Definition Geobacter bemidjiensis Bem chromosome, complete genome.
Accession NC_011146
Length 4,615,150

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The map label for this gene is 197118852

Identifier: 197118852

GI number: 197118852

Start: 2868327

End: 2869265

Strand: Direct

Name: 197118852

Synonym: Gbem_2475

Alternate gene names: NA

Gene position: 2868327-2869265 (Clockwise)

Preceding gene: 197118851

Following gene: 197118853

Centisome position: 62.15

GC content: 55.59

Gene sequence:

>939_bases
ATGAAGAATATCGCTGTCAAAGCCCTTTCTGCTGCAATGATTGTCACACTCACCGGCTGCGCCAGCATCGTCAGTAAGTC
GAGCTGGCCGGTTAGTATTCAATCCAACCCCGCAGGCGCTAAATGCGTGGTCACAAACAACAAGGGTATAGCGATTCAAT
CCGGCGAGACTCCTATGATTGTGACAGTAGAGTCAGGAAACGGATTCTTCTCGAAGGCCAAATACTCTATCTCGTGCAAT
AAGGATGGATTTGATCCAGGGCGCAGCGAGCTTTCCGCGCACATGAACGGTTGGTACTGGGGCAACATTGTGTTCGGGGG
GGTGATAGGGCTGCTGATCGTCGACCCCGCCACGGGCGCGATGTGGAAGATGGACGACACCCTCATGGTCCCACTTTCTC
CGACCGTTGTGGCAAAGGCCCCGGCTCCTGCCGCAGCAGGCGCCAAAGAACCTGAAGTCAAGATCGCCGCAGCGGTTGAC
GCCAACGCTCCCGCACTCAGCGTCGACAAGAAGCTGCACCTGGCCAAAAACGACACCATCGCCGTCCTGCCCTTCACCAT
CCACGCCGCCCAAAACAAGTACGACCATATGAGCCAAGGTTTCTCCGACGATCTCACCTGCTACCTCATGAAAAGCGAGG
ACATCAAGATCATCGACAGGAACACGGTCGACAAGGCTCTCAGTGAGATCAAGTCCAGCAACAGCGGGATCTTGGACACT
ACCACCGCGCAAAACATAGGGAAGGCGATCGGCGCAAAGTTCGTCATTCTCGGCAACGTGGAGGTCATCGACAGCGAGGC
CAACGTCATCTGCCGCGTGATAAAAGTGGAGACCTGCGAGAACGTCCTCTCCGAGAAAGTGACGGGGAACGCCGCCAACA
TCCTGCAGTTGAGAGATCAACTGGGACAAAAGATGAACCAACGGCTGGTCACGCTGTAG

Upstream 100 bases:

>100_bases
TTTCCCCCTTTTTTTGTTCCGCCAACGTTGACTAAAATTAACTCTTACTCTATATTGCTCCGATTCGTCGCCTGCCCAAA
TCTCTCCCGAAGGAGCATCA

Downstream 100 bases:

>100_bases
GCAAAGAGTCGCAGTAACGACAGGCGGGACGATAGATGAAGATAATCGCGATCAACGGCAGCCCGAGGAAAAAGTGGAAC
ACGGCAACCCTGCTGGAGAA

Product: lipoprotein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 312; Mature: 312

Protein sequence:

>312_residues
MKNIAVKALSAAMIVTLTGCASIVSKSSWPVSIQSNPAGAKCVVTNNKGIAIQSGETPMIVTVESGNGFFSKAKYSISCN
KDGFDPGRSELSAHMNGWYWGNIVFGGVIGLLIVDPATGAMWKMDDTLMVPLSPTVVAKAPAPAAAGAKEPEVKIAAAVD
ANAPALSVDKKLHLAKNDTIAVLPFTIHAAQNKYDHMSQGFSDDLTCYLMKSEDIKIIDRNTVDKALSEIKSSNSGILDT
TTAQNIGKAIGAKFVILGNVEVIDSEANVICRVIKVETCENVLSEKVTGNAANILQLRDQLGQKMNQRLVTL

Sequences:

>Translated_312_residues
MKNIAVKALSAAMIVTLTGCASIVSKSSWPVSIQSNPAGAKCVVTNNKGIAIQSGETPMIVTVESGNGFFSKAKYSISCN
KDGFDPGRSELSAHMNGWYWGNIVFGGVIGLLIVDPATGAMWKMDDTLMVPLSPTVVAKAPAPAAAGAKEPEVKIAAAVD
ANAPALSVDKKLHLAKNDTIAVLPFTIHAAQNKYDHMSQGFSDDLTCYLMKSEDIKIIDRNTVDKALSEIKSSNSGILDT
TTAQNIGKAIGAKFVILGNVEVIDSEANVICRVIKVETCENVLSEKVTGNAANILQLRDQLGQKMNQRLVTL
>Mature_312_residues
MKNIAVKALSAAMIVTLTGCASIVSKSSWPVSIQSNPAGAKCVVTNNKGIAIQSGETPMIVTVESGNGFFSKAKYSISCN
KDGFDPGRSELSAHMNGWYWGNIVFGGVIGLLIVDPATGAMWKMDDTLMVPLSPTVVAKAPAPAAAGAKEPEVKIAAAVD
ANAPALSVDKKLHLAKNDTIAVLPFTIHAAQNKYDHMSQGFSDDLTCYLMKSEDIKIIDRNTVDKALSEIKSSNSGILDT
TTAQNIGKAIGAKFVILGNVEVIDSEANVICRVIKVETCENVLSEKVTGNAANILQLRDQLGQKMNQRLVTL

Specific function: Unknown

COG id: COG5616

COG function: function code S; Predicted integral membrane protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 33035; Mature: 33035

Theoretical pI: Translated: 7.81; Mature: 7.81

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNIAVKALSAAMIVTLTGCASIVSKSSWPVSIQSNPAGAKCVVTNNKGIAIQSGETPMI
CCCHHHHHHHHEEEEEEHHHHHHHCCCCCCEEEECCCCCCEEEEECCCEEEEECCCCCEE
VTVESGNGFFSKAKYSISCNKDGFDPGRSELSAHMNGWYWGNIVFGGVIGLLIVDPATGA
EEEECCCCEEEEEEEEEECCCCCCCCCHHHHHHHCCCEEEECCHHHCEEEEEEECCCCCC
MWKMDDTLMVPLSPTVVAKAPAPAAAGAKEPEVKIAAAVDANAPALSVDKKLHLAKNDTI
EEECCCEEEEECCCCEEEECCCCCCCCCCCCCEEEEEEECCCCCEEECCCEEEEECCCEE
AVLPFTIHAAQNKYDHMSQGFSDDLTCYLMKSEDIKIIDRNTVDKALSEIKSSNSGILDT
EEEEEEEEECCCCHHHHHCCCCCCEEEEEEECCCEEEEECCHHHHHHHHHHCCCCCEEEC
TTAQNIGKAIGAKFVILGNVEVIDSEANVICRVIKVETCENVLSEKVTGNAANILQLRDQ
CHHHHHHHHHCCEEEEEECEEEEECCCCEEEEEEEHHHHHHHHHHHCCCCHHHHHHHHHH
LGQKMNQRLVTL
HHHHHHHHCCCC
>Mature Secondary Structure
MKNIAVKALSAAMIVTLTGCASIVSKSSWPVSIQSNPAGAKCVVTNNKGIAIQSGETPMI
CCCHHHHHHHHEEEEEEHHHHHHHCCCCCCEEEECCCCCCEEEEECCCEEEEECCCCCEE
VTVESGNGFFSKAKYSISCNKDGFDPGRSELSAHMNGWYWGNIVFGGVIGLLIVDPATGA
EEEECCCCEEEEEEEEEECCCCCCCCCHHHHHHHCCCEEEECCHHHCEEEEEEECCCCCC
MWKMDDTLMVPLSPTVVAKAPAPAAAGAKEPEVKIAAAVDANAPALSVDKKLHLAKNDTI
EEECCCEEEEECCCCEEEECCCCCCCCCCCCCEEEEEEECCCCCEEECCCEEEEECCCEE
AVLPFTIHAAQNKYDHMSQGFSDDLTCYLMKSEDIKIIDRNTVDKALSEIKSSNSGILDT
EEEEEEEEECCCCHHHHHCCCCCCEEEEEEECCCEEEEECCHHHHHHHHHHCCCCCEEEC
TTAQNIGKAIGAKFVILGNVEVIDSEANVICRVIKVETCENVLSEKVTGNAANILQLRDQ
CHHHHHHHHHCCEEEEEECEEEEECCCCEEEEEEEHHHHHHHHHHHCCCCHHHHHHHHHH
LGQKMNQRLVTL
HHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA