26.6009852216749, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000485
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 26044; Mature: 26044

Theoretical pI: Translated: 8.68; Mature: 8.68

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKSVEKHLTLRERILETIRDAIMSGALKPGEKVAEPELASRFGISRTPIREAFRQLESE
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCHHHHHHCCCCCCHHHHHHHHHCCC
GYLSVVPRKGALVACFSPKDVEEFYAIKSILEGYAARKACAMLSTREINKLEAINEKLRE
CCEEEECCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IAEEGDVRHFFKVHNSFHDLFIRGAGNEKLHDMIAQLLKKFQRLRMASLSKPGRMQLSVE
HHHHCCHHHHHHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECHH
EHEKIIEAFRTRDAVLAEMLVQKNAEYGGKVLIEEESATELWNSKGLDL
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHCCCCCCC
>Mature Secondary Structure
MKKSVEKHLTLRERILETIRDAIMSGALKPGEKVAEPELASRFGISRTPIREAFRQLESE
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCHHHHHHCCCCCCHHHHHHHHHCCC
GYLSVVPRKGALVACFSPKDVEEFYAIKSILEGYAARKACAMLSTREINKLEAINEKLRE
CCEEEECCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IAEEGDVRHFFKVHNSFHDLFIRGAGNEKLHDMIAQLLKKFQRLRMASLSKPGRMQLSVE
HHHHCCHHHHHHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECHH
EHEKIIEAFRTRDAVLAEMLVQKNAEYGGKVLIEEESATELWNSKGLDL
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]