| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
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The map label for this gene is 197118900
Identifier: 197118900
GI number: 197118900
Start: 2925072
End: 2925974
Strand: Direct
Name: 197118900
Synonym: Gbem_2523
Alternate gene names: NA
Gene position: 2925072-2925974 (Clockwise)
Preceding gene: 197118898
Following gene: 197118901
Centisome position: 63.38
GC content: 50.61
Gene sequence:
>903_bases ATGAGCAACGTGATCGAAATCGTCGAATTCACCGATCCGGTTTGCACCTGGTGCTGGGGCAGCGAGCCTGTTCTGCATAA GCTGGAAACTAGATATGGCGAACAGGTAAAAGTCAGTTTTATCATGGCAGGTTTGGTTAAGGACATCACGGCGTTTTACG ACAGCTACAACGACATCGGAGGAGACCCGGTCCGCTCCAATAGGCAAATCGCAAAGCATTGGCTTGAAGCTTCCCAGCGT CACGGAATGCCTGTAAAAATCGATGGATTCGGGTTGTTTTCTCGGGAGCGGGTGTCTTCGTACCCGTTGAATATCGCTTA CAAAGCAGCACAAATACAAGATCAAACCATGGCCAACAGATTTCTTAGGCGCATTCGTGAAGCATCTGCTGCCGAGGCGA AGTTGACAAATACGACCGAGGTATTGGTAGAATTGGCCTCCGAAGTAGGTCTGGATGTCGCCCGCTTTGTGGAGGATTTT TCCAGCGGAGCCGCCCAGGAGGCTTTCGAGCAGGATCTCGCGACAACGGAACGATATAATGCCCGAGGTTTTCCCACTTT TCTCGTGCGATTTGCTGGAAAGGAGACTCTTCTACGTGGATACAGGAGGTATGAAGATTTCAAGGCTGTGATTGGACTGA TGACAGAAGAAACAATTATTGAGCGGCCGACTCCCGCCAGCGAAGAGGCAATCTTTGCCTTTATACGAAGATACGGCTCA GTCGCACCCGTCGAAATCGCAACGACCTTCGACCTGACTGGTGGAGAATTGGCATCCACGCTGGCTTCGCTTGTGCTCAA ACAGACAATCGTGTGCCGTGAAGCGGGAAATGGATATTTTGTATCCCCCAAAATTAGTTCAGCGGCTTGCGATACTGCAA CCGGCATCTGCAAGGCAGTTTGA
Upstream 100 bases:
>100_bases GCAATATTTTTTGCTTGGCACGCATATCGCTTTGATTTCAAATCGCAAATGATTCGCCGAAGGCATTTGCCTGATTTTCA CCAAAAAATGGAGGTATACA
Downstream 100 bases:
>100_bases CCGTAAACTAGAAAACGTTAGTCCCCATCCAGAAAAAGGCCTTGTCAAATCAGCTCCCTAAATCCGATACAGAAGGAGAC AGTCATGAAAACCGAAAAAT
Product: thiol oxidoreductase, DsbA family, FrnE subfamily
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 300; Mature: 299
Protein sequence:
>300_residues MSNVIEIVEFTDPVCTWCWGSEPVLHKLETRYGEQVKVSFIMAGLVKDITAFYDSYNDIGGDPVRSNRQIAKHWLEASQR HGMPVKIDGFGLFSRERVSSYPLNIAYKAAQIQDQTMANRFLRRIREASAAEAKLTNTTEVLVELASEVGLDVARFVEDF SSGAAQEAFEQDLATTERYNARGFPTFLVRFAGKETLLRGYRRYEDFKAVIGLMTEETIIERPTPASEEAIFAFIRRYGS VAPVEIATTFDLTGGELASTLASLVLKQTIVCREAGNGYFVSPKISSAACDTATGICKAV
Sequences:
>Translated_300_residues MSNVIEIVEFTDPVCTWCWGSEPVLHKLETRYGEQVKVSFIMAGLVKDITAFYDSYNDIGGDPVRSNRQIAKHWLEASQR HGMPVKIDGFGLFSRERVSSYPLNIAYKAAQIQDQTMANRFLRRIREASAAEAKLTNTTEVLVELASEVGLDVARFVEDF SSGAAQEAFEQDLATTERYNARGFPTFLVRFAGKETLLRGYRRYEDFKAVIGLMTEETIIERPTPASEEAIFAFIRRYGS VAPVEIATTFDLTGGELASTLASLVLKQTIVCREAGNGYFVSPKISSAACDTATGICKAV >Mature_299_residues SNVIEIVEFTDPVCTWCWGSEPVLHKLETRYGEQVKVSFIMAGLVKDITAFYDSYNDIGGDPVRSNRQIAKHWLEASQRH GMPVKIDGFGLFSRERVSSYPLNIAYKAAQIQDQTMANRFLRRIREASAAEAKLTNTTEVLVELASEVGLDVARFVEDFS SGAAQEAFEQDLATTERYNARGFPTFLVRFAGKETLLRGYRRYEDFKAVIGLMTEETIIERPTPASEEAIFAFIRRYGSV APVEIATTFDLTGGELASTLASLVLKQTIVCREAGNGYFVSPKISSAACDTATGICKAV
Specific function: Unknown
COG id: COG2761
COG function: function code Q; Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0413 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001853 - InterPro: IPR023169 - InterPro: IPR012336 - InterPro: IPR012335 [H]
Pfam domain/function: PF01323 DSBA [H]
EC number: NA
Molecular weight: Translated: 33261; Mature: 33130
Theoretical pI: Translated: 5.11; Mature: 5.11
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSNVIEIVEFTDPVCTWCWGSEPVLHKLETRYGEQVKVSFIMAGLVKDITAFYDSYNDIG CCCHHHHHHHCCCHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCC GDPVRSNRQIAKHWLEASQRHGMPVKIDGFGLFSRERVSSYPLNIAYKAAQIQDQTMANR CCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHCCCCCEEEHHHHHHHHHHHHH FLRRIREASAAEAKLTNTTEVLVELASEVGLDVARFVEDFSSGAAQEAFEQDLATTERYN HHHHHHHHHHHHHHCCHHHHHHHHHHHHHCHHHHHHHHHHHCCHHHHHHHHHHHHHHHCC ARGFPTFLVRFAGKETLLRGYRRYEDFKAVIGLMTEETIIERPTPASEEAIFAFIRRYGS CCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCC VAPVEIATTFDLTGGELASTLASLVLKQTIVCREAGNGYFVSPKISSAACDTATGICKAV CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHHCC >Mature Secondary Structure SNVIEIVEFTDPVCTWCWGSEPVLHKLETRYGEQVKVSFIMAGLVKDITAFYDSYNDIG CCHHHHHHHCCCHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCC GDPVRSNRQIAKHWLEASQRHGMPVKIDGFGLFSRERVSSYPLNIAYKAAQIQDQTMANR CCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHCCCCCEEEHHHHHHHHHHHHH FLRRIREASAAEAKLTNTTEVLVELASEVGLDVARFVEDFSSGAAQEAFEQDLATTERYN HHHHHHHHHHHHHHCCHHHHHHHHHHHHHCHHHHHHHHHHHCCHHHHHHHHHHHHHHHCC ARGFPTFLVRFAGKETLLRGYRRYEDFKAVIGLMTEETIIERPTPASEEAIFAFIRRYGS CCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCC VAPVEIATTFDLTGGELASTLASLVLKQTIVCREAGNGYFVSPKISSAACDTATGICKAV CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11058132 [H]