| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
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The map label for this gene is 197119113
Identifier: 197119113
GI number: 197119113
Start: 3167693
End: 3169525
Strand: Reverse
Name: 197119113
Synonym: Gbem_2740
Alternate gene names: NA
Gene position: 3169525-3167693 (Counterclockwise)
Preceding gene: 197119114
Following gene: 197119110
Centisome position: 68.68
GC content: 60.56
Gene sequence:
>1833_bases GTGGCTCTTTTCTCTAAGATGCGCGCTGTACTCATGTTGCTGCTCATTCCGGTCGCCGCTTCCGCAGCCCCGCTTGATGA CTACTACCTCTCGAAATTAGGGGAGCGGGCTCAGTTGGCCAAGGCTTTGAGCGCGGTGGTGGGGCTTGAGACCGGGCCTG CCGAGCGCTGCCGCACCGGCCTCTATCGCAGCTTGAAGCGCGACTTCAAGGCGCTGGAACCCGCCACCCAGAAGACGCTG GCGAAATACGTCGCAAGGCCTGTCCTCTCGTCGGAGGCTGTCTATGTCTCCCCTGGCGGACACTTCAACATCCACTACGC GACCTCCGGTTCCGATGCTCCCGTGCTTACCGACACCACCCCCGCCAACGGGATCCCGGACTGGGTCGAACGCGTGGCCC AGGTTTTCGAATACGTCTATGCCGACGAGGTAACCGCCAAGGGTTACCGCCCGCCTCCGGTCAGCGGCAGATACGACGTG TATCTCCGTGACCTTCTAACCGAGCAGGCCTACGGTTATACCAAGTTCGACAGCGTGCCTGCCTCCGCAGTCTCGGTGCC GAGCTATATCGAGATTGACAAGGCTTTCAGCGACCATATCTTCACTGTCAATGGCTTATACAGCAGCGATCAGATGCTGC AGATCACGGCTGCCCACGAGTTTCATCACGCCATCCAGTTCGGCTATAACTACTACTTCGATATCTGGTACGGCGAAGTC ACCTCCACCTGGATGGAGGATGAGGTGTACGACTCGGTGAACCAGTGTTACAGCTACCTTCCCAAGTACCTGCCCTTGGC AAGCACCATCTCCCTCAACATGGGTCTGTACCAGAATTCCGAGTACGGCCGCTGGATCTTCAACCGGTACCTCGCCGAAC GCCATGGCGCCGGCGCGGTAAAGGCCGCGTGGGAGAAGCTGGCCACGCTGCAGCCTTCCAGCAGTCCGACCACCAGCGAC GGGGACATTCAGATGGGGCCGGTGCTGGACTCGGTGCTCTCAACCTCTTACAGCAGCAGCCTCAGCGCCGATTTCCTGGG TTTTGCCAAGAAGGTCTACACCAGAGACTGGAATACCCACATACCTGACATAAGTATGATCCCGCTCCATGCTGTCGCGG CTACGTACTCCTCCTATCCGGTCAACATCAGTTCCACCGATAGGCCGTCGGTCACCCTGCCGCGGTATACCTTTGCCTTT TACCGGTTCGTTCCCTCGCCGGTCATCACCACCTTCAACGTGAGGATCACCAAGACCAGCGGCATCCAGACCGCCCTCTT CAAGAAAGAAAGCGGGGTGGTGAGCGAAATAAGTGCCGACACTGGCGGCAACGCTTATTCGGTAATAGGTTTCAACGCGC TCAACCCTGCCAGCGACGAGGTGGTGCTGCTTGTGGCCAATACCACCGACGTCGACAACCACCAGGCCAATTTCAGCACT GACGGGAGCTCCTTGAATGTCTCCGAGCCGACCGTGGCTGCTTCGGCGGGGGGCGGGGGAGGCTCAAGCGGCGGCGGCTG CTTCATCGCCACCGCGGCATATGGGAGTTACCTGCATCCCAAGGTCGCCGAGCTGAGACAATTCCGGGACCGCCATCTTC TCACCAACGCACCGGGGCGGCTCTTCGTCTCGCTCTATTACCGGCTCAGCCCGCCGATCGCCGAGATCATCGCGGAGCAC GAATGGATGAAGGGTGGGGTGAGGGTTATGCTGGTGCCGGTGGTGCTGTCGGTCGAGCACCCGGCGGGAGCGCTGGCGGC AGTACTGCTGCTGATGGGAGGAGCGGGGGTGGTGAGGCGGAGGAAGCTCGCCCTGGTCCGGGTGCGGCGGTAA
Upstream 100 bases:
>100_bases GCAGCTATAAGATCGGCGCCAGGGGCGCGGTCGAGGTCAAGGTGACAAAAGGCAGTACAACATTTGCTCCGCTTCGCGTG GGCAAAAGGATGGTGGACTA
Downstream 100 bases:
>100_bases CTAAAATCAATTCTCCCTCTCCCTTTGGGAGAGGGTTGGGGTGAGGGACTTTCCTTGAGGGAGAGGGTACTTAAAGGGGG CGTCCAGAGTTCAAACTGGG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 610; Mature: 609
Protein sequence:
>610_residues MALFSKMRAVLMLLLIPVAASAAPLDDYYLSKLGERAQLAKALSAVVGLETGPAERCRTGLYRSLKRDFKALEPATQKTL AKYVARPVLSSEAVYVSPGGHFNIHYATSGSDAPVLTDTTPANGIPDWVERVAQVFEYVYADEVTAKGYRPPPVSGRYDV YLRDLLTEQAYGYTKFDSVPASAVSVPSYIEIDKAFSDHIFTVNGLYSSDQMLQITAAHEFHHAIQFGYNYYFDIWYGEV TSTWMEDEVYDSVNQCYSYLPKYLPLASTISLNMGLYQNSEYGRWIFNRYLAERHGAGAVKAAWEKLATLQPSSSPTTSD GDIQMGPVLDSVLSTSYSSSLSADFLGFAKKVYTRDWNTHIPDISMIPLHAVAATYSSYPVNISSTDRPSVTLPRYTFAF YRFVPSPVITTFNVRITKTSGIQTALFKKESGVVSEISADTGGNAYSVIGFNALNPASDEVVLLVANTTDVDNHQANFST DGSSLNVSEPTVAASAGGGGGSSGGGCFIATAAYGSYLHPKVAELRQFRDRHLLTNAPGRLFVSLYYRLSPPIAEIIAEH EWMKGGVRVMLVPVVLSVEHPAGALAAVLLLMGGAGVVRRRKLALVRVRR
Sequences:
>Translated_610_residues MALFSKMRAVLMLLLIPVAASAAPLDDYYLSKLGERAQLAKALSAVVGLETGPAERCRTGLYRSLKRDFKALEPATQKTL AKYVARPVLSSEAVYVSPGGHFNIHYATSGSDAPVLTDTTPANGIPDWVERVAQVFEYVYADEVTAKGYRPPPVSGRYDV YLRDLLTEQAYGYTKFDSVPASAVSVPSYIEIDKAFSDHIFTVNGLYSSDQMLQITAAHEFHHAIQFGYNYYFDIWYGEV TSTWMEDEVYDSVNQCYSYLPKYLPLASTISLNMGLYQNSEYGRWIFNRYLAERHGAGAVKAAWEKLATLQPSSSPTTSD GDIQMGPVLDSVLSTSYSSSLSADFLGFAKKVYTRDWNTHIPDISMIPLHAVAATYSSYPVNISSTDRPSVTLPRYTFAF YRFVPSPVITTFNVRITKTSGIQTALFKKESGVVSEISADTGGNAYSVIGFNALNPASDEVVLLVANTTDVDNHQANFST DGSSLNVSEPTVAASAGGGGGSSGGGCFIATAAYGSYLHPKVAELRQFRDRHLLTNAPGRLFVSLYYRLSPPIAEIIAEH EWMKGGVRVMLVPVVLSVEHPAGALAAVLLLMGGAGVVRRRKLALVRVRR >Mature_609_residues ALFSKMRAVLMLLLIPVAASAAPLDDYYLSKLGERAQLAKALSAVVGLETGPAERCRTGLYRSLKRDFKALEPATQKTLA KYVARPVLSSEAVYVSPGGHFNIHYATSGSDAPVLTDTTPANGIPDWVERVAQVFEYVYADEVTAKGYRPPPVSGRYDVY LRDLLTEQAYGYTKFDSVPASAVSVPSYIEIDKAFSDHIFTVNGLYSSDQMLQITAAHEFHHAIQFGYNYYFDIWYGEVT STWMEDEVYDSVNQCYSYLPKYLPLASTISLNMGLYQNSEYGRWIFNRYLAERHGAGAVKAAWEKLATLQPSSSPTTSDG DIQMGPVLDSVLSTSYSSSLSADFLGFAKKVYTRDWNTHIPDISMIPLHAVAATYSSYPVNISSTDRPSVTLPRYTFAFY RFVPSPVITTFNVRITKTSGIQTALFKKESGVVSEISADTGGNAYSVIGFNALNPASDEVVLLVANTTDVDNHQANFSTD GSSLNVSEPTVAASAGGGGGSSGGGCFIATAAYGSYLHPKVAELRQFRDRHLLTNAPGRLFVSLYYRLSPPIAEIIAEHE WMKGGVRVMLVPVVLSVEHPAGALAAVLLLMGGAGVVRRRKLALVRVRR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 66580; Mature: 66449
Theoretical pI: Translated: 7.04; Mature: 7.04
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MALFSKMRAVLMLLLIPVAASAAPLDDYYLSKLGERAQLAKALSAVVGLETGPAERCRTG CCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCHHHHHHHHHHHHHCCCCCCHHHHHHH LYRSLKRDFKALEPATQKTLAKYVARPVLSSEAVYVSPGGHFNIHYATSGSDAPVLTDTT HHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCEEEECCCCEEEEEEEECCCCCCEEECCC PANGIPDWVERVAQVFEYVYADEVTAKGYRPPPVSGRYDVYLRDLLTEQAYGYTKFDSVP CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCC ASAVSVPSYIEIDKAFSDHIFTVNGLYSSDQMLQITAAHEFHHAIQFGYNYYFDIWYGEV CHHHCCCCCEEHHHHHCCCEEEEECCCCCCCEEEEEHHHHHHHHHHHCCEEEEEEEECCH TSTWMEDEVYDSVNQCYSYLPKYLPLASTISLNMGLYQNSEYGRWIFNRYLAERHGAGAV HHHHHHHHHHHHHHHHHHHHHHHCCCHHEEEEEECEEECCCCHHHHHHHHHHHHCCCCHH KAAWEKLATLQPSSSPTTSDGDIQMGPVLDSVLSTSYSSSLSADFLGFAKKVYTRDWNTH HHHHHHHHHCCCCCCCCCCCCCEEEHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCC IPDISMIPLHAVAATYSSYPVNISSTDRPSVTLPRYTFAFYRFVPSPVITTFNVRITKTS CCCCEEHHHHHHHHHHCCCCEECCCCCCCCEECCHHHHHHHHHCCCCEEEEEEEEEEECC GIQTALFKKESGVVSEISADTGGNAYSVIGFNALNPASDEVVLLVANTTDVDNHQANFST CCEEEEHCCCCCCCEEECCCCCCCEEEEEEECCCCCCCCCEEEEEECCCCCCCCCCCCCC DGSSLNVSEPTVAASAGGGGGSSGGGCFIATAAYGSYLHPKVAELRQFRDRHLLTNAPGR CCCEEECCCCCEEEECCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCC LFVSLYYRLSPPIAEIIAEHEWMKGGVRVMLVPVVLSVEHPAGALAAVLLLMGGAGVVRR EEEEEHHHCCCCHHHHHHHHHHHCCCCEEEEEEEEEECCCCHHHHHHHHHHHCCCCHHHH RKLALVRVRR HHHHEEEECC >Mature Secondary Structure ALFSKMRAVLMLLLIPVAASAAPLDDYYLSKLGERAQLAKALSAVVGLETGPAERCRTG CHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCHHHHHHHHHHHHHCCCCCCHHHHHHH LYRSLKRDFKALEPATQKTLAKYVARPVLSSEAVYVSPGGHFNIHYATSGSDAPVLTDTT HHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCEEEECCCCEEEEEEEECCCCCCEEECCC PANGIPDWVERVAQVFEYVYADEVTAKGYRPPPVSGRYDVYLRDLLTEQAYGYTKFDSVP CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCC ASAVSVPSYIEIDKAFSDHIFTVNGLYSSDQMLQITAAHEFHHAIQFGYNYYFDIWYGEV CHHHCCCCCEEHHHHHCCCEEEEECCCCCCCEEEEEHHHHHHHHHHHCCEEEEEEEECCH TSTWMEDEVYDSVNQCYSYLPKYLPLASTISLNMGLYQNSEYGRWIFNRYLAERHGAGAV HHHHHHHHHHHHHHHHHHHHHHHCCCHHEEEEEECEEECCCCHHHHHHHHHHHHCCCCHH KAAWEKLATLQPSSSPTTSDGDIQMGPVLDSVLSTSYSSSLSADFLGFAKKVYTRDWNTH HHHHHHHHHCCCCCCCCCCCCCEEEHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCC IPDISMIPLHAVAATYSSYPVNISSTDRPSVTLPRYTFAFYRFVPSPVITTFNVRITKTS CCCCEEHHHHHHHHHHCCCCEECCCCCCCCEECCHHHHHHHHHCCCCEEEEEEEEEEECC GIQTALFKKESGVVSEISADTGGNAYSVIGFNALNPASDEVVLLVANTTDVDNHQANFST CCEEEEHCCCCCCCEEECCCCCCCEEEEEEECCCCCCCCCEEEEEECCCCCCCCCCCCCC DGSSLNVSEPTVAASAGGGGGSSGGGCFIATAAYGSYLHPKVAELRQFRDRHLLTNAPGR CCCEEECCCCCEEEECCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCC LFVSLYYRLSPPIAEIIAEHEWMKGGVRVMLVPVVLSVEHPAGALAAVLLLMGGAGVVRR EEEEEHHHCCCCHHHHHHHHHHHCCCCEEEEEEEEEECCCCHHHHHHHHHHHCCCCHHHH RKLALVRVRR HHHHEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA