| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
Click here to switch to the map view.
The map label for this gene is ftn [H]
Identifier: 197118896
GI number: 197118896
Start: 2920245
End: 2920763
Strand: Reverse
Name: ftn [H]
Synonym: Gbem_2519
Alternate gene names: 197118896
Gene position: 2920763-2920245 (Counterclockwise)
Preceding gene: 197118897
Following gene: 197118894
Centisome position: 63.29
GC content: 55.11
Gene sequence:
>519_bases ATGCTTAGCAAGAAACTGTGCAACGCCTTGAACAAACAACTCAACAACGAACTCTACTCTGCCTATCTCTACCTCTCCAT GTCCTCGTATGCTGCCTCCATAGGGCTGAAGGGAAGCGCAAACTGGTTCATGGTGCAGTACCAGGAGGAGATGGTCCACG CCATGAAGTTCTACAACTACATAAATAGCCGCGGGGAGCATACCGAGCTTGCGGCCATAGCGGCGCCACCCACCAAGTTC AAGAACCTCCTGGATATGTTCGAGCAGACCCTGACGCACGAGCAGTTCATCACCTCGTCGATAAACGAGCTGACCGACCT GGCGCAAACCGAGAAGGATCACGCAACCGTGATCTTCCTGCAGTGGTTCGTCACCGAGCAGATCGAAGAGGAGGAAAACG ACAGGGATATTATCGGCAAGCTGAAGCTGATAGGGGACAACGGGCAGGGCCTGCTGATGCTGGACACGGAGCTGGCGGCA AGGGTATTCGTACCGCCTCCCACAACGGCTGCTCCCTGA
Upstream 100 bases:
>100_bases CTCTCTCGATGTCGTATACATATTTGAATCGGTGCTCTGAAGAGATATCATTGTTGTCAGTACTGACACTGTTTGAAATG CAATAAAAGGGGGATTGACC
Downstream 100 bases:
>100_bases AAGGAAGAGGGGAGGAGACCACAAAAAAGAAAGGGGGACAGGCTACTTTTTGAGATCAAAAAGTTGCCTGTCCCCTTTTG CTTTCTGTTTGGTTACAGCT
Product: nonheme ferritin
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 172; Mature: 172
Protein sequence:
>172_residues MLSKKLCNALNKQLNNELYSAYLYLSMSSYAASIGLKGSANWFMVQYQEEMVHAMKFYNYINSRGEHTELAAIAAPPTKF KNLLDMFEQTLTHEQFITSSINELTDLAQTEKDHATVIFLQWFVTEQIEEEENDRDIIGKLKLIGDNGQGLLMLDTELAA RVFVPPPTTAAP
Sequences:
>Translated_172_residues MLSKKLCNALNKQLNNELYSAYLYLSMSSYAASIGLKGSANWFMVQYQEEMVHAMKFYNYINSRGEHTELAAIAAPPTKF KNLLDMFEQTLTHEQFITSSINELTDLAQTEKDHATVIFLQWFVTEQIEEEENDRDIIGKLKLIGDNGQGLLMLDTELAA RVFVPPPTTAAP >Mature_172_residues MLSKKLCNALNKQLNNELYSAYLYLSMSSYAASIGLKGSANWFMVQYQEEMVHAMKFYNYINSRGEHTELAAIAAPPTKF KNLLDMFEQTLTHEQFITSSINELTDLAQTEKDHATVIFLQWFVTEQIEEEENDRDIIGKLKLIGDNGQGLLMLDTELAA RVFVPPPTTAAP
Specific function: Iron-storage protein [H]
COG id: COG1528
COG function: function code P; Ferritin-like protein
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ferritin-like diiron domain [H]
Homologues:
Organism=Escherichia coli, GI1788216, Length=159, Percent_Identity=38.9937106918239, Blast_Score=123, Evalue=7e-30, Organism=Escherichia coli, GI1788212, Length=118, Percent_Identity=31.3559322033898, Blast_Score=69, Evalue=1e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR009040 - InterPro: IPR012347 - InterPro: IPR009078 - InterPro: IPR008331 - InterPro: IPR001519 [H]
Pfam domain/function: PF00210 Ferritin [H]
EC number: =1.16.3.1 [H]
Molecular weight: Translated: 19487; Mature: 19487
Theoretical pI: Translated: 4.58; Mature: 4.58
Prosite motif: PS50905 FERRITIN_LIKE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 4.1 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 4.1 %Met (Mature Protein) 4.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLSKKLCNALNKQLNNELYSAYLYLSMSSYAASIGLKGSANWFMVQYQEEMVHAMKFYNY CCHHHHHHHHHHHHHHHHHHHHHEEEHHHHHHHCCCCCCCCEEEEEEHHHHHHHHHHHHH INSRGEHTELAAIAAPPTKFKNLLDMFEQTLTHEQFITSSINELTDLAQTEKDHATVIFL HHCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEH QWFVTEQIEEEENDRDIIGKLKLIGDNGQGLLMLDTELAARVFVPPPTTAAP HHHHHHHHHHCCCCHHEEEEEEEECCCCCEEEEEECCCCEEEECCCCCCCCC >Mature Secondary Structure MLSKKLCNALNKQLNNELYSAYLYLSMSSYAASIGLKGSANWFMVQYQEEMVHAMKFYNY CCHHHHHHHHHHHHHHHHHHHHHEEEHHHHHHHCCCCCCCCEEEEEEHHHHHHHHHHHHH INSRGEHTELAAIAAPPTKFKNLLDMFEQTLTHEQFITSSINELTDLAQTEKDHATVIFL HHCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEH QWFVTEQIEEEENDRDIIGKLKLIGDNGQGLLMLDTELAARVFVPPPTTAAP HHHHHHHHHHCCCCHHEEEEEEEECCCCCEEEEEECCCCEEEECCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8809765; 10688204 [H]