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The map label for this gene is ydeL [H]

Identifier: 197119431

GI number: 197119431

Start: 3546585

End: 3547979

Strand: Direct

Name: ydeL [H]

Synonym: Gbem_3060

Alternate gene names: 197119431

Gene position: 3546585-3547979 (Clockwise)

Preceding gene: 308535342

Following gene: 197119433

Centisome position: 76.85

GC content: 55.7

Gene sequence:

>1395_bases
ATGTTCATCCTGAGTAGTAGCGATACTGTTCCATTGTACAAGCAGCTCTACAACCAGATCAGGGACCTCATACTGTCAGG
CAAACTACCTGCCGATTCCAAGCTTCCGTCGGTGAGGCATCTGGCCAACGAACTCTCTGCCAGTTGCAACACGGTGGACG
GCGCCTATCAGGAGCTTTATGCAGAGGGGTACATTTACAGCAGGCCGCGCAGCGGGTATTTCGTGTCGGCACTGGACCAG
GAGATGGCACCACACGCTACTACCTCGGCAAAGTTGGGCCGAAACGACTTCCTGCCGCCTCCCCCAGCCCGCTTTGCCTA
TAATTTCCACCCTGCCCGCCTCGATCAGGAGAGCTTCCCCGCGGCTCTCTGGCGTAAATGTCTGATCGAAGGTCTGCGCG
GCAACAGTAAAGAGCTGAGCCACTATGGCGACCTCCAGGGCGATTGGCGATTGCGCTGCTCCATTCAAAGTTACCTGGAA
AAATCACGTGGCGTCATGTGCGATCCCGAGCAGATTGTGGTCTCTTCTGGGCTCCACCAAGGCCTCGAAATCGTCGCGCA
ACTGCTAAAAGACGACCACTCAGTGGTAGGGGTCGAGGACCCTGGCTATCACCTTCCTCGTGCTGTCTTTGAAAACCATG
CCTATACCATTAGACCTGTCCCCGTCGGACAAAGTGGAATCGAGCTCAACCAACTCAAGGCTGGTGACGCGACTATCGTC
TACGTCACTCCGTCCCATCAGCTGCCACTGGGTTATGTGATGCCGGTGGCCAATCGGCTGGCATTGCTAGAGTGGGCCGA
ATCCGGTGGCAATTTCATTATCGAAGACGACTACGACAGCGAGCTTCGCTACCAAGGTAACCCGATCCCCTCCTTGCAGG
GGATTCGTCCAACTGGAAACATCATCTACTCTGGAACCTTCTCCAAGATCCTCTCCCCGGCACTCCGCCTGAGCTATCTG
GTTCTCCCTTACTCTTTACTGGGTGCCTACCGCCAGCGATACGGAAGCTACAACTGTTCAGTGTCACTCGTTGAGCAACG
AGCCATGGCGTGTTTCATGGAGCAGGGGCATTGGGAGCGACATATCCGGCGGATGCGCACGGTCTACAAAAAGAAGCACG
ACATCCTGCTGCGGTGCGTGGAAGCCTCGTTTGGCAAACGGGCTGTGGTAATCGGTCAGGGTGCCGGCCTGCATGTTGTC
ATAAGGTTGCACGTGACGCCGCTCAGCGAAGCTGAGATCATTGCTAAGGGCCGGCAAAAGGGGATCGGGCTGGTCCGGTT
TTCCGATTTCCACGCCACCGGCAATTGCGAAAACGTGACGCTGATGCTCGGTTTCGGTGGACTTACCGGTAATGAAATTG
AGCAAGGCATTACCTTACTCTCCCAGATCTGTTGA

Upstream 100 bases:

>100_bases
CAAATTTAGTACTATGTGAACGTGTAAGGGAGGATGGAGCGTTGGGCTGCGCATCTAGCTTCGAAAAAACAAAACCACGC
GGGGGCGAGCGGGGGGCTCC

Downstream 100 bases:

>100_bases
GGTTTTGTAGGAGGCATCAATCGGTACCATCGGCATTTTAGGCCCCACCTTCAATCTGTAAAGCTCTATATTCCATAGGG
GAGGACTGACCTTTGGACGT

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 464; Mature: 464

Protein sequence:

>464_residues
MFILSSSDTVPLYKQLYNQIRDLILSGKLPADSKLPSVRHLANELSASCNTVDGAYQELYAEGYIYSRPRSGYFVSALDQ
EMAPHATTSAKLGRNDFLPPPPARFAYNFHPARLDQESFPAALWRKCLIEGLRGNSKELSHYGDLQGDWRLRCSIQSYLE
KSRGVMCDPEQIVVSSGLHQGLEIVAQLLKDDHSVVGVEDPGYHLPRAVFENHAYTIRPVPVGQSGIELNQLKAGDATIV
YVTPSHQLPLGYVMPVANRLALLEWAESGGNFIIEDDYDSELRYQGNPIPSLQGIRPTGNIIYSGTFSKILSPALRLSYL
VLPYSLLGAYRQRYGSYNCSVSLVEQRAMACFMEQGHWERHIRRMRTVYKKKHDILLRCVEASFGKRAVVIGQGAGLHVV
IRLHVTPLSEAEIIAKGRQKGIGLVRFSDFHATGNCENVTLMLGFGGLTGNEIEQGITLLSQIC

Sequences:

>Translated_464_residues
MFILSSSDTVPLYKQLYNQIRDLILSGKLPADSKLPSVRHLANELSASCNTVDGAYQELYAEGYIYSRPRSGYFVSALDQ
EMAPHATTSAKLGRNDFLPPPPARFAYNFHPARLDQESFPAALWRKCLIEGLRGNSKELSHYGDLQGDWRLRCSIQSYLE
KSRGVMCDPEQIVVSSGLHQGLEIVAQLLKDDHSVVGVEDPGYHLPRAVFENHAYTIRPVPVGQSGIELNQLKAGDATIV
YVTPSHQLPLGYVMPVANRLALLEWAESGGNFIIEDDYDSELRYQGNPIPSLQGIRPTGNIIYSGTFSKILSPALRLSYL
VLPYSLLGAYRQRYGSYNCSVSLVEQRAMACFMEQGHWERHIRRMRTVYKKKHDILLRCVEASFGKRAVVIGQGAGLHVV
IRLHVTPLSEAEIIAKGRQKGIGLVRFSDFHATGNCENVTLMLGFGGLTGNEIEQGITLLSQIC
>Mature_464_residues
MFILSSSDTVPLYKQLYNQIRDLILSGKLPADSKLPSVRHLANELSASCNTVDGAYQELYAEGYIYSRPRSGYFVSALDQ
EMAPHATTSAKLGRNDFLPPPPARFAYNFHPARLDQESFPAALWRKCLIEGLRGNSKELSHYGDLQGDWRLRCSIQSYLE
KSRGVMCDPEQIVVSSGLHQGLEIVAQLLKDDHSVVGVEDPGYHLPRAVFENHAYTIRPVPVGQSGIELNQLKAGDATIV
YVTPSHQLPLGYVMPVANRLALLEWAESGGNFIIEDDYDSELRYQGNPIPSLQGIRPTGNIIYSGTFSKILSPALRLSYL
VLPYSLLGAYRQRYGSYNCSVSLVEQRAMACFMEQGHWERHIRRMRTVYKKKHDILLRCVEASFGKRAVVIGQGAGLHVV
IRLHVTPLSEAEIIAKGRQKGIGLVRFSDFHATGNCENVTLMLGFGGLTGNEIEQGITLLSQIC

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790797, Length=449, Percent_Identity=25.6124721603563, Blast_Score=108, Evalue=1e-24,
Organism=Escherichia coli, GI1787710, Length=373, Percent_Identity=26.0053619302949, Blast_Score=89, Evalue=8e-19,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 51600; Mature: 51600

Theoretical pI: Translated: 7.79; Mature: 7.79

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFILSSSDTVPLYKQLYNQIRDLILSGKLPADSKLPSVRHLANELSASCNTVDGAYQELY
CEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHH
AEGYIYSRPRSGYFVSALDQEMAPHATTSAKLGRNDFLPPPPARFAYNFHPARLDQESFP
HCCEEEECCCCCCCHHHHHHHHCCCCCCHHCCCCCCCCCCCCCCCEECCCCCCCCHHCCC
AALWRKCLIEGLRGNSKELSHYGDLQGDWRLRCSIQSYLEKSRGVMCDPEQIVVSSGLHQ
HHHHHHHHHHHCCCCCHHHHHCCCCCCCEEEEEEHHHHHHHHCCCCCCHHHHHHHHHHHH
GLEIVAQLLKDDHSVVGVEDPGYHLPRAVFENHAYTIRPVPVGQSGIELNQLKAGDATIV
HHHHHHHHHHCCCCEEECCCCCCCCCHHHHCCCCEEEEECCCCCCCCEEEEECCCCEEEE
YVTPSHQLPLGYVMPVANRLALLEWAESGGNFIIEDDYDSELRYQGNPIPSLQGIRPTGN
EECCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCC
IIYSGTFSKILSPALRLSYLVLPYSLLGAYRQRYGSYNCSVSLVEQRAMACFMEQGHWER
EEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHH
HIRRMRTVYKKKHDILLRCVEASFGKRAVVIGQGAGLHVVIRLHVTPLSEAEIIAKGRQK
HHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEEEEEEECCCCCHHHHHHHHHC
GIGLVRFSDFHATGNCENVTLMLGFGGLTGNEIEQGITLLSQIC
CCEEEEEECCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHCC
>Mature Secondary Structure
MFILSSSDTVPLYKQLYNQIRDLILSGKLPADSKLPSVRHLANELSASCNTVDGAYQELY
CEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHH
AEGYIYSRPRSGYFVSALDQEMAPHATTSAKLGRNDFLPPPPARFAYNFHPARLDQESFP
HCCEEEECCCCCCCHHHHHHHHCCCCCCHHCCCCCCCCCCCCCCCEECCCCCCCCHHCCC
AALWRKCLIEGLRGNSKELSHYGDLQGDWRLRCSIQSYLEKSRGVMCDPEQIVVSSGLHQ
HHHHHHHHHHHCCCCCHHHHHCCCCCCCEEEEEEHHHHHHHHCCCCCCHHHHHHHHHHHH
GLEIVAQLLKDDHSVVGVEDPGYHLPRAVFENHAYTIRPVPVGQSGIELNQLKAGDATIV
HHHHHHHHHHCCCCEEECCCCCCCCCHHHHCCCCEEEEECCCCCCCCEEEEECCCCEEEE
YVTPSHQLPLGYVMPVANRLALLEWAESGGNFIIEDDYDSELRYQGNPIPSLQGIRPTGN
EECCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCC
IIYSGTFSKILSPALRLSYLVLPYSLLGAYRQRYGSYNCSVSLVEQRAMACFMEQGHWER
EEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHH
HIRRMRTVYKKKHDILLRCVEASFGKRAVVIGQGAGLHVVIRLHVTPLSEAEIIAKGRQK
HHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEEEEEEECCCCCHHHHHHHHHC
GIGLVRFSDFHATGNCENVTLMLGFGGLTGNEIEQGITLLSQIC
CCEEEEEECCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]