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The map label for this gene is cydB-2 [H]

Identifier: 197118399

GI number: 197118399

Start: 2322156

End: 2323199

Strand: Direct

Name: cydB-2 [H]

Synonym: Gbem_2017

Alternate gene names: 197118399

Gene position: 2322156-2323199 (Clockwise)

Preceding gene: 197118398

Following gene: 197118400

Centisome position: 50.32

GC content: 63.12

Gene sequence:

>1044_bases
ATGGCTGATCCGGTAATTCTCGCTGCCATAGTCCTCGTTGCCGGCCTTCTCATGTACGCGCTCTTCGCCGGTGCCGACTT
CGGCGGAGGCATCTGGACCGCTCTCGCTTTCGGGCCGCGCGCGCGGGAGCAGAGGGAAGCGCTCTTCAACGCCATCGGCC
CGGTGTGGGAAACGAACCACGTATGGCTCATCTTCGTGATTGTCACCCTCTTCACAGCCTTTCCCGCCGGTTTCGGCAAC
CTCTTCGTCGTGCTGATGACCCCTTTGGTGTTGGCCCTGGTTGGGATCAACTTCAGGGGCGCTGCCTTTGCCTTCCGCCA
CTTCGGCAGGGAGTCGAAGAAAGAGACCCCAGTCAGCGCCCGCGTCTTCGAGATCGCCAGCGTGCTCACGCCCTTCACGC
TGGGGCTCGCGGTATCCGCCACCGCTGCCGGGAGGATCGTCATCGCCGGGCACATGCCGACCGAACACGTTTCCGCCTGG
CTCAACCCCTTCACCCTATTGGGCGGGGTGGTCGGCATGGCGATCTGCGCCTACTTGGCGCCGGTTTACATGACGGTGCG
CGTCACGGGGAGCCTGCAGGAGGACTTCAGGAAGGAGTCACTGATTGCCGGGTTGGCCCTGGGCATTCTCACCTCGCTGA
TGATACCGCTGGCGCACTACCAGGCGCCGCTTTTCGCCGAAAGGCTGTTCAACTCGTGGCCCATGCTGTTCGTGATGTTG
GCGATACTTACCGGCGTGATCACCGAGTCTTTGCTCTGGCTGCGGCGCTACTTCTGGGCGCAGCTTATGGCCGGCGCGAC
CATCGTCTTCACCATGGCTGGCTTCATTGCGGCGCTCAATCCCGATATCCTGATCGGGCAATTGACCCTGCGTGCCGCCG
CGGCGCCGCATACGACCCTGGTCGCATTTCTAGCCGTTCTGCCGATTGGGGCTTTGATCCTGGTTCCTTCGCTGGTTTAC
CTGTACTGGACTTTCAGGGGGGAGCCGTCCACCGATATGCCGCCGGCTGGGAAGGGTGGGGGACAGGGCGCGCCCCCTCC
CTGA

Upstream 100 bases:

>100_bases
TTCCTCATGGTCTACCTGGCGCTTTCGGTGGGGATACTGAGGCTTTTGCTCCGTCCGCAGGGTAGGGGGGAGGAGGGGGA
AGAAGGAGAGGAGGTGCTCC

Downstream 100 bases:

>100_bases
CCCTCCCCCTCCGGGGGCGGGGACTTGGCTGAGCCCGGCTTTCTCTGAAGCAGCGGCCTTGCGGAAAAGGACTTTCAATC
AGGGGGAAAATGGAGTATTC

Product: cytochrome bd ubiquinol oxidase subunit II

Products: NA

Alternate protein names: Cytochrome d ubiquinol oxidase subunit II [H]

Number of amino acids: Translated: 347; Mature: 346

Protein sequence:

>347_residues
MADPVILAAIVLVAGLLMYALFAGADFGGGIWTALAFGPRAREQREALFNAIGPVWETNHVWLIFVIVTLFTAFPAGFGN
LFVVLMTPLVLALVGINFRGAAFAFRHFGRESKKETPVSARVFEIASVLTPFTLGLAVSATAAGRIVIAGHMPTEHVSAW
LNPFTLLGGVVGMAICAYLAPVYMTVRVTGSLQEDFRKESLIAGLALGILTSLMIPLAHYQAPLFAERLFNSWPMLFVML
AILTGVITESLLWLRRYFWAQLMAGATIVFTMAGFIAALNPDILIGQLTLRAAAAPHTTLVAFLAVLPIGALILVPSLVY
LYWTFRGEPSTDMPPAGKGGGQGAPPP

Sequences:

>Translated_347_residues
MADPVILAAIVLVAGLLMYALFAGADFGGGIWTALAFGPRAREQREALFNAIGPVWETNHVWLIFVIVTLFTAFPAGFGN
LFVVLMTPLVLALVGINFRGAAFAFRHFGRESKKETPVSARVFEIASVLTPFTLGLAVSATAAGRIVIAGHMPTEHVSAW
LNPFTLLGGVVGMAICAYLAPVYMTVRVTGSLQEDFRKESLIAGLALGILTSLMIPLAHYQAPLFAERLFNSWPMLFVML
AILTGVITESLLWLRRYFWAQLMAGATIVFTMAGFIAALNPDILIGQLTLRAAAAPHTTLVAFLAVLPIGALILVPSLVY
LYWTFRGEPSTDMPPAGKGGGQGAPPP
>Mature_346_residues
ADPVILAAIVLVAGLLMYALFAGADFGGGIWTALAFGPRAREQREALFNAIGPVWETNHVWLIFVIVTLFTAFPAGFGNL
FVVLMTPLVLALVGINFRGAAFAFRHFGRESKKETPVSARVFEIASVLTPFTLGLAVSATAAGRIVIAGHMPTEHVSAWL
NPFTLLGGVVGMAICAYLAPVYMTVRVTGSLQEDFRKESLIAGLALGILTSLMIPLAHYQAPLFAERLFNSWPMLFVMLA
ILTGVITESLLWLRRYFWAQLMAGATIVFTMAGFIAALNPDILIGQLTLRAAAAPHTTLVAFLAVLPIGALILVPSLVYL
YWTFRGEPSTDMPPAGKGGGQGAPPP

Specific function: Cytochrome D Terminal Oxidase Complex Is The Component Of The Aerobic Respiratory Chain Of E.Coli That Predominates When Cells Are Grown At Low Aeration. [C]

COG id: COG1294

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 2

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786954, Length=205, Percent_Identity=28.2926829268293, Blast_Score=66, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003317 [H]

Pfam domain/function: PF02322 Cyto_ox_2 [H]

EC number: 1.10.3.-

Molecular weight: Translated: 37158; Mature: 37026

Theoretical pI: Translated: 8.99; Mature: 8.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADPVILAAIVLVAGLLMYALFAGADFGGGIWTALAFGPRAREQREALFNAIGPVWETNH
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCC
VWLIFVIVTLFTAFPAGFGNLFVVLMTPLVLALVGINFRGAAFAFRHFGRESKKETPVSA
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCHHH
RVFEIASVLTPFTLGLAVSATAAGRIVIAGHMPTEHVSAWLNPFTLLGGVVGMAICAYLA
HHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
PVYMTVRVTGSLQEDFRKESLIAGLALGILTSLMIPLAHYQAPLFAERLFNSWPMLFVML
HHHHHEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHH
AILTGVITESLLWLRRYFWAQLMAGATIVFTMAGFIAALNPDILIGQLTLRAAAAPHTTL
HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCEEHHHHHHHHCCCHHHH
VAFLAVLPIGALILVPSLVYLYWTFRGEPSTDMPPAGKGGGQGAPPP
HHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
ADPVILAAIVLVAGLLMYALFAGADFGGGIWTALAFGPRAREQREALFNAIGPVWETNH
CCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCC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HHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969509; 9384377 [H]