| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
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The map label for this gene is icd [H]
Identifier: 197119273
GI number: 197119273
Start: 3345414
End: 3347645
Strand: Reverse
Name: icd [H]
Synonym: Gbem_2901
Alternate gene names: 197119273
Gene position: 3347645-3345414 (Counterclockwise)
Preceding gene: 197119274
Following gene: 197119272
Centisome position: 72.54
GC content: 61.65
Gene sequence:
>2232_bases ATGACAACAGAAAAAGCAAAGATCGTTTGGACCAAGATCGACGAGGCCCCCGCACTGGCAACCTACTCCCTGCTCCCCAT CGTCAACGCCTTCACCAAGGCCGCCGGCGTTGTCGTTGAAACCAGGGACATCTCCCTGGCAGGCAGGATCATTGCCAACT TCCCGGACTACCTGACCGAGAGCCAGAAGATCCCGGACGAGCTGGCGTACCTGGGCGAACTGACCCAGAAGCCGGAAGCG AACATCATCAAGCTTCCGAACGTCTCCGCCTCGATCCCGCAGCTGAAAGCAGCCATCGCCGAGCTCCAGAGCCAGGGTTA CAAGCTCCCGGAATACCCGGAAGAGCCGAAGACCGACGAGGAGAAGGCGCTCAACGCACGCTACGCCAAGGTGCTCGGCT CCGCCGTCAACCCGGTCCTCAGGGAAGGCAACTCCGACCGCCGCGTCGCCAAGGCAGTCAAGGAATACGCCAAGAAGCAC CCGCACAAGATGGGCGCCTGGTCCTCCGACTCCAAAAGCCACGTCTCCAACATGAGCGCCGGCGACTTCTACCACAGCGA GAAGTCGGTGACCCTGAAAGACGCCACCGTCGCCCGCATCGAGTTCGTCGACAACTTCGGCAACGTCACCGTGATGAAGG AAAAGCTCCCGCTGCAGGCAGGCGAGGTGCTGGACGGCTCCTTCATGAACGTGCGCGCCCTGAGGAAGTTCATCCAGGAG CAGATCGACGACGCTAAAGCCAAGGGCGTGCTCTTCTCCGTGCACCTCAAGGCCACCATGATGAAGATCTCCGACCCGGT CATCTTCGGCCACTTCGTCTCCGTCTATTTCAAGGACGTCTTCGAGAAGCACGCAGCTACCTTCAAGGAAATCGGCGTCA ACGCCGACCTGGGCCTTGGCGACCTCTACAAGAAACTCGAGAAGGTTCCGGCAGGGAAGAAGGCCGAGATCGAGGCCGAC ATCAAGGCCACCTACGCGAAGCAGCCGCCGCTGGCGATGGTCGACTCCGACAAAGGGATCACCAACCTGCACGCGTCCAA CGACATCATCATCGACGCCTCCATGCCGGTCGTTATCCGCGACTCCGGCAAGATGTGGGCTCCGGACGGCAAACTCGCCG ACACCAAGTGCGTGATTCCGGATACCTGCTACTCCGAGTGGTACCAGGAGTGCATCCAGTTCTGCAAGGAAAACGGCCAG TTCGACCCGACCACCATGGGCGCCACCTCCAACGTCGGCCTCATGGCTCAGAAGGCTGAAGAGTACGGCTCACACGACAA GACCTTCAAGGCTCCGCTGAACGGCACCATGCGCGTAGTCGATGCTTCCGGCGAAGTGCTGATCCAGCACCAGGTCGAAG AGGGGGACATCTGGCGCGGCTGCCAGGCGAAAGATCTCCCGATCCGCGACTGGGTCAAGCTCGCCGTCAACCGTGCCCGC GCCACCGGCGCTCCGGCCGTCTTCTGGCTCGACAAGAACAGGGCTCACGACGCCCAGATGATCAAGAAGGTGGAGACCTA CCTGAAGGACCACGACACCAAAGGGCTCGAGCTGCACATCATGTCCCCGGTCGAGGCGATGAAATTCACCCTCCCCAGGG CCAAGAAGGGTCTCGACACCATCACCGTGACCGGCAACGCGCTCAGGGATTACCTGACCGACCTGTTCCCGATCCTCGAG CTCGGCACCTCCGCGAAGATGCTCTCCATCGTTCCGCTTCTTGCGGGCGGCGGCCTCTTCGAAACCGGTGCGGGCGGTTC TGCTCCGAAGCACGTGCAGCAGTTCCAGCAGGAAGGCTACCTCCGTTGGGACTCCCTGGGCGAGTTCCTGGCCCTGGCAG TCTCCCTGGAGCACCTGGCAGCAACCTTCAAAAACGAGAAGGCAGCACTCCTCGCCGAGACCCTCGACGCAGCCAACACC AAGTTCCTGGATCAGAACAAGAACCCGGCGCGTAAGGTAGGCCAGATCGACAACCGCGGCAGCCACTTCTACCTCGCCAT GTACTGGGCCGAGGCGGTCGCCGCCCAGACCAAGGACGCGGACCTCGCAGCCCGCTTCGCCAAGGTCGCCAAGGAGCTCC AGGCCAACGAAGAGAAGATCAACGCCGAGCTGATCGGCGCACAGGGCAAGCCGGTCGACATGGGCGGTTACTACCACGCC GACGATGCCAAGACCGAAGCGGCTATGCGCCCGAGCGCAACGCTGAACGCCATCATCAACTCGATCGTATAA
Upstream 100 bases:
>100_bases CCCGCAAGCGAATAAAACAGCATATCGGGCACACCGTAGCCGCATAGTTGCCCCTTGAAAACGACTTTAGTGCAATTGGC ATGAAACCCAAGGAGAGACA
Downstream 100 bases:
>100_bases AGCTTTCGCTGCACCAGGTAGATAATCTCAATTTAATTACGGAGGAAGAAAAAATGGCACGTAAGAAAATCGCACTTATC GGTGGTGGACAGATTGGCGG
Product: isocitrate dehydrogenase, NADP-dependent
Products: NA
Alternate protein names: IDH; Oxalosuccinate decarboxylase [H]
Number of amino acids: Translated: 743; Mature: 742
Protein sequence:
>743_residues MTTEKAKIVWTKIDEAPALATYSLLPIVNAFTKAAGVVVETRDISLAGRIIANFPDYLTESQKIPDELAYLGELTQKPEA NIIKLPNVSASIPQLKAAIAELQSQGYKLPEYPEEPKTDEEKALNARYAKVLGSAVNPVLREGNSDRRVAKAVKEYAKKH PHKMGAWSSDSKSHVSNMSAGDFYHSEKSVTLKDATVARIEFVDNFGNVTVMKEKLPLQAGEVLDGSFMNVRALRKFIQE QIDDAKAKGVLFSVHLKATMMKISDPVIFGHFVSVYFKDVFEKHAATFKEIGVNADLGLGDLYKKLEKVPAGKKAEIEAD IKATYAKQPPLAMVDSDKGITNLHASNDIIIDASMPVVIRDSGKMWAPDGKLADTKCVIPDTCYSEWYQECIQFCKENGQ FDPTTMGATSNVGLMAQKAEEYGSHDKTFKAPLNGTMRVVDASGEVLIQHQVEEGDIWRGCQAKDLPIRDWVKLAVNRAR ATGAPAVFWLDKNRAHDAQMIKKVETYLKDHDTKGLELHIMSPVEAMKFTLPRAKKGLDTITVTGNALRDYLTDLFPILE LGTSAKMLSIVPLLAGGGLFETGAGGSAPKHVQQFQQEGYLRWDSLGEFLALAVSLEHLAATFKNEKAALLAETLDAANT KFLDQNKNPARKVGQIDNRGSHFYLAMYWAEAVAAQTKDADLAARFAKVAKELQANEEKINAELIGAQGKPVDMGGYYHA DDAKTEAAMRPSATLNAIINSIV
Sequences:
>Translated_743_residues MTTEKAKIVWTKIDEAPALATYSLLPIVNAFTKAAGVVVETRDISLAGRIIANFPDYLTESQKIPDELAYLGELTQKPEA NIIKLPNVSASIPQLKAAIAELQSQGYKLPEYPEEPKTDEEKALNARYAKVLGSAVNPVLREGNSDRRVAKAVKEYAKKH PHKMGAWSSDSKSHVSNMSAGDFYHSEKSVTLKDATVARIEFVDNFGNVTVMKEKLPLQAGEVLDGSFMNVRALRKFIQE QIDDAKAKGVLFSVHLKATMMKISDPVIFGHFVSVYFKDVFEKHAATFKEIGVNADLGLGDLYKKLEKVPAGKKAEIEAD IKATYAKQPPLAMVDSDKGITNLHASNDIIIDASMPVVIRDSGKMWAPDGKLADTKCVIPDTCYSEWYQECIQFCKENGQ FDPTTMGATSNVGLMAQKAEEYGSHDKTFKAPLNGTMRVVDASGEVLIQHQVEEGDIWRGCQAKDLPIRDWVKLAVNRAR ATGAPAVFWLDKNRAHDAQMIKKVETYLKDHDTKGLELHIMSPVEAMKFTLPRAKKGLDTITVTGNALRDYLTDLFPILE LGTSAKMLSIVPLLAGGGLFETGAGGSAPKHVQQFQQEGYLRWDSLGEFLALAVSLEHLAATFKNEKAALLAETLDAANT KFLDQNKNPARKVGQIDNRGSHFYLAMYWAEAVAAQTKDADLAARFAKVAKELQANEEKINAELIGAQGKPVDMGGYYHA DDAKTEAAMRPSATLNAIINSIV >Mature_742_residues TTEKAKIVWTKIDEAPALATYSLLPIVNAFTKAAGVVVETRDISLAGRIIANFPDYLTESQKIPDELAYLGELTQKPEAN IIKLPNVSASIPQLKAAIAELQSQGYKLPEYPEEPKTDEEKALNARYAKVLGSAVNPVLREGNSDRRVAKAVKEYAKKHP HKMGAWSSDSKSHVSNMSAGDFYHSEKSVTLKDATVARIEFVDNFGNVTVMKEKLPLQAGEVLDGSFMNVRALRKFIQEQ IDDAKAKGVLFSVHLKATMMKISDPVIFGHFVSVYFKDVFEKHAATFKEIGVNADLGLGDLYKKLEKVPAGKKAEIEADI KATYAKQPPLAMVDSDKGITNLHASNDIIIDASMPVVIRDSGKMWAPDGKLADTKCVIPDTCYSEWYQECIQFCKENGQF DPTTMGATSNVGLMAQKAEEYGSHDKTFKAPLNGTMRVVDASGEVLIQHQVEEGDIWRGCQAKDLPIRDWVKLAVNRARA TGAPAVFWLDKNRAHDAQMIKKVETYLKDHDTKGLELHIMSPVEAMKFTLPRAKKGLDTITVTGNALRDYLTDLFPILEL GTSAKMLSIVPLLAGGGLFETGAGGSAPKHVQQFQQEGYLRWDSLGEFLALAVSLEHLAATFKNEKAALLAETLDAANTK FLDQNKNPARKVGQIDNRGSHFYLAMYWAEAVAAQTKDADLAARFAKVAKELQANEEKINAELIGAQGKPVDMGGYYHAD DAKTEAAMRPSATLNAIINSIV
Specific function: Unknown
COG id: COG2838
COG function: function code C; Monomeric isocitrate dehydrogenase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the monomeric-type IDH family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001804 - InterPro: IPR004436 [H]
Pfam domain/function: PF03971 IDH [H]
EC number: =1.1.1.42 [H]
Molecular weight: Translated: 81508; Mature: 81377
Theoretical pI: Translated: 6.77; Mature: 6.77
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTEKAKIVWTKIDEAPALATYSLLPIVNAFTKAAGVVVETRDISLAGRIIANFPDYLTE CCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHCCCHHHCC SQKIPDELAYLGELTQKPEANIIKLPNVSASIPQLKAAIAELQSQGYKLPEYPEEPKTDE CCCCHHHHHHHHHHCCCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCH EKALNARYAKVLGSAVNPVLREGNSDRRVAKAVKEYAKKHPHKMGAWSSDSKSHVSNMSA HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCC GDFYHSEKSVTLKDATVARIEFVDNFGNVTVMKEKLPLQAGEVLDGSFMNVRALRKFIQE CCCCCCCCCEEEECCCEEEEEEECCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHH QIDDAKAKGVLFSVHLKATMMKISDPVIFGHFVSVYFKDVFEKHAATFKEIGVNADLGLG HHHHHHHCCEEEEEEHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH DLYKKLEKVPAGKKAEIEADIKATYAKQPPLAMVDSDKGITNLHASNDIIIDASMPVVIR HHHHHHHHCCCCCCCEEEECHHHHCCCCCCCEEEECCCCCEEEECCCCEEEECCCCEEEE DSGKMWAPDGKLADTKCVIPDTCYSEWYQECIQFCKENGQFDPTTMGATSNVGLMAQKAE CCCCEECCCCCCCCCEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHH EYGSHDKTFKAPLNGTMRVVDASGEVLIQHQVEEGDIWRGCQAKDLPIRDWVKLAVNRAR HHCCCCCEEECCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHH ATGAPAVFWLDKNRAHDAQMIKKVETYLKDHDTKGLELHIMSPVEAMKFTLPRAKKGLDT CCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHCCHHHCCCCE ITVTGNALRDYLTDLFPILELGTSAKMLSIVPLLAGGGLFETGAGGSAPKHVQQFQQEGY EEECHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCEEECCCCCCCHHHHHHHHHCCC LRWDSLGEFLALAVSLEHLAATFKNEKAALLAETLDAANTKFLDQNKNPARKVGQIDNRG EEHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCCC SHFYLAMYWAEAVAAQTKDADLAARFAKVAKELQANEEKINAELIGAQGKPVDMGGYYHA CEEEEHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHCCCEEECCCCCCCCCCCEEEC DDAKTEAAMRPSATLNAIINSIV CCCHHHHHCCCCHHHHHHHHHCC >Mature Secondary Structure TTEKAKIVWTKIDEAPALATYSLLPIVNAFTKAAGVVVETRDISLAGRIIANFPDYLTE CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHCCCHHHCC SQKIPDELAYLGELTQKPEANIIKLPNVSASIPQLKAAIAELQSQGYKLPEYPEEPKTDE CCCCHHHHHHHHHHCCCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCH EKALNARYAKVLGSAVNPVLREGNSDRRVAKAVKEYAKKHPHKMGAWSSDSKSHVSNMSA HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCC GDFYHSEKSVTLKDATVARIEFVDNFGNVTVMKEKLPLQAGEVLDGSFMNVRALRKFIQE CCCCCCCCCEEEECCCEEEEEEECCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHH QIDDAKAKGVLFSVHLKATMMKISDPVIFGHFVSVYFKDVFEKHAATFKEIGVNADLGLG HHHHHHHCCEEEEEEHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH DLYKKLEKVPAGKKAEIEADIKATYAKQPPLAMVDSDKGITNLHASNDIIIDASMPVVIR HHHHHHHHCCCCCCCEEEECHHHHCCCCCCCEEEECCCCCEEEECCCCEEEECCCCEEEE DSGKMWAPDGKLADTKCVIPDTCYSEWYQECIQFCKENGQFDPTTMGATSNVGLMAQKAE CCCCEECCCCCCCCCEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHH EYGSHDKTFKAPLNGTMRVVDASGEVLIQHQVEEGDIWRGCQAKDLPIRDWVKLAVNRAR HHCCCCCEEECCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHH ATGAPAVFWLDKNRAHDAQMIKKVETYLKDHDTKGLELHIMSPVEAMKFTLPRAKKGLDT CCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHCCHHHCCCCE ITVTGNALRDYLTDLFPILELGTSAKMLSIVPLLAGGGLFETGAGGSAPKHVQQFQQEGY EEECHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCEEECCCCCCCHHHHHHHHHCCC LRWDSLGEFLALAVSLEHLAATFKNEKAALLAETLDAANTKFLDQNKNPARKVGQIDNRG EEHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCCC SHFYLAMYWAEAVAAQTKDADLAARFAKVAKELQANEEKINAELIGAQGKPVDMGGYYHA CEEEEHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHCCCEEECCCCCCCCCCCEEEC DDAKTEAAMRPSATLNAIINSIV CCCHHHHHCCCCHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12005040; 4149369; 12467571 [H]