| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
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The map label for this gene is selA [H]
Identifier: 197120157
GI number: 197120157
Start: 4334545
End: 4335951
Strand: Direct
Name: selA [H]
Synonym: Gbem_3796
Alternate gene names: 197120157
Gene position: 4334545-4335951 (Clockwise)
Preceding gene: 197120156
Following gene: 197120158
Centisome position: 93.92
GC content: 64.82
Gene sequence:
>1407_bases ATGCAGGAGGAGGTGCCCGTGCAGCAGCTTAAAATGATCCCGAAGGTTGATCGGGTCCTCGAGTGGGAGGCGGTGCGCAA GCTTCTGGCCACCTACCCAAGGGAGTTGGTGCTGCGAGCCGTCCGCAGCGTGCTGGATAAGCTGCGCAGCGGCGCCCGTG CCGGCGGTCTCGACGATTCGGCTTTCCTTGAACCCGCAGTCTGCGCCGCAGTGGCCCACGAACTAGCCCAGCTCTCCAGG CCGAGCCTCCAGAGGGTGATCAACGGCTCCGGCATCGTGATACACACAAACTTGGGACGCTCCATCCTCCCCGAAGCCGC CCGCAACGCCCTTAACACCATAGCCTTCTCCTATTCGAACCTTGAGTTCGACCTCGAAGCCGGGGTGCGCGGCAGCCGCT ACAGCCACGTGGAGGCTCTCCTTTGCGAACTGACCGGGGCCGAGGCCGCCATTGTGGTCAACAACAACGCCGCGGCAGTG CTTCTCTCGCTGAGTTCGATGGCCGCCGGCCGCGAGGCGGTGGTTTCGCGCGGGGAGCTGGTGGAAATCGGCGGCTCTTT CCGCATTCCCGAGGTGATGCGGCTTTCGGGCGTGACGCTGAGGGAGGTGGGGACAACGAACCGCACCCATCCCAGGGACT ACAGCAGCGCGGCAAACGAGCAGACCGCAGTGTTTCTCAAGGTGCACTGCAGCAATTTCGCCGTCCTTGGCTTCACCGCA GAGGTGACCGCCCAGGAGTTGGTAGCGCTTGGGGCCGCGGCCGGGGTCCCGGTATTGGCCGACATGGGAAGCGGCAACCT GATCGACCTCTCGGGACGCTTGCCGGTCCCGGAGCCGACGGTGCAGGAGTTCGTGCGCGCGGGGGTCGACGTCATCACCT TCAGCGGCGACAAGCTCCTGGGAGGCCCGCAGGCAGGGATCATCGTCGGGAAAAAACCGTTTATCGAGGCGATGAAGAAG CACCAGTTGCTGCGCGCGCTCAGGATGGACAAGCTCACCCTCGCGAGCCTGGAGGCGACGCTCGCCCTGTACCGGGACGA GATGGTCGCGCTCAAGGAAGTGCCGACGCTGAGGATGCTGACCGCCACCCTCCCCGAGTTGACGGCGCGGGCGAAAAAGA TCAGCGCATTTTTGCGCCGCCGCACGCCGCAGGGGATCAGCTTCAAGCTGAGCGAAGGGTTCTCCCAGGCAGGAGGCGGG ACACTGCCGCTTTTGAACCTGCCCAGCATGCTGATTGAGGTCGCCGTCGAGGGGCTCTCCCCCAACGACATCGAGTCGCG GCTCAGGAAATCGGAGATCCCGGTCATCGGCAGGATCAACAAGAACGCCTTCCTGCTCGACCCCCGCACCCTGCTGGACA GCGACCTTTCGGATCTGGCCGCGGCCATCTCCGCCCTGGCAGGCTAG
Upstream 100 bases:
>100_bases GTCAATCGTCAATTGTCAATCGTCAATTCGCCTCTCCGCTTCTGCCTGTTTTCCTTTGCCTCCGGCGCGACTTTAAGCTA AATTAGGCCTTTGCCATTCG
Downstream 100 bases:
>100_bases ACGCTGATTTAAAGGGAACTCTTCTGTTTTTTCTGGTTCCTAAGCTCCAGCTTGGGAACCCAATGCGGCAAAAGCTCCAG CTTCGCATCAAGGGGACTGG
Product: selenocysteine synthase
Products: NA
Alternate protein names: Selenocysteine synthase; Sec synthase; Selenocysteinyl-tRNA(Sec) synthase [H]
Number of amino acids: Translated: 468; Mature: 468
Protein sequence:
>468_residues MQEEVPVQQLKMIPKVDRVLEWEAVRKLLATYPRELVLRAVRSVLDKLRSGARAGGLDDSAFLEPAVCAAVAHELAQLSR PSLQRVINGSGIVIHTNLGRSILPEAARNALNTIAFSYSNLEFDLEAGVRGSRYSHVEALLCELTGAEAAIVVNNNAAAV LLSLSSMAAGREAVVSRGELVEIGGSFRIPEVMRLSGVTLREVGTTNRTHPRDYSSAANEQTAVFLKVHCSNFAVLGFTA EVTAQELVALGAAAGVPVLADMGSGNLIDLSGRLPVPEPTVQEFVRAGVDVITFSGDKLLGGPQAGIIVGKKPFIEAMKK HQLLRALRMDKLTLASLEATLALYRDEMVALKEVPTLRMLTATLPELTARAKKISAFLRRRTPQGISFKLSEGFSQAGGG TLPLLNLPSMLIEVAVEGLSPNDIESRLRKSEIPVIGRINKNAFLLDPRTLLDSDLSDLAAAISALAG
Sequences:
>Translated_468_residues MQEEVPVQQLKMIPKVDRVLEWEAVRKLLATYPRELVLRAVRSVLDKLRSGARAGGLDDSAFLEPAVCAAVAHELAQLSR PSLQRVINGSGIVIHTNLGRSILPEAARNALNTIAFSYSNLEFDLEAGVRGSRYSHVEALLCELTGAEAAIVVNNNAAAV LLSLSSMAAGREAVVSRGELVEIGGSFRIPEVMRLSGVTLREVGTTNRTHPRDYSSAANEQTAVFLKVHCSNFAVLGFTA EVTAQELVALGAAAGVPVLADMGSGNLIDLSGRLPVPEPTVQEFVRAGVDVITFSGDKLLGGPQAGIIVGKKPFIEAMKK HQLLRALRMDKLTLASLEATLALYRDEMVALKEVPTLRMLTATLPELTARAKKISAFLRRRTPQGISFKLSEGFSQAGGG TLPLLNLPSMLIEVAVEGLSPNDIESRLRKSEIPVIGRINKNAFLLDPRTLLDSDLSDLAAAISALAG >Mature_468_residues MQEEVPVQQLKMIPKVDRVLEWEAVRKLLATYPRELVLRAVRSVLDKLRSGARAGGLDDSAFLEPAVCAAVAHELAQLSR PSLQRVINGSGIVIHTNLGRSILPEAARNALNTIAFSYSNLEFDLEAGVRGSRYSHVEALLCELTGAEAAIVVNNNAAAV LLSLSSMAAGREAVVSRGELVEIGGSFRIPEVMRLSGVTLREVGTTNRTHPRDYSSAANEQTAVFLKVHCSNFAVLGFTA EVTAQELVALGAAAGVPVLADMGSGNLIDLSGRLPVPEPTVQEFVRAGVDVITFSGDKLLGGPQAGIIVGKKPFIEAMKK HQLLRALRMDKLTLASLEATLALYRDEMVALKEVPTLRMLTATLPELTARAKKISAFLRRRTPQGISFKLSEGFSQAGGG TLPLLNLPSMLIEVAVEGLSPNDIESRLRKSEIPVIGRINKNAFLLDPRTLLDSDLSDLAAAISALAG
Specific function: Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis [H]
COG id: COG1921
COG function: function code E; Selenocysteine synthase [seryl-tRNASer selenium transferase]
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the selA family [H]
Homologues:
Organism=Escherichia coli, GI2367248, Length=448, Percent_Identity=46.4285714285714, Blast_Score=330, Evalue=1e-91,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR015424 - InterPro: IPR015421 - InterPro: IPR018319 - InterPro: IPR004534 [H]
Pfam domain/function: PF03841 SelA [H]
EC number: =2.9.1.1 [H]
Molecular weight: Translated: 50075; Mature: 50075
Theoretical pI: Translated: 8.09; Mature: 8.09
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQEEVPVQQLKMIPKVDRVLEWEAVRKLLATYPRELVLRAVRSVLDKLRSGARAGGLDDS CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCH AFLEPAVCAAVAHELAQLSRPSLQRVINGSGIVIHTNLGRSILPEAARNALNTIAFSYSN HHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHEEECC LEFDLEAGVRGSRYSHVEALLCELTGAEAAIVVNNNAAAVLLSLSSMAAGREAVVSRGEL CEEEECCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCEEEEEEHHHHHCCHHHHHCCCCE VEIGGSFRIPEVMRLSGVTLREVGTTNRTHPRDYSSAANEQTAVFLKVHCSNFAVLGFTA EEECCCCCCCHHHHHCCCCHHHCCCCCCCCCCCHHHCCCCCEEEEEEEECCCEEEEEEEH EVTAQELVALGAAAGVPVLADMGSGNLIDLSGRLPVPEPTVQEFVRAGVDVITFSGDKLL HHHHHHHHHHHHHCCCCEEEECCCCCEEEECCCCCCCCHHHHHHHHCCCEEEEECCCEEC GGPQAGIIVGKKPFIEAMKKHQLLRALRMDKLTLASLEATLALYRDEMVALKEVPTLRML CCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH TATLPELTARAKKISAFLRRRTPQGISFKLSEGFSQAGGGTLPLLNLPSMLIEVAVEGLS HHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHCCCCCCCHHHHHHHHHHHHHCCCC PNDIESRLRKSEIPVIGRINKNAFLLDPRTLLDSDLSDLAAAISALAG CHHHHHHHHHHCCCEEEEECCCEEEECCHHHHHCCHHHHHHHHHHHCC >Mature Secondary Structure MQEEVPVQQLKMIPKVDRVLEWEAVRKLLATYPRELVLRAVRSVLDKLRSGARAGGLDDS CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCH AFLEPAVCAAVAHELAQLSRPSLQRVINGSGIVIHTNLGRSILPEAARNALNTIAFSYSN HHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHEEECC LEFDLEAGVRGSRYSHVEALLCELTGAEAAIVVNNNAAAVLLSLSSMAAGREAVVSRGEL CEEEECCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCEEEEEEHHHHHCCHHHHHCCCCE VEIGGSFRIPEVMRLSGVTLREVGTTNRTHPRDYSSAANEQTAVFLKVHCSNFAVLGFTA EEECCCCCCCHHHHHCCCCHHHCCCCCCCCCCCHHHCCCCCEEEEEEEECCCEEEEEEEH EVTAQELVALGAAAGVPVLADMGSGNLIDLSGRLPVPEPTVQEFVRAGVDVITFSGDKLL HHHHHHHHHHHHHCCCCEEEECCCCCEEEECCCCCCCCHHHHHHHHCCCEEEEECCCEEC GGPQAGIIVGKKPFIEAMKKHQLLRALRMDKLTLASLEATLALYRDEMVALKEVPTLRML CCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH TATLPELTARAKKISAFLRRRTPQGISFKLSEGFSQAGGGTLPLLNLPSMLIEVAVEGLS HHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHCCCCCCCHHHHHHHHHHHHHCCCC PNDIESRLRKSEIPVIGRINKNAFLLDPRTLLDSDLSDLAAAISALAG CHHHHHHHHHHCCCEEEEECCCEEEECCHHHHHCCHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA