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The map label for this gene is cydA-2 [H]

Identifier: 197118398

GI number: 197118398

Start: 2320838

End: 2322163

Strand: Direct

Name: cydA-2 [H]

Synonym: Gbem_2016

Alternate gene names: 197118398

Gene position: 2320838-2322163 (Clockwise)

Preceding gene: 197118397

Following gene: 197118399

Centisome position: 50.29

GC content: 60.71

Gene sequence:

>1326_bases
ATGGACGATTTGCTTGCCGCGCGTGCCCTTATGGGTGTTTCGCTTGCCTTTCACATAGTCTACGCGACTATAGGCATCGG
TCTTCCGCTGTTGTTGATGCTTGCGGAAGGGTTGGCGCTCAAAACCGGAGATGAAGAGTGGCACGAGGTCGCACGGCGCT
GGATCAGGCCGGCTGCGGTACTCTTCGCCATCGGCGCCGTCTCTGGAACGATCCTCTCATTCGAGCTCGGACTCCTTTGG
CCTAAGTTCATGGTCTTTGCCGGGCCTATGATAGGCCTTGCCTTCTCGATGGAAGGATTCGCCTTTTTCACCGAGGCCAT
TTTCCTCGCCCTTTACAGCTACGGCGAGCAGCGCTTGTCCCGCCGCGCCCAGTTCTTCTGTACCGTTCCCATGGTCGTAG
CCTCCGCTATTTCGGCGGTCTTCGTCATCAGCGCCAACGGCTGGATGAACACACCTTCGGGCTTCCGAATGGTCAATGGC
GTTGCTTCCGACATCCACCCGCTGGTTGCCTTTGCCAATCAGGCCTGGCCGCACCAGGCAGTACATGGAACCTTCGCCGC
ATACGTAGCCACAGGTTTCGCGATGGCGGGGTTTTACGCAGCGGATCTTTTGCGCGGCAGGAAGACGACGCAGGTGAAGA
AGGCGCTGACCCTATCCCTCGCGGTCGGCACCTTGGCCTTGCCGCTGATGCTTATGAGCGGGGACTGGGCGGCGGAAGCG
CTCGCTGAGCATCAGAAGGCGAAACTCGCGGCGGCCGAGGCGCATTTCAAGACAATGGCGGCGGCGCCTCTTGTCATTGG
CGGCTGGCCGGACCCAGAGACCGGTACCGTCCGCTACGCGATAAAGATCCCCAAGCTTCTCAGCTACCTTGCCAACGGCG
ACGCCAATTCGGTGGTGCAGGGGCTGGACGCTTTCCCTCTAGGAAGCACTCCCGACCCGCGCATCGTGCACCCCTTCTTC
GATCTCATGGTGGGCTCTTCCTTCGTCATGGCCGCAGCTGCCGCCTGGTTCTGGTGGCTTCGCTGGCGCGAAAAGGAAGT
GACGCTGAAACGGGGCGCATTGATCCTGGTCCTCATCGCGGCCCCGTTCGGCATGATCGCTTTGGAGAGCGGTTGGATGG
TTACCGAGTTCGGCAGGCAACCGTGGATCATCCAAGGCTATCTCCGTACCTCAGAGGCCGTGACGCCCAACGGCGGTCTG
CTGCTGATCTTCGCCACTTTCCTCATGGTCTACCTGGCGCTTTCGGTGGGGATACTGAGGCTTTTGCTCCGTCCGCAGGG
TAGGGGGGAGGAGGGGGAAGAAGGAGAGGAGGTGCTCCATGGCTGA

Upstream 100 bases:

>100_bases
TCACTGAATAACTATCGGCTTCGCCTTGACAAACCGCGCTGTATCAGGAAACTTTTAAAGTTTTTTAACTTGTCCGTTCC
TGTCACAGCGAGGCCTATTC

Downstream 100 bases:

>100_bases
TCCGGTAATTCTCGCTGCCATAGTCCTCGTTGCCGGCCTTCTCATGTACGCGCTCTTCGCCGGTGCCGACTTCGGCGGAG
GCATCTGGACCGCTCTCGCT

Product: cytochrome bd ubiquinol oxidase subunit I

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 441; Mature: 441

Protein sequence:

>441_residues
MDDLLAARALMGVSLAFHIVYATIGIGLPLLLMLAEGLALKTGDEEWHEVARRWIRPAAVLFAIGAVSGTILSFELGLLW
PKFMVFAGPMIGLAFSMEGFAFFTEAIFLALYSYGEQRLSRRAQFFCTVPMVVASAISAVFVISANGWMNTPSGFRMVNG
VASDIHPLVAFANQAWPHQAVHGTFAAYVATGFAMAGFYAADLLRGRKTTQVKKALTLSLAVGTLALPLMLMSGDWAAEA
LAEHQKAKLAAAEAHFKTMAAAPLVIGGWPDPETGTVRYAIKIPKLLSYLANGDANSVVQGLDAFPLGSTPDPRIVHPFF
DLMVGSSFVMAAAAAWFWWLRWREKEVTLKRGALILVLIAAPFGMIALESGWMVTEFGRQPWIIQGYLRTSEAVTPNGGL
LLIFATFLMVYLALSVGILRLLLRPQGRGEEGEEGEEVLHG

Sequences:

>Translated_441_residues
MDDLLAARALMGVSLAFHIVYATIGIGLPLLLMLAEGLALKTGDEEWHEVARRWIRPAAVLFAIGAVSGTILSFELGLLW
PKFMVFAGPMIGLAFSMEGFAFFTEAIFLALYSYGEQRLSRRAQFFCTVPMVVASAISAVFVISANGWMNTPSGFRMVNG
VASDIHPLVAFANQAWPHQAVHGTFAAYVATGFAMAGFYAADLLRGRKTTQVKKALTLSLAVGTLALPLMLMSGDWAAEA
LAEHQKAKLAAAEAHFKTMAAAPLVIGGWPDPETGTVRYAIKIPKLLSYLANGDANSVVQGLDAFPLGSTPDPRIVHPFF
DLMVGSSFVMAAAAAWFWWLRWREKEVTLKRGALILVLIAAPFGMIALESGWMVTEFGRQPWIIQGYLRTSEAVTPNGGL
LLIFATFLMVYLALSVGILRLLLRPQGRGEEGEEGEEVLHG
>Mature_441_residues
MDDLLAARALMGVSLAFHIVYATIGIGLPLLLMLAEGLALKTGDEEWHEVARRWIRPAAVLFAIGAVSGTILSFELGLLW
PKFMVFAGPMIGLAFSMEGFAFFTEAIFLALYSYGEQRLSRRAQFFCTVPMVVASAISAVFVISANGWMNTPSGFRMVNG
VASDIHPLVAFANQAWPHQAVHGTFAAYVATGFAMAGFYAADLLRGRKTTQVKKALTLSLAVGTLALPLMLMSGDWAAEA
LAEHQKAKLAAAEAHFKTMAAAPLVIGGWPDPETGTVRYAIKIPKLLSYLANGDANSVVQGLDAFPLGSTPDPRIVHPFF
DLMVGSSFVMAAAAAWFWWLRWREKEVTLKRGALILVLIAAPFGMIALESGWMVTEFGRQPWIIQGYLRTSEAVTPNGGL
LLIFATFLMVYLALSVGILRLLLRPQGRGEEGEEGEEVLHG

Specific function: Probable cytochrome [H]

COG id: COG1271

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 1

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome ubiquinol oxidase subunit 1 family [H]

Homologues:

Organism=Escherichia coli, GI1787212, Length=306, Percent_Identity=28.7581699346405, Blast_Score=131, Evalue=1e-31,
Organism=Escherichia coli, GI87081779, Length=315, Percent_Identity=26.6666666666667, Blast_Score=123, Evalue=2e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002585 [H]

Pfam domain/function: PF01654 Bac_Ubq_Cox [H]

EC number: 1.10.3.-

Molecular weight: Translated: 47768; Mature: 47768

Theoretical pI: Translated: 7.04; Mature: 7.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDDLLAARALMGVSLAFHIVYATIGIGLPLLLMLAEGLALKTGDEEWHEVARRWIRPAAV
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCHHHHHHHHHHHHHHHH
LFAIGAVSGTILSFELGLLWPKFMVFAGPMIGLAFSMEGFAFFTEAIFLALYSYGEQRLS
HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
RRAQFFCTVPMVVASAISAVFVISANGWMNTPSGFRMVNGVASDIHPLVAFANQAWPHQA
HHHHHEEHHHHHHHHHHHEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHH
VHGTFAAYVATGFAMAGFYAADLLRGRKTTQVKKALTLSLAVGTLALPLMLMSGDWAAEA
HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
LAEHQKAKLAAAEAHFKTMAAAPLVIGGWPDPETGTVRYAIKIPKLLSYLANGDANSVVQ
HHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCEEEEEEEHHHHHHHHHCCCHHHHHH
GLDAFPLGSTPDPRIVHPFFDLMVGSSFVMAAAAAWFWWLRWREKEVTLKRGALILVLIA
CCCCCCCCCCCCCCEEHHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHCCCEEEEEEC
APFGMIALESGWMVTEFGRQPWIIQGYLRTSEAVTPNGGLLLIFATFLMVYLALSVGILR
CCCCEEEEECCCEEEECCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
LLLRPQGRGEEGEEGEEVLHG
HHHCCCCCCCCCCCHHHHHCC
>Mature Secondary Structure
MDDLLAARALMGVSLAFHIVYATIGIGLPLLLMLAEGLALKTGDEEWHEVARRWIRPAAV
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCHHHHHHHHHHHHHHHH
LFAIGAVSGTILSFELGLLWPKFMVFAGPMIGLAFSMEGFAFFTEAIFLALYSYGEQRLS
HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
RRAQFFCTVPMVVASAISAVFVISANGWMNTPSGFRMVNGVASDIHPLVAFANQAWPHQA
HHHHHEEHHHHHHHHHHHEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHH
VHGTFAAYVATGFAMAGFYAADLLRGRKTTQVKKALTLSLAVGTLALPLMLMSGDWAAEA
HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
LAEHQKAKLAAAEAHFKTMAAAPLVIGGWPDPETGTVRYAIKIPKLLSYLANGDANSVVQ
HHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCEEEEEEEHHHHHHHHHCCCHHHHHH
GLDAFPLGSTPDPRIVHPFFDLMVGSSFVMAAAAAWFWWLRWREKEVTLKRGALILVLIA
CCCCCCCCCCCCCCEEHHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHCCCEEEEEEC
APFGMIALESGWMVTEFGRQPWIIQGYLRTSEAVTPNGGLLLIFATFLMVYLALSVGILR
CCCCEEEEECCCEEEECCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
LLLRPQGRGEEGEEGEEVLHG
HHHCCCCCCCCCCCHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]