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The map label for this gene is ygaU [C]

Identifier: 197119274

GI number: 197119274

Start: 3348049

End: 3348741

Strand: Reverse

Name: ygaU [C]

Synonym: Gbem_2902

Alternate gene names: 197119274

Gene position: 3348741-3348049 (Counterclockwise)

Preceding gene: 197119275

Following gene: 197119273

Centisome position: 72.56

GC content: 66.09

Gene sequence:

>693_bases
TTGAAGCTCGCCGTCCGGTTCATAACTCTTTTGCTCGTCATTTCAGCGGCGGCCTGCGCAACGCAGCCGCCGCGTTTTCG
CGATGAGGCGAGCGCGAGGCTCGAACAGCTGAGGCTCCAAGGGGGCGAGCGGCTGCACCCGAACGAGTACGCCGGCACGC
TGCAGGCCTTTTTCAAAGGGGACTCGCTGCTTTTGGCCAACGAGCGCGAGGAGGCGGATCGCTACTTCGAGCTGACCCTC
TTGAAGGCCGAGCTGCTGGAAAAGACCCTCAACGAGGAAAAGGCGCGTGAGCAGGCCGCGCGCGAGCGGGCCGAAGAGGA
AAAGCGGCGCGCCGAACGTGAGAAAAAGGCGCTGGAGGAAGCGGATCGGCGGGCCCGGGCGAAAGCCGCCGCCGAAGAGA
GGGCGAAGCGTGAGGCGGCTGAGGTCGAGCGCAGAAAACCCAAGCCTCAAAAGGAGCCGCAACTCGTCGCCTCCTACACG
GTGAGAAGGGGCGAATCCCTCCCCCTCATTGCCTCGCGTCCCGAGGTCTACGGCGACCGCGTCCTATGGCCGCTTCTCTA
CCGCGCCAACCGGGACCAGATCCGGGACCCAAGGCACATCTGGCCCGGCCAGGTGCTGCGCATCCCCCGCAACCAGGGGC
GCGACGACATCTCCGAGGCCAGGCGCTACGCCCAGGAACACCCGCTGCACTGA

Upstream 100 bases:

>100_bases
CCCAGAAGGGGGCCTGCCTCATGTCGGACGCCCCCTCCGGTGTCGATGCACTGCAGCTGCGCGAGCTCGGCATTCGTCTC
GCCGCCAAGTAGGGGGGCTG

Downstream 100 bases:

>100_bases
CCGCTGTTGACGATATATTTAAACAGTATTTTGCCGTCGTCAAATCCGACTCCACACCCCTTTGCACCACCGCGGATCGA
GTGATTTTAACCCCTTGAAC

Product: LysM domain lipoprotein

Products: NA

Alternate protein names: LysM Domain Lipoprotein

Number of amino acids: Translated: 230; Mature: 230

Protein sequence:

>230_residues
MKLAVRFITLLLVISAAACATQPPRFRDEASARLEQLRLQGGERLHPNEYAGTLQAFFKGDSLLLANEREEADRYFELTL
LKAELLEKTLNEEKAREQAARERAEEEKRRAEREKKALEEADRRARAKAAAEERAKREAAEVERRKPKPQKEPQLVASYT
VRRGESLPLIASRPEVYGDRVLWPLLYRANRDQIRDPRHIWPGQVLRIPRNQGRDDISEARRYAQEHPLH

Sequences:

>Translated_230_residues
MKLAVRFITLLLVISAAACATQPPRFRDEASARLEQLRLQGGERLHPNEYAGTLQAFFKGDSLLLANEREEADRYFELTL
LKAELLEKTLNEEKAREQAARERAEEEKRRAEREKKALEEADRRARAKAAAEERAKREAAEVERRKPKPQKEPQLVASYT
VRRGESLPLIASRPEVYGDRVLWPLLYRANRDQIRDPRHIWPGQVLRIPRNQGRDDISEARRYAQEHPLH
>Mature_230_residues
MKLAVRFITLLLVISAAACATQPPRFRDEASARLEQLRLQGGERLHPNEYAGTLQAFFKGDSLLLANEREEADRYFELTL
LKAELLEKTLNEEKAREQAARERAEEEKRRAEREKKALEEADRRARAKAAAEERAKREAAEVERRKPKPQKEPQLVASYT
VRRGESLPLIASRPEVYGDRVLWPLLYRANRDQIRDPRHIWPGQVLRIPRNQGRDDISEARRYAQEHPLH

Specific function: Unknown

COG id: COG1652

COG function: function code S; Uncharacterized protein containing LysM domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 4340 Molecules/Cell In: Early Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 26734; Mature: 26734

Theoretical pI: Translated: 10.07; Mature: 10.07

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
0.4 %Met     (Translated Protein)
0.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLAVRFITLLLVISAAACATQPPRFRDEASARLEQLRLQGGERLHPNEYAGTLQAFFKG
CHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCC
DSLLLANEREEADRYFELTLLKAELLEKTLNEEKAREQAARERAEEEKRRAEREKKALEE
CEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ADRRARAKAAAEERAKREAAEVERRKPKPQKEPQLVASYTVRRGESLPLIASRPEVYGDR
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHH
VLWPLLYRANRDQIRDPRHIWPGQVLRIPRNQGRDDISEARRYAQEHPLH
HHHHHHHHCCHHHCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHCCCC
>Mature Secondary Structure
MKLAVRFITLLLVISAAACATQPPRFRDEASARLEQLRLQGGERLHPNEYAGTLQAFFKG
CHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCC
DSLLLANEREEADRYFELTLLKAELLEKTLNEEKAREQAARERAEEEKRRAEREKKALEE
CEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ADRRARAKAAAEERAKREAAEVERRKPKPQKEPQLVASYTVRRGESLPLIASRPEVYGDR
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHH
VLWPLLYRANRDQIRDPRHIWPGQVLRIPRNQGRDDISEARRYAQEHPLH
HHHHHHHHCCHHHCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA