| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
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The map label for this gene is 197118051
Identifier: 197118051
GI number: 197118051
Start: 1929811
End: 1931394
Strand: Direct
Name: 197118051
Synonym: Gbem_1664
Alternate gene names: NA
Gene position: 1929811-1931394 (Clockwise)
Preceding gene: 197118050
Following gene: 197118052
Centisome position: 41.81
GC content: 68.88
Gene sequence:
>1584_bases ATGCCATTTCTGCTACGAAACCTCACCCTCTCCCCCGGAGAGGAGGAGCGCCTATTGCGCCCTCTGGCCGCGGCGAAGCT GGGCGTGCCCGAGAGCGCCGTCACCTCCTTGTCGCTGGTTAGAAAAGGGGTCGACGCCCGCAAGAAGGGGAAGATCAAGC TGGTCTACACGGTGCAGGTGACCGTTAAGGACGAGTCGCGGGTCAAGGAGGGGGGGGACGTCTCCCGAGTGGAGCCGGCC GCAAGGGAAGAGTTCCCGAAGCTCGCCTCGAAGGAGCGCATCGTCATCGTCGGCATGGGGCCGGCCGGCCTCTTCGCGGC GCTTAGGCTCGCCGAATACGGGCTTTCCGCCCTGGTCCTCGAGCGCGGACGGGAGGTGGAGAAAAGAGCCGCCGACGTTT CCCGCTTCTGGCGCGCGGGGGAGCTCCTCCCCGAGAGCAACGTGCAGTTCGGCGAGGGGGGGGCGGGGACCTTTTCGGAC GGCAAGCTCACCACGCGGGTGAAGGACGAGAACTGCGGCTGGGTGCTGAGGCAGCTCGTCCATTTCGGAGCGCCGCCGGA GATCCTCTACGCTGCGAAGCCGCACATAGGTACGGACCGGCTGCGCGCCGTGGTGAAGGGGATCAGGGAGAGGCTGATCC AGGCCGGTTTCGAGATCCGCTTCGAGAGCAGGGTGAGCGGGATCGGGCTTTCCGGCAACCGGGTGAGCGCGGTGATGGTG AACGAGACCTCGGAGCACCCCTGCGACACGCTGCTGCTGGCGCCGGGCCACAGCGCGCGCGACACCTACGCCATGCTGCA CCGGGCCGGGGTGGCGCTGGAGGCAAAGCCGTTCGCGGTGGGGCTTAGGGTAGAGCACCCGCAGGCCCTGATCGACGAGA TCCAGTACGGCAGGAACCCGCATCCCCAGCTCCCGCCGGCCGAGTATGCGCAGGCCTACAACAACGAGAAGACCGGGCGC TCCGCCTACTCCTTCTGCATGTGCCCGGGAGGGGTGGTGGTCGCAGCCGCCTCCGAGGCGGGCGGGGTCGTGGTGAACGG GATGAGCGGCTACCGCCGCAACGGCCCCGGCGCCAACAGCGCGCTCGTTGTCACCGTGGGCCCGGCAGATTTCCCCGGCG CCTCCCCGCTTTCCGGGATCGAGTTCCAGCGCGACCTGGAGCGGCGCGCCTTCGCGGCCGGGGGAGGGGGGTACCTGGCG CCGGCGCAGAGCCTTATGGCCTTTCTGGGCGAGGGGAAGGGGAGGGTCGCTTCCAGCTATCGTCCGGGCGTCGTCGAATG CGAGCTGACGCCGCTTCTCCCTCCTGCCGTCGCCGCGACGCTCAAGGAGGGGATTCGCCACTTCGACCGGAAGATGCGCG GCTTCATGAGCGCCGAGGCTACCTTGACCGCGGTCGAGACCAGGACCTCGGCCCCCTTGCGCATCCTGCGGGCTCCCGAC CTGCAGTCGGTCTCCCATCCGGGACTCTACCCCACAGGCGAGGGAGCGGGTTACGCCGGCGGTATCATGAGCGCCGCCCT CGACGGGATCCGCGTGGCCGACGCCATCGCGGCGAGGCTTCGCGCCGAGAGCCAAAAGCCTTAG
Upstream 100 bases:
>100_bases CACATCCCTAAATCCACCCCACCGCTGGACATCGTCATCATCGTCGAGCAGCTCCTGGAAAGAAAGAGGCGCGGCTCCAG CGCCGCCTGACGGAAACCCC
Downstream 100 bases:
>100_bases CAGTAGCACCAACCGGTTTCAAGCCTACAAGGAGCTTCATGTGAAAAAGAAATGCGTTGCCGAGATAAAGGACCGCGACC TCGTGGAAGCGGTCTTCCTG
Product: FAD-dependent oxidoreductase
Products: NA
Alternate protein names: ORF1 [H]
Number of amino acids: Translated: 527; Mature: 526
Protein sequence:
>527_residues MPFLLRNLTLSPGEEERLLRPLAAAKLGVPESAVTSLSLVRKGVDARKKGKIKLVYTVQVTVKDESRVKEGGDVSRVEPA AREEFPKLASKERIVIVGMGPAGLFAALRLAEYGLSALVLERGREVEKRAADVSRFWRAGELLPESNVQFGEGGAGTFSD GKLTTRVKDENCGWVLRQLVHFGAPPEILYAAKPHIGTDRLRAVVKGIRERLIQAGFEIRFESRVSGIGLSGNRVSAVMV NETSEHPCDTLLLAPGHSARDTYAMLHRAGVALEAKPFAVGLRVEHPQALIDEIQYGRNPHPQLPPAEYAQAYNNEKTGR SAYSFCMCPGGVVVAAASEAGGVVVNGMSGYRRNGPGANSALVVTVGPADFPGASPLSGIEFQRDLERRAFAAGGGGYLA PAQSLMAFLGEGKGRVASSYRPGVVECELTPLLPPAVAATLKEGIRHFDRKMRGFMSAEATLTAVETRTSAPLRILRAPD LQSVSHPGLYPTGEGAGYAGGIMSAALDGIRVADAIAARLRAESQKP
Sequences:
>Translated_527_residues MPFLLRNLTLSPGEEERLLRPLAAAKLGVPESAVTSLSLVRKGVDARKKGKIKLVYTVQVTVKDESRVKEGGDVSRVEPA AREEFPKLASKERIVIVGMGPAGLFAALRLAEYGLSALVLERGREVEKRAADVSRFWRAGELLPESNVQFGEGGAGTFSD GKLTTRVKDENCGWVLRQLVHFGAPPEILYAAKPHIGTDRLRAVVKGIRERLIQAGFEIRFESRVSGIGLSGNRVSAVMV NETSEHPCDTLLLAPGHSARDTYAMLHRAGVALEAKPFAVGLRVEHPQALIDEIQYGRNPHPQLPPAEYAQAYNNEKTGR SAYSFCMCPGGVVVAAASEAGGVVVNGMSGYRRNGPGANSALVVTVGPADFPGASPLSGIEFQRDLERRAFAAGGGGYLA PAQSLMAFLGEGKGRVASSYRPGVVECELTPLLPPAVAATLKEGIRHFDRKMRGFMSAEATLTAVETRTSAPLRILRAPD LQSVSHPGLYPTGEGAGYAGGIMSAALDGIRVADAIAARLRAESQKP >Mature_526_residues PFLLRNLTLSPGEEERLLRPLAAAKLGVPESAVTSLSLVRKGVDARKKGKIKLVYTVQVTVKDESRVKEGGDVSRVEPAA REEFPKLASKERIVIVGMGPAGLFAALRLAEYGLSALVLERGREVEKRAADVSRFWRAGELLPESNVQFGEGGAGTFSDG KLTTRVKDENCGWVLRQLVHFGAPPEILYAAKPHIGTDRLRAVVKGIRERLIQAGFEIRFESRVSGIGLSGNRVSAVMVN ETSEHPCDTLLLAPGHSARDTYAMLHRAGVALEAKPFAVGLRVEHPQALIDEIQYGRNPHPQLPPAEYAQAYNNEKTGRS AYSFCMCPGGVVVAAASEAGGVVVNGMSGYRRNGPGANSALVVTVGPADFPGASPLSGIEFQRDLERRAFAAGGGGYLAP AQSLMAFLGEGKGRVASSYRPGVVECELTPLLPPAVAATLKEGIRHFDRKMRGFMSAEATLTAVETRTSAPLRILRAPDL QSVSHPGLYPTGEGAGYAGGIMSAALDGIRVADAIAARLRAESQKP
Specific function: Unknown
COG id: COG2509
COG function: function code R; Uncharacterized FAD-dependent dehydrogenases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004792 [H]
Pfam domain/function: PF03486 HI0933_like [H]
EC number: NA
Molecular weight: Translated: 56133; Mature: 56002
Theoretical pI: Translated: 9.60; Mature: 9.60
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPFLLRNLTLSPGEEERLLRPLAAAKLGVPESAVTSLSLVRKGVDARKKGKIKLVYTVQV CCEEEECCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCEEEEEEEEE TVKDESRVKEGGDVSRVEPAAREEFPKLASKERIVIVGMGPAGLFAALRLAEYGLSALVL EECCHHHHCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCHHHHHH ERGREVEKRAADVSRFWRAGELLPESNVQFGEGGAGTFSDGKLTTRVKDENCGWVLRQLV HHCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHH HFGAPPEILYAAKPHIGTDRLRAVVKGIRERLIQAGFEIRFESRVSGIGLSGNRVSAVMV HCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCEEEEEEE NETSEHPCDTLLLAPGHSARDTYAMLHRAGVALEAKPFAVGLRVEHPQALIDEIQYGRNP ECCCCCCCCEEEECCCCCCHHHHHHHHHCCCEEECCCEEEEEEECCHHHHHHHHHHCCCC HPQLPPAEYAQAYNNEKTGRSAYSFCMCPGGVVVAAASEAGGVVVNGMSGYRRNGPGANS CCCCCHHHHHHHHCCCCCCCHHHEEEECCCCEEEEEECCCCCEEEECCCCCCCCCCCCCC ALVVTVGPADFPGASPLSGIEFQRDLERRAFAAGGGGYLAPAQSLMAFLGEGKGRVASSY EEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCC RPGVVECELTPLLPPAVAATLKEGIRHFDRKMRGFMSAEATLTAVETRTSAPLRILRAPD CCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCEEEEECCC LQSVSHPGLYPTGEGAGYAGGIMSAALDGIRVADAIAARLRAESQKP CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure PFLLRNLTLSPGEEERLLRPLAAAKLGVPESAVTSLSLVRKGVDARKKGKIKLVYTVQV CEEEECCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCEEEEEEEEE TVKDESRVKEGGDVSRVEPAAREEFPKLASKERIVIVGMGPAGLFAALRLAEYGLSALVL EECCHHHHCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCHHHHHH ERGREVEKRAADVSRFWRAGELLPESNVQFGEGGAGTFSDGKLTTRVKDENCGWVLRQLV HHCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHH HFGAPPEILYAAKPHIGTDRLRAVVKGIRERLIQAGFEIRFESRVSGIGLSGNRVSAVMV HCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCEEEEEEE NETSEHPCDTLLLAPGHSARDTYAMLHRAGVALEAKPFAVGLRVEHPQALIDEIQYGRNP ECCCCCCCCEEEECCCCCCHHHHHHHHHCCCEEECCCEEEEEEECCHHHHHHHHHHCCCC HPQLPPAEYAQAYNNEKTGRSAYSFCMCPGGVVVAAASEAGGVVVNGMSGYRRNGPGANS CCCCCHHHHHHHHCCCCCCCHHHEEEECCCCEEEEEECCCCCEEEECCCCCCCCCCCCCC ALVVTVGPADFPGASPLSGIEFQRDLERRAFAAGGGGYLAPAQSLMAFLGEGKGRVASSY EEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCC RPGVVECELTPLLPPAVAATLKEGIRHFDRKMRGFMSAEATLTAVETRTSAPLRILRAPD CCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCEEEEECCC LQSVSHPGLYPTGEGAGYAGGIMSAALDGIRVADAIAARLRAESQKP CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8396545 [H]