| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
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The map label for this gene is 197120098
Identifier: 197120098
GI number: 197120098
Start: 4263357
End: 4264406
Strand: Direct
Name: 197120098
Synonym: Gbem_3737
Alternate gene names: NA
Gene position: 4263357-4264406 (Clockwise)
Preceding gene: 197120097
Following gene: 197120099
Centisome position: 92.38
GC content: 60.0
Gene sequence:
>1050_bases ATGCAGCTTGATGACATCCTCCTGAAGAACGCGCCCCTGAAAAACCTGCACGCCGGCAAAAGGTGCTTCATCGTTGGGAA CGGGCCTTCTATTAAATCCCAGGACCTCACCCTTCTGAAGGACGAGGTGACCATCGTGGTGTCGTCCTTTTTCCGGCACC CCGACGCGAAGCTCATCGATCCCGCCTACTGGGTCATCGCCGATCCAGGCTTCTGGATGAGGCCGGAAGAGACCTTCTAC CCCGCCCTGCAGTTCGCGCAGGACAAGTGCGTAAGCCCGAAGCTCTTTTTCCCCTCCGGCGCCTTCCCGTTTCTGTGCCA GACCAACCCGGGGCCGCTTATTGACCTGCACTTCTACCACTACGACGAAACCCGGAGCATCGAGGCGCCCCTCGATTTTT CCACCGGCATCCTCCCCTTCGGCCAGAACGTGGTGATCGTCAGCCTGATGCTCGCATTCCACCTCGGGTGCAACCCGATC TACTTCGTCGGGTGCGACCACGACTTCATGCGGGTCACAGAGGCAGAGTACGAGAACCAGCGGGTGGAGCACTTCTATCC CGAGTCGAAAAAATGCGTCGACTATCTGACCTGGAACCAGTGGCGGGGAGCCATGGCAATGATGGACTACCAGTACCAGC AGCTCAACAACTATGCCCGGATCTGGGGCTTCAACGTCTTCAACGCGACGGCAGGCGGATGTCTCGACCATTACCCGCGG GTCAACTACGAGTCCCTCTTCCTCAGTGACACGCCCAGTGCGCCCGCTTGCGACCCCCGGGAACCGTTCCGGCTCATTCA GGCGGCCCAAGCGCTTATGAAGGCCGAGGATTACAAGACAGCCCTGGACCTGCTCGACCAGGCCATGGCCCGGAACTTGA ACCGCTTGGAGCGGGTGGAAGGGCTTTACTACCACAAGGCGATCTGCCTGACGAGCCTCGGCAGAGTCCATGAGGCGCTC ATCTGGGCTCGCCAGGACCTCCTTTGCAACCCAGGGAACGAGGCGAACGCGCAACCCCTTATACGAAGACTCGAGGGCTT CCTCAGCTGA
Upstream 100 bases:
>100_bases GAAACACCCCCTTTGCTGTCTTTAAAAGTCGAGTTCGAGATCGACCGTTTTTTGCAATTCATCCGAGACGTCGTTACAAA CGCAAAGGGAAAGAGCCACT
Downstream 100 bases:
>100_bases CAAAGGAACTTGCCTCACGCCTAAAGGAGACGGTATGGACGCAGCAGCCTCACACGGAACCACGGTTCACCAATATATGG AGTATTTCGTGCGGCAAGAC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 349; Mature: 349
Protein sequence:
>349_residues MQLDDILLKNAPLKNLHAGKRCFIVGNGPSIKSQDLTLLKDEVTIVVSSFFRHPDAKLIDPAYWVIADPGFWMRPEETFY PALQFAQDKCVSPKLFFPSGAFPFLCQTNPGPLIDLHFYHYDETRSIEAPLDFSTGILPFGQNVVIVSLMLAFHLGCNPI YFVGCDHDFMRVTEAEYENQRVEHFYPESKKCVDYLTWNQWRGAMAMMDYQYQQLNNYARIWGFNVFNATAGGCLDHYPR VNYESLFLSDTPSAPACDPREPFRLIQAAQALMKAEDYKTALDLLDQAMARNLNRLERVEGLYYHKAICLTSLGRVHEAL IWARQDLLCNPGNEANAQPLIRRLEGFLS
Sequences:
>Translated_349_residues MQLDDILLKNAPLKNLHAGKRCFIVGNGPSIKSQDLTLLKDEVTIVVSSFFRHPDAKLIDPAYWVIADPGFWMRPEETFY PALQFAQDKCVSPKLFFPSGAFPFLCQTNPGPLIDLHFYHYDETRSIEAPLDFSTGILPFGQNVVIVSLMLAFHLGCNPI YFVGCDHDFMRVTEAEYENQRVEHFYPESKKCVDYLTWNQWRGAMAMMDYQYQQLNNYARIWGFNVFNATAGGCLDHYPR VNYESLFLSDTPSAPACDPREPFRLIQAAQALMKAEDYKTALDLLDQAMARNLNRLERVEGLYYHKAICLTSLGRVHEAL IWARQDLLCNPGNEANAQPLIRRLEGFLS >Mature_349_residues MQLDDILLKNAPLKNLHAGKRCFIVGNGPSIKSQDLTLLKDEVTIVVSSFFRHPDAKLIDPAYWVIADPGFWMRPEETFY PALQFAQDKCVSPKLFFPSGAFPFLCQTNPGPLIDLHFYHYDETRSIEAPLDFSTGILPFGQNVVIVSLMLAFHLGCNPI YFVGCDHDFMRVTEAEYENQRVEHFYPESKKCVDYLTWNQWRGAMAMMDYQYQQLNNYARIWGFNVFNATAGGCLDHYPR VNYESLFLSDTPSAPACDPREPFRLIQAAQALMKAEDYKTALDLLDQAMARNLNRLERVEGLYYHKAICLTSLGRVHEAL IWARQDLLCNPGNEANAQPLIRRLEGFLS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 39940; Mature: 39940
Theoretical pI: Translated: 5.79; Mature: 5.79
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.9 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 5.4 %Cys+Met (Translated Protein) 2.9 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 5.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQLDDILLKNAPLKNLHAGKRCFIVGNGPSIKSQDLTLLKDEVTIVVSSFFRHPDAKLID CCCHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCCCEEHHHHHHHHHHHHHCCCCCCEEC PAYWVIADPGFWMRPEETFYPALQFAQDKCVSPKLFFPSGAFPFLCQTNPGPLIDLHFYH CEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCEEEECCCCCEEEEEEEE YDETRSIEAPLDFSTGILPFGQNVVIVSLMLAFHLGCNPIYFVGCDHDFMRVTEAEYENQ ECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHCC RVEHFYPESKKCVDYLTWNQWRGAMAMMDYQYQQLNNYARIWGFNVFNATAGGCLDHYPR HHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHCCEEHHEEEEECCCCCCCHHHCCCC VNYESLFLSDTPSAPACDPREPFRLIQAAQALMKAEDYKTALDLLDQAMARNLNRLERVE CCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GLYYHKAICLTSLGRVHEALIWARQDLLCNPGNEANAQPLIRRLEGFLS HHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCHHHHHHHHHHHCC >Mature Secondary Structure MQLDDILLKNAPLKNLHAGKRCFIVGNGPSIKSQDLTLLKDEVTIVVSSFFRHPDAKLID CCCHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCCCEEHHHHHHHHHHHHHCCCCCCEEC PAYWVIADPGFWMRPEETFYPALQFAQDKCVSPKLFFPSGAFPFLCQTNPGPLIDLHFYH CEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCEEEECCCCCEEEEEEEE YDETRSIEAPLDFSTGILPFGQNVVIVSLMLAFHLGCNPIYFVGCDHDFMRVTEAEYENQ ECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHCC RVEHFYPESKKCVDYLTWNQWRGAMAMMDYQYQQLNNYARIWGFNVFNATAGGCLDHYPR HHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHCCEEHHEEEEECCCCCCCHHHCCCC VNYESLFLSDTPSAPACDPREPFRLIQAAQALMKAEDYKTALDLLDQAMARNLNRLERVE CCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GLYYHKAICLTSLGRVHEALIWARQDLLCNPGNEANAQPLIRRLEGFLS HHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA