| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
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The map label for this gene is 197118851
Identifier: 197118851
GI number: 197118851
Start: 2867500
End: 2868174
Strand: Direct
Name: 197118851
Synonym: Gbem_2474
Alternate gene names: NA
Gene position: 2867500-2868174 (Clockwise)
Preceding gene: 308535304
Following gene: 197118852
Centisome position: 62.13
GC content: 49.78
Gene sequence:
>675_bases ATGCCGAGGATAGCCAGAGGTCTGAATGACGGCTTCATCTACCATGTGCTTAACCGTGGCAACAGCAGGGAGGAAGTCTT TCATAAACAGGGAGACTACTACTCCTTCGTAAAGCTGCTAACGGAATCAATGGAACAATTCGATGTGAGGATCTTTGCAT ACTGCCTCATGCCAAACCACTTTCACATATTGGTAGAACCGGAAAAGGGTGAGGCATTGAGCAAGTTCATGCAATGGCTC ACCACCTGCCATGTCAGACGGTATCATCAACACTACGGAACAAGCGGCCACGTATGGCAAGACAGGTTCAAAAGCTTTAT CGTACAGAACGATGTGCACCTACTGACAGTTGCCCGCTATATTGAGGGAAACCCCGTTCGCGCGGGGTTGGTCAAATCAG CAAAAGATTGGCGGTGGTCATCACACCGGGACAGGCTAAAAGGTGCCGGAAACGGAACAATAAGCGATCTTCCTATAGCG CTGCCCGATGCGTGGTCTAGCTACACAGATTTACCGCTGACAAGCATTGAGCTAGAAAAACTCCGTAAAAGCGTGGCGAA GCGTGCTCCGTTCGGCGAGGAGGAATGGGTGCACAAAACCAGTGAGCAGCATGGGCTGAGTTCGACCCTCAAAGGGCAGG GAAGACCTAAAAAAGTAATGAAAATACAGTCTTAG
Upstream 100 bases:
>100_bases GACTTTAAAAGGGGACAGGCTACTTTTTCTTTTGAAAAAGTAGCCTGTCCCCCTTTCCATTTCGATGGCATCACCGGGGA CGTCCACTTGTGGAGGTACT
Downstream 100 bases:
>100_bases ACAAAATACTCACAAAGGGGGACAGGCTACTTTTTGAAATCAAAAAGTAGCCTTTCCCCCTTTTTTTGTTCCGCCAACGT TGACTAAAATTAACTCTTAC
Product: transposase
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 224; Mature: 223
Protein sequence:
>224_residues MPRIARGLNDGFIYHVLNRGNSREEVFHKQGDYYSFVKLLTESMEQFDVRIFAYCLMPNHFHILVEPEKGEALSKFMQWL TTCHVRRYHQHYGTSGHVWQDRFKSFIVQNDVHLLTVARYIEGNPVRAGLVKSAKDWRWSSHRDRLKGAGNGTISDLPIA LPDAWSSYTDLPLTSIELEKLRKSVAKRAPFGEEEWVHKTSEQHGLSSTLKGQGRPKKVMKIQS
Sequences:
>Translated_224_residues MPRIARGLNDGFIYHVLNRGNSREEVFHKQGDYYSFVKLLTESMEQFDVRIFAYCLMPNHFHILVEPEKGEALSKFMQWL TTCHVRRYHQHYGTSGHVWQDRFKSFIVQNDVHLLTVARYIEGNPVRAGLVKSAKDWRWSSHRDRLKGAGNGTISDLPIA LPDAWSSYTDLPLTSIELEKLRKSVAKRAPFGEEEWVHKTSEQHGLSSTLKGQGRPKKVMKIQS >Mature_223_residues PRIARGLNDGFIYHVLNRGNSREEVFHKQGDYYSFVKLLTESMEQFDVRIFAYCLMPNHFHILVEPEKGEALSKFMQWLT TCHVRRYHQHYGTSGHVWQDRFKSFIVQNDVHLLTVARYIEGNPVRAGLVKSAKDWRWSSHRDRLKGAGNGTISDLPIAL PDAWSSYTDLPLTSIELEKLRKSVAKRAPFGEEEWVHKTSEQHGLSSTLKGQGRPKKVMKIQS
Specific function: Unknown
COG id: COG1943
COG function: function code L; Transposase and inactivated derivatives
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 25910; Mature: 25779
Theoretical pI: Translated: 9.92; Mature: 9.92
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPRIARGLNDGFIYHVLNRGNSREEVFHKQGDYYSFVKLLTESMEQFDVRIFAYCLMPNH CCCHHCCCCCCCEEEEECCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHEEECCCC FHILVEPEKGEALSKFMQWLTTCHVRRYHQHYGTSGHVWQDRFKSFIVQNDVHLLTVARY EEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHH IEGNPVRAGLVKSAKDWRWSSHRDRLKGAGNGTISDLPIALPDAWSSYTDLPLTSIELEK HCCCCCHHHHHHCCCCCCCCCHHHHHCCCCCCCCCCCCEECCCCCCCCCCCCCHHHHHHH LRKSVAKRAPFGEEEWVHKTSEQHGLSSTLKGQGRPKKVMKIQS HHHHHHHHCCCCCHHHHHHHHHHCCCHHHHCCCCCCHHHHEECC >Mature Secondary Structure PRIARGLNDGFIYHVLNRGNSREEVFHKQGDYYSFVKLLTESMEQFDVRIFAYCLMPNH CCHHCCCCCCCEEEEECCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHEEECCCC FHILVEPEKGEALSKFMQWLTTCHVRRYHQHYGTSGHVWQDRFKSFIVQNDVHLLTVARY EEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHH IEGNPVRAGLVKSAKDWRWSSHRDRLKGAGNGTISDLPIALPDAWSSYTDLPLTSIELEK HCCCCCHHHHHHCCCCCCCCCHHHHHCCCCCCCCCCCCEECCCCCCCCCCCCCHHHHHHH LRKSVAKRAPFGEEEWVHKTSEQHGLSSTLKGQGRPKKVMKIQS HHHHHHHHCCCCCHHHHHHHHHHCCCHHHHCCCCCCHHHHEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA