Click here to switch to the map view.

The map label for this gene is ybbK [C]

Identifier: 197118897

GI number: 197118897

Start: 2920879

End: 2921655

Strand: Reverse

Name: ybbK [C]

Synonym: Gbem_2520

Alternate gene names: 197118897

Gene position: 2921655-2920879 (Counterclockwise)

Preceding gene: 197118899

Following gene: 197118896

Centisome position: 63.31

GC content: 59.97

Gene sequence:

>777_bases
ATGAACGTGTTCGACCTGTTCCCGGTATTGTTCGTTCTTGTCCTGATAGTAGCTTTCCTCGCCAATGCCATTCGCATACT
CCCCGAATATGAGAGGGGGGTCCTCTTCAGACTGGGTAGGGTGAAGAAGGTCCGCGGCCCCGGCATCGTGCTCATCATCC
CGGGTATCGACCGGCTGGTGCGCGTGTCGCTCAGGATAGTTGCGATGGACGTCCCGTCGCAGGACGTCATTACCCATGAC
AACGTGACGGTGAAGGTGTCGGCGGTGATCTACTTTCGGGTGGTGGATGCTGTGCGCGCGGTGGTGGAGATGGAGAACTA
CCTCTACGCTACGAGCCAGCTCTCGCAGACTACCTTGCGCAGCGTGCTGGGGCAGGTGGACCTGGACGAGCTTCTGGCAA
ACCGGGAAAAGATCAATCGCGAGTTGCAGGAGATCCTCGACCGGCAGACTGAGCCTTGGGGGGTAAAGGTCTCGACTGTC
GAGGTGAAGAACATCGATTTGCCGCAGGAGATGCAGCGCGCCATCGCGAAGCAGGCGGAGGCGGAAAGGGAGCGCCGCGC
CAAGGTGATCCACGCCGAGGGCGAGCTGCAGGCCTCGGAAAAGCTGGCCCAGGCGGCGCAGGTGATGGTGGCGCAGCCGA
TGTCGCTGCAACTGCGTTATCTACAGACGCTCACAGAGATAGCGGCCGAGAAGAACTCGACCACCATCTTCCCGGTCCCC
ATCGATCTGATCAAGATCTTCATGGATCGCATGGACGCGGGGAGGAAGAGCGATTGA

Upstream 100 bases:

>100_bases
ATGGATGAAGAGTTTTGGCAAGCCAGCAATTGACTGAGACTGTTGCTTAGTTATACTTTGGCGGGCCTTTGCGGACCACA
ACTATTTCTCGGAGGGGATC

Downstream 100 bases:

>100_bases
CGGCTGTGACCCGAACTCTCTCGATGTCGTATACATATTTGAATCGGTGCTCTGAAGAGATATCATTGTTGTCAGTACTG
ACACTGTTTGAAATGCAATA

Product: flotillin band_7_stomatin-like domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 258; Mature: 258

Protein sequence:

>258_residues
MNVFDLFPVLFVLVLIVAFLANAIRILPEYERGVLFRLGRVKKVRGPGIVLIIPGIDRLVRVSLRIVAMDVPSQDVITHD
NVTVKVSAVIYFRVVDAVRAVVEMENYLYATSQLSQTTLRSVLGQVDLDELLANREKINRELQEILDRQTEPWGVKVSTV
EVKNIDLPQEMQRAIAKQAEAERERRAKVIHAEGELQASEKLAQAAQVMVAQPMSLQLRYLQTLTEIAAEKNSTTIFPVP
IDLIKIFMDRMDAGRKSD

Sequences:

>Translated_258_residues
MNVFDLFPVLFVLVLIVAFLANAIRILPEYERGVLFRLGRVKKVRGPGIVLIIPGIDRLVRVSLRIVAMDVPSQDVITHD
NVTVKVSAVIYFRVVDAVRAVVEMENYLYATSQLSQTTLRSVLGQVDLDELLANREKINRELQEILDRQTEPWGVKVSTV
EVKNIDLPQEMQRAIAKQAEAERERRAKVIHAEGELQASEKLAQAAQVMVAQPMSLQLRYLQTLTEIAAEKNSTTIFPVP
IDLIKIFMDRMDAGRKSD
>Mature_258_residues
MNVFDLFPVLFVLVLIVAFLANAIRILPEYERGVLFRLGRVKKVRGPGIVLIIPGIDRLVRVSLRIVAMDVPSQDVITHD
NVTVKVSAVIYFRVVDAVRAVVEMENYLYATSQLSQTTLRSVLGQVDLDELLANREKINRELQEILDRQTEPWGVKVSTV
EVKNIDLPQEMQRAIAKQAEAERERRAKVIHAEGELQASEKLAQAAQVMVAQPMSLQLRYLQTLTEIAAEKNSTTIFPVP
IDLIKIFMDRMDAGRKSD

Specific function: Unknown

COG id: COG0330

COG function: function code O; Membrane protease subunits, stomatin/prohibitin homologs

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the band 7/mec-2 family [H]

Homologues:

Organism=Homo sapiens, GI38016911, Length=241, Percent_Identity=47.3029045643153, Blast_Score=218, Evalue=5e-57,
Organism=Homo sapiens, GI21686995, Length=244, Percent_Identity=46.3114754098361, Blast_Score=217, Evalue=7e-57,
Organism=Homo sapiens, GI221316744, Length=244, Percent_Identity=46.3114754098361, Blast_Score=217, Evalue=8e-57,
Organism=Homo sapiens, GI7657615, Length=244, Percent_Identity=32.7868852459016, Blast_Score=150, Evalue=9e-37,
Organism=Homo sapiens, GI7305503, Length=191, Percent_Identity=33.5078534031414, Blast_Score=129, Evalue=2e-30,
Organism=Homo sapiens, GI20149563, Length=163, Percent_Identity=33.7423312883436, Blast_Score=92, Evalue=4e-19,
Organism=Homo sapiens, GI38016907, Length=58, Percent_Identity=62.0689655172414, Blast_Score=77, Evalue=1e-14,
Organism=Escherichia coli, GI1786697, Length=194, Percent_Identity=36.5979381443299, Blast_Score=144, Evalue=7e-36,
Organism=Caenorhabditis elegans, GI71987612, Length=261, Percent_Identity=47.8927203065134, Blast_Score=223, Evalue=8e-59,
Organism=Caenorhabditis elegans, GI25153583, Length=261, Percent_Identity=47.8927203065134, Blast_Score=223, Evalue=1e-58,
Organism=Caenorhabditis elegans, GI71987621, Length=230, Percent_Identity=52.1739130434783, Blast_Score=221, Evalue=2e-58,
Organism=Caenorhabditis elegans, GI17569493, Length=239, Percent_Identity=46.8619246861925, Blast_Score=217, Evalue=4e-57,
Organism=Caenorhabditis elegans, GI193209764, Length=237, Percent_Identity=47.2573839662447, Blast_Score=217, Evalue=6e-57,
Organism=Caenorhabditis elegans, GI17569499, Length=247, Percent_Identity=48.582995951417, Blast_Score=216, Evalue=6e-57,
Organism=Caenorhabditis elegans, GI193210507, Length=243, Percent_Identity=48.1481481481481, Blast_Score=209, Evalue=1e-54,
Organism=Caenorhabditis elegans, GI17570161, Length=243, Percent_Identity=48.1481481481481, Blast_Score=209, Evalue=1e-54,
Organism=Caenorhabditis elegans, GI17570459, Length=245, Percent_Identity=45.7142857142857, Blast_Score=207, Evalue=3e-54,
Organism=Caenorhabditis elegans, GI17569497, Length=237, Percent_Identity=43.8818565400844, Blast_Score=205, Evalue=2e-53,
Organism=Caenorhabditis elegans, GI71989948, Length=231, Percent_Identity=45.021645021645, Blast_Score=194, Evalue=5e-50,
Organism=Caenorhabditis elegans, GI32566490, Length=211, Percent_Identity=48.8151658767773, Blast_Score=184, Evalue=5e-47,
Organism=Caenorhabditis elegans, GI71989955, Length=180, Percent_Identity=45.5555555555556, Blast_Score=146, Evalue=1e-35,
Organism=Caenorhabditis elegans, GI32564147, Length=175, Percent_Identity=34.2857142857143, Blast_Score=123, Evalue=8e-29,
Organism=Caenorhabditis elegans, GI71989963, Length=118, Percent_Identity=44.0677966101695, Blast_Score=108, Evalue=2e-24,
Organism=Caenorhabditis elegans, GI17542664, Length=166, Percent_Identity=28.3132530120482, Blast_Score=83, Evalue=1e-16,
Organism=Drosophila melanogaster, GI45556022, Length=246, Percent_Identity=47.9674796747967, Blast_Score=226, Evalue=9e-60,
Organism=Drosophila melanogaster, GI18860517, Length=249, Percent_Identity=46.5863453815261, Blast_Score=214, Evalue=4e-56,
Organism=Drosophila melanogaster, GI24657857, Length=233, Percent_Identity=49.7854077253219, Blast_Score=207, Evalue=5e-54,
Organism=Drosophila melanogaster, GI62484448, Length=233, Percent_Identity=49.7854077253219, Blast_Score=207, Evalue=5e-54,
Organism=Drosophila melanogaster, GI281365664, Length=250, Percent_Identity=47.6, Blast_Score=207, Evalue=7e-54,
Organism=Drosophila melanogaster, GI62484274, Length=233, Percent_Identity=49.7854077253219, Blast_Score=206, Evalue=8e-54,
Organism=Drosophila melanogaster, GI281361633, Length=242, Percent_Identity=40.495867768595, Blast_Score=198, Evalue=3e-51,
Organism=Drosophila melanogaster, GI281361631, Length=242, Percent_Identity=40.495867768595, Blast_Score=197, Evalue=4e-51,
Organism=Drosophila melanogaster, GI21356845, Length=240, Percent_Identity=38.3333333333333, Blast_Score=195, Evalue=3e-50,
Organism=Drosophila melanogaster, GI28573263, Length=248, Percent_Identity=38.7096774193548, Blast_Score=190, Evalue=7e-49,
Organism=Drosophila melanogaster, GI281361635, Length=185, Percent_Identity=40.5405405405405, Blast_Score=150, Evalue=7e-37,
Organism=Drosophila melanogaster, GI45550506, Length=184, Percent_Identity=34.2391304347826, Blast_Score=132, Evalue=3e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001107
- InterPro:   IPR018080
- InterPro:   IPR001972 [H]

Pfam domain/function: PF01145 Band_7 [H]

EC number: NA

Molecular weight: Translated: 29132; Mature: 29132

Theoretical pI: Translated: 7.68; Mature: 7.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNVFDLFPVLFVLVLIVAFLANAIRILPEYERGVLFRLGRVKKVRGPGIVLIIPGIDRLV
CCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHEECCCCEEEEECCHHHHH
RVSLRIVAMDVPSQDVITHDNVTVKVSAVIYFRVVDAVRAVVEMENYLYATSQLSQTTLR
HHHHHEEEEECCCCCCEECCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SVLGQVDLDELLANREKINRELQEILDRQTEPWGVKVSTVEVKNIDLPQEMQRAIAKQAE
HHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHH
AERERRAKVIHAEGELQASEKLAQAAQVMVAQPMSLQLRYLQTLTEIAAEKNSTTIFPVP
HHHHHHHHEEECCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCEEEECC
IDLIKIFMDRMDAGRKSD
HHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MNVFDLFPVLFVLVLIVAFLANAIRILPEYERGVLFRLGRVKKVRGPGIVLIIPGIDRLV
CCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHEECCCCEEEEECCHHHHH
RVSLRIVAMDVPSQDVITHDNVTVKVSAVIYFRVVDAVRAVVEMENYLYATSQLSQTTLR
HHHHHEEEEECCCCCCEECCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SVLGQVDLDELLANREKINRELQEILDRQTEPWGVKVSTVEVKNIDLPQEMQRAIAKQAE
HHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHH
AERERRAKVIHAEGELQASEKLAQAAQVMVAQPMSLQLRYLQTLTEIAAEKNSTTIFPVP
HHHHHHHHEEECCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCEEEECC
IDLIKIFMDRMDAGRKSD
HHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9389475 [H]