| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
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The map label for this gene is 197119433
Identifier: 197119433
GI number: 197119433
Start: 3549096
End: 3549833
Strand: Direct
Name: 197119433
Synonym: Gbem_3062
Alternate gene names: NA
Gene position: 3549096-3549833 (Clockwise)
Preceding gene: 197119431
Following gene: 197119436
Centisome position: 76.9
GC content: 56.5
Gene sequence:
>738_bases ATGTGTGAGCAAAAAACGGTATTCATTGCAGGCGCAAGTGGAGCAATCGGGAGACAACTGTCTAAAATTTTGGTTAATGA CGGATGGCGGGTTGTAGGAACTACCAGAACCGCCGGTAAAACGGCCATGATGAAAGAACTAGGTGTTGAACCCGTCATTG TGGACGTGTTCGATGAAAATAAGCTGGCACAGGCGGTGCGTGAGGCCCAACCTGAGGTCGTTATCCATCAACTCACCGAC CTGCCGTATGGACTCGATCCCGAGCTAATGGAAGCAGCTTTGGTCCGCAATGCAATCCTGAGAGAGGTCGGCACCCGAAA CCTGGTTGCAGCCGCCTGCGCTGCTGGAGCAAAACGCCTGATCGCCCAAAGCATTGCCTTTGTATTCGAGCCTGGCCCGA CCCCGTTCACAGAAGAGTCTCCTCTGCTGAACTTTGAGGATCCTGGCTACGGCCCGACGTCCAGGGCGGTGGCAAACCTC GAACAGCAAGTCATGGACGCGCCGCTCGACGGGTTGGTATTGCGTTACGGGCTTATCTACGGGCCAGGAACCGGATTCGA CAGCCCGCTGACCGAGATCGCGGCAACAGTGCATGTCGACGCTGCAGCCCACGCGGCACGCCTTGCTATAACCAATGGAA CCCGCGGCATCTACAACGTCACCGACCCGGACGAGAGGGTCTCAAGTAGGAAAGCGGAAGAAACCTTTGGGTGGACTGCT GACTTTCGGGCCTCGTAG
Upstream 100 bases:
>100_bases TGAGAAACGGGTTTGGCACGGGAGTGGCTCTAGGGTTTTTCAAGAGGCCAAGAACGTCCGTGTGACGTTTGGTCAAACAC CACAACAAGGAGAATAGGTA
Downstream 100 bases:
>100_bases CGCAGCTGCTACAATTAGTCCCCTACCAGTAAAACATCCAACGAAGTGTCTGAAACAAAGGCCCCTTGGCATACACCAAG GGGCCTTTGGAAATTATGAT
Product: hypothetical protein
Products: NA
Alternate protein names: DTDP-Glucose 4 6-Dehydratase; Dehydrogenase; Steroid Protein ; Epimerase/Dehydratase; NAD Dependent Epimerase/Dehydratase Family; Nucleoside-Diphosphate-Sugar Epimerase; Glucose Epimerase Protein; Carbon-Nitrogen Family Hydrolase
Number of amino acids: Translated: 245; Mature: 245
Protein sequence:
>245_residues MCEQKTVFIAGASGAIGRQLSKILVNDGWRVVGTTRTAGKTAMMKELGVEPVIVDVFDENKLAQAVREAQPEVVIHQLTD LPYGLDPELMEAALVRNAILREVGTRNLVAAACAAGAKRLIAQSIAFVFEPGPTPFTEESPLLNFEDPGYGPTSRAVANL EQQVMDAPLDGLVLRYGLIYGPGTGFDSPLTEIAATVHVDAAAHAARLAITNGTRGIYNVTDPDERVSSRKAEETFGWTA DFRAS
Sequences:
>Translated_245_residues MCEQKTVFIAGASGAIGRQLSKILVNDGWRVVGTTRTAGKTAMMKELGVEPVIVDVFDENKLAQAVREAQPEVVIHQLTD LPYGLDPELMEAALVRNAILREVGTRNLVAAACAAGAKRLIAQSIAFVFEPGPTPFTEESPLLNFEDPGYGPTSRAVANL EQQVMDAPLDGLVLRYGLIYGPGTGFDSPLTEIAATVHVDAAAHAARLAITNGTRGIYNVTDPDERVSSRKAEETFGWTA DFRAS >Mature_245_residues MCEQKTVFIAGASGAIGRQLSKILVNDGWRVVGTTRTAGKTAMMKELGVEPVIVDVFDENKLAQAVREAQPEVVIHQLTD LPYGLDPELMEAALVRNAILREVGTRNLVAAACAAGAKRLIAQSIAFVFEPGPTPFTEESPLLNFEDPGYGPTSRAVANL EQQVMDAPLDGLVLRYGLIYGPGTGFDSPLTEIAATVHVDAAAHAARLAITNGTRGIYNVTDPDERVSSRKAEETFGWTA DFRAS
Specific function: Unknown
COG id: COG0451
COG function: function code MG; Nucleoside-diphosphate-sugar epimerases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 26225; Mature: 26225
Theoretical pI: Translated: 4.65; Mature: 4.65
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MCEQKTVFIAGASGAIGRQLSKILVNDGWRVVGTTRTAGKTAMMKELGVEPVIVDVFDEN CCCCCEEEEEECCCHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHCCCEEEEEECCCH KLAQAVREAQPEVVIHQLTDLPYGLDPELMEAALVRNAILREVGTRNLVAAACAAGAKRL HHHHHHHHCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH IAQSIAFVFEPGPTPFTEESPLLNFEDPGYGPTSRAVANLEQQVMDAPLDGLVLRYGLIY HHHHHHHEECCCCCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHCEE GPGTGFDSPLTEIAATVHVDAAAHAARLAITNGTRGIYNVTDPDERVSSRKAEETFGWTA CCCCCCCCHHHHHHHHHHHHHHHHHEEEEEECCCCCEEECCCHHHHHHHHHHHHHCCCCC DFRAS CCCCC >Mature Secondary Structure MCEQKTVFIAGASGAIGRQLSKILVNDGWRVVGTTRTAGKTAMMKELGVEPVIVDVFDEN CCCCCEEEEEECCCHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHCCCEEEEEECCCH KLAQAVREAQPEVVIHQLTDLPYGLDPELMEAALVRNAILREVGTRNLVAAACAAGAKRL HHHHHHHHCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH IAQSIAFVFEPGPTPFTEESPLLNFEDPGYGPTSRAVANLEQQVMDAPLDGLVLRYGLIY HHHHHHHEECCCCCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHCEE GPGTGFDSPLTEIAATVHVDAAAHAARLAITNGTRGIYNVTDPDERVSSRKAEETFGWTA CCCCCCCCHHHHHHHHHHHHHHHHHEEEEEECCCCCEEECCCHHHHHHHHHHHHHCCCCC DFRAS CCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA