| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
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The map label for this gene is 197118532
Identifier: 197118532
GI number: 197118532
Start: 2503066
End: 2503803
Strand: Direct
Name: 197118532
Synonym: Gbem_2150
Alternate gene names: NA
Gene position: 2503066-2503803 (Clockwise)
Preceding gene: 197118531
Following gene: 197118535
Centisome position: 54.24
GC content: 62.47
Gene sequence:
>738_bases GTGACCTTGCCGCTTCTGACATTGTTATTGGCTGCGGTGCTCGTGGTCGCCGCCCTTTATTCCAGCGTAGGGCACGGCGG CGCTTCGGGCTACATCGCAACCCTGGCCCTTTTCAGCGTTGCGCCTGCTGCCTTCAAGCCGACCGCGCTGGTTCTGAACC TTGTGGTAGCCGGCGTGGCCACCTGCATATTCTTCCGCGCCGGCCACTTCTCCTGGCGGCTATTCTGGCCCTTCGCCGTC ACCTCGATCCCTTGCAGCTTCATCGGCGGCTACTTGAGCCTCCCGGACCACATCTACAAGCCGTTGGTGGGGCTCGTACT GGTTGCTTCCGCACTCCGCCTCAGCTTCCACAGCGAAAGGAAGACCGAGCCGGTCCGACACCCCTCCATGCCGGTCGCGT TTTTGGCCGGCGCGCTGCTGGGCCTTCTCTCCGGTCTTACCGGGGTGGGGGGAGGAATTTTTCTCAGCCCGTTGCTCCTG CTGCTCAATTGGGGGAAAGTCAGGGAAGTGTCCGCGGTCGCGGCGCTGTTCATCCTGGTGAACTCCGCGGCAGGGCTCCT CGGGCATCTCAGCAGCCTGCAGCAGATCCCCTCTTTCGTTCCGCCGCTCGCGTTCGCAGCGCTTTCCGGTGGAGTAATAG GGTCGTATCTAGGGAGCGCAAGGCTCCCGGTGGCGGGAATAGTGAAGGCGTTGTCTTTGGTGCTAATGGTGGCGGGGTTC AAAATGCTGCTGGTGTAG
Upstream 100 bases:
>100_bases GGTCATGCTCCTGGACCGGTGGTTTGAACAGGGGGGGCTCGAAGATGACGGCGTTGCCTGAAGTTCTCGACCTGGAACTC TATCCCGAGAGGGTGCGCCT
Downstream 100 bases:
>100_bases GCTTTGGTAGGCGAAGCGATTCTTTGAACGCATGGCCCCAGCCCGCCGCTGGAACGGGGCGAAGATCTTATCCGCATCGG CCATGTCGAACCCCATCCCG
Product: membrane protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 245; Mature: 244
Protein sequence:
>245_residues MTLPLLTLLLAAVLVVAALYSSVGHGGASGYIATLALFSVAPAAFKPTALVLNLVVAGVATCIFFRAGHFSWRLFWPFAV TSIPCSFIGGYLSLPDHIYKPLVGLVLVASALRLSFHSERKTEPVRHPSMPVAFLAGALLGLLSGLTGVGGGIFLSPLLL LLNWGKVREVSAVAALFILVNSAAGLLGHLSSLQQIPSFVPPLAFAALSGGVIGSYLGSARLPVAGIVKALSLVLMVAGF KMLLV
Sequences:
>Translated_245_residues MTLPLLTLLLAAVLVVAALYSSVGHGGASGYIATLALFSVAPAAFKPTALVLNLVVAGVATCIFFRAGHFSWRLFWPFAV TSIPCSFIGGYLSLPDHIYKPLVGLVLVASALRLSFHSERKTEPVRHPSMPVAFLAGALLGLLSGLTGVGGGIFLSPLLL LLNWGKVREVSAVAALFILVNSAAGLLGHLSSLQQIPSFVPPLAFAALSGGVIGSYLGSARLPVAGIVKALSLVLMVAGF KMLLV >Mature_244_residues TLPLLTLLLAAVLVVAALYSSVGHGGASGYIATLALFSVAPAAFKPTALVLNLVVAGVATCIFFRAGHFSWRLFWPFAVT SIPCSFIGGYLSLPDHIYKPLVGLVLVASALRLSFHSERKTEPVRHPSMPVAFLAGALLGLLSGLTGVGGGIFLSPLLLL LNWGKVREVSAVAALFILVNSAAGLLGHLSSLQQIPSFVPPLAFAALSGGVIGSYLGSARLPVAGIVKALSLVLMVAGFK MLLV
Specific function: Unknown
COG id: COG0730
COG function: function code R; Predicted permeases
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0721 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002781 [H]
Pfam domain/function: PF01925 DUF81 [H]
EC number: NA
Molecular weight: Translated: 25327; Mature: 25196
Theoretical pI: Translated: 10.57; Mature: 10.57
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTLPLLTLLLAAVLVVAALYSSVGHGGASGYIATLALFSVAPAAFKPTALVLNLVVAGVA CCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH TCIFFRAGHFSWRLFWPFAVTSIPCSFIGGYLSLPDHIYKPLVGLVLVASALRLSFHSER HHHHHHCCCCEEEEEHHHHHHHCCHHHHCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH KTEPVRHPSMPVAFLAGALLGLLSGLTGVGGGIFLSPLLLLLNWGKVREVSAVAALFILV CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH NSAAGLLGHLSSLQQIPSFVPPLAFAALSGGVIGSYLGSARLPVAGIVKALSLVLMVAGF HHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHH KMLLV HHHCC >Mature Secondary Structure TLPLLTLLLAAVLVVAALYSSVGHGGASGYIATLALFSVAPAAFKPTALVLNLVVAGVA CHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH TCIFFRAGHFSWRLFWPFAVTSIPCSFIGGYLSLPDHIYKPLVGLVLVASALRLSFHSER HHHHHHCCCCEEEEEHHHHHHHCCHHHHCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH KTEPVRHPSMPVAFLAGALLGLLSGLTGVGGGIFLSPLLLLLNWGKVREVSAVAALFILV CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH NSAAGLLGHLSSLQQIPSFVPPLAFAALSGGVIGSYLGSARLPVAGIVKALSLVLMVAGF HHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHH KMLLV HHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 9163424 [H]