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The map label for this gene is yhaM [H]

Identifier: 197118052

GI number: 197118052

Start: 1931435

End: 1932601

Strand: Direct

Name: yhaM [H]

Synonym: Gbem_1665

Alternate gene names: 197118052

Gene position: 1931435-1932601 (Clockwise)

Preceding gene: 197118051

Following gene: 197118053

Centisome position: 41.85

GC content: 63.92

Gene sequence:

>1167_bases
GTGAAAAAGAAATGCGTTGCCGAGATAAAGGACCGCGACCTCGTGGAAGCGGTCTTCCTGGTCAAGGAGAAGATCGTGGC
CATGGCCAAGAACGGCAAGCCGTACCTCACCCTGAAGCTTATGGACAAAAGCGGCGAGGTCGACGCCAAGGTCTGGGACA
ACGCGGACCAGGTGGGGGCGCTTTTCGATCGCAACGACTTCCTGGAGGTGCGCGCCAAGGCGAGCGTCTACCTGGGGAAG
ATGCAGCTGATCGTCTCGGAGCTGAAGAAGGTTCCCGATGACTCGGTGGATCTGGCGGATTTTCTTCCCGAAACCGACCG
GGACATCGAGGCGATGGTCGAGGAGCTGCACGCCCTCGTCGCCGGCGTGAAGGACCCTGACCTAGCCAGGCTTTTGTCCT
CCTTCTTCCACGACCCTGAGCTTTTGGCCCAGTACAGCGTCGCCCCCGCGGCCAAGGGGATGCACCACGTCTATCTCGGG
GGGCTTTTGGAGCACTCGCTTGCCGTGGCGAAGCTGGTAGACGCCATGGTCCCGCTCTACCCGGGGCTGAACCGGGACCT
CCTCGTCGCCGGGGCGCTTTTGCACGACGTGGGTAAGGTGCGGGAGATGACCTACCTGCGCTGCTTCGACTACTCGGACG
AGGGGAAGCTGATCGGCCACATCACCATCGGGGCCGAGATGCTGCACGAGCGGATCACGGCGCTGCCGGGGTTTCCGGCC
GAGCTCGCCATGCTCTTGAAGCACATGATCCTGTCGCATCACGGCCAGTACGAGTACGGCTCCCCGAAGCGCCCGAAGAC
GCTGGAGGCGACCATCCTGAACTACCTGGACGATCTCGACTCCAAGATCAACGGCATCCGGACCCACATCCGCAAGGAAC
CCGACAACCCCTCGCGCTGGACCTCGTACCACCGCCTCTACGACCGCTACTTCTTCAAGGAGAACTGCCTGCCGGAGGAG
GAGCTGGAACTCTCCCCGGCGGCAGGCCTGGAGCCGTCCGAGCTGATGCCGCAGACGGTGGAGGCGCCGGTGCCGGTACC
GTCCCCCTCTAGCGCGCCGGAGCAGGGAGCGCCGCGCCGGGAGCGCCAGGAGGCCCCCCGCGCTGGCCAGGAGCGCAAGA
GCTTCAGCAACAACCCTTTCGCCGCGCTGAAAAACGGCAAGGAATAA

Upstream 100 bases:

>100_bases
GGGATCCGCGTGGCCGACGCCATCGCGGCGAGGCTTCGCGCCGAGAGCCAAAAGCCTTAGCAGTAGCACCAACCGGTTTC
AAGCCTACAAGGAGCTTCAT

Downstream 100 bases:

>100_bases
GCATCCGCTGAGTTTGAAGCGGGTTCGGGGCGCAGCCAAAAAGCCCCGGCCGCGCAAGGAGGAAATGCCATGTTATTCGA
GACCATAGTGGTTGGCGCCC

Product: 3'-to-5' exonuclease YhaM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 388; Mature: 388

Protein sequence:

>388_residues
MKKKCVAEIKDRDLVEAVFLVKEKIVAMAKNGKPYLTLKLMDKSGEVDAKVWDNADQVGALFDRNDFLEVRAKASVYLGK
MQLIVSELKKVPDDSVDLADFLPETDRDIEAMVEELHALVAGVKDPDLARLLSSFFHDPELLAQYSVAPAAKGMHHVYLG
GLLEHSLAVAKLVDAMVPLYPGLNRDLLVAGALLHDVGKVREMTYLRCFDYSDEGKLIGHITIGAEMLHERITALPGFPA
ELAMLLKHMILSHHGQYEYGSPKRPKTLEATILNYLDDLDSKINGIRTHIRKEPDNPSRWTSYHRLYDRYFFKENCLPEE
ELELSPAAGLEPSELMPQTVEAPVPVPSPSSAPEQGAPRRERQEAPRAGQERKSFSNNPFAALKNGKE

Sequences:

>Translated_388_residues
MKKKCVAEIKDRDLVEAVFLVKEKIVAMAKNGKPYLTLKLMDKSGEVDAKVWDNADQVGALFDRNDFLEVRAKASVYLGK
MQLIVSELKKVPDDSVDLADFLPETDRDIEAMVEELHALVAGVKDPDLARLLSSFFHDPELLAQYSVAPAAKGMHHVYLG
GLLEHSLAVAKLVDAMVPLYPGLNRDLLVAGALLHDVGKVREMTYLRCFDYSDEGKLIGHITIGAEMLHERITALPGFPA
ELAMLLKHMILSHHGQYEYGSPKRPKTLEATILNYLDDLDSKINGIRTHIRKEPDNPSRWTSYHRLYDRYFFKENCLPEE
ELELSPAAGLEPSELMPQTVEAPVPVPSPSSAPEQGAPRRERQEAPRAGQERKSFSNNPFAALKNGKE
>Mature_388_residues
MKKKCVAEIKDRDLVEAVFLVKEKIVAMAKNGKPYLTLKLMDKSGEVDAKVWDNADQVGALFDRNDFLEVRAKASVYLGK
MQLIVSELKKVPDDSVDLADFLPETDRDIEAMVEELHALVAGVKDPDLARLLSSFFHDPELLAQYSVAPAAKGMHHVYLG
GLLEHSLAVAKLVDAMVPLYPGLNRDLLVAGALLHDVGKVREMTYLRCFDYSDEGKLIGHITIGAEMLHERITALPGFPA
ELAMLLKHMILSHHGQYEYGSPKRPKTLEATILNYLDDLDSKINGIRTHIRKEPDNPSRWTSYHRLYDRYFFKENCLPEE
ELELSPAAGLEPSELMPQTVEAPVPVPSPSSAPEQGAPRRERQEAPRAGQERKSFSNNPFAALKNGKE

Specific function: Shows a 3'-5' exoribonuclease activity [H]

COG id: COG3481

COG function: function code R; Predicted HD-superfamily hydrolase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yhaM family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020873
- InterPro:   IPR003607
- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR004365 [H]

Pfam domain/function: PF01336 tRNA_anti [H]

EC number: NA

Molecular weight: Translated: 43376; Mature: 43376

Theoretical pI: Translated: 5.93; Mature: 5.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKKCVAEIKDRDLVEAVFLVKEKIVAMAKNGKPYLTLKLMDKSGEVDAKVWDNADQVGA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHCCCHHHHHH
LFDRNDFLEVRAKASVYLGKMQLIVSELKKVPDDSVDLADFLPETDRDIEAMVEELHALV
HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCHHHHHHHHHHHHH
AGVKDPDLARLLSSFFHDPELLAQYSVAPAAKGMHHVYLGGLLEHSLAVAKLVDAMVPLY
HCCCCHHHHHHHHHHCCCHHHHHHHCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
PGLNRDLLVAGALLHDVGKVREMTYLRCFDYSDEGKLIGHITIGAEMLHERITALPGFPA
CCCCHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCEEEEEEHHHHHHHHHHHHCCCCHH
ELAMLLKHMILSHHGQYEYGSPKRPKTLEATILNYLDDLDSKINGIRTHIRKEPDNPSRW
HHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHH
TSYHRLYDRYFFKENCLPEEELELSPAAGLEPSELMPQTVEAPVPVPSPSSAPEQGAPRR
HHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCHHHHCCHHCCCCCCCCCCCCCCCCCCCHH
ERQEAPRAGQERKSFSNNPFAALKNGKE
HHHHCCCCCHHHHHCCCCCCHHCCCCCC
>Mature Secondary Structure
MKKKCVAEIKDRDLVEAVFLVKEKIVAMAKNGKPYLTLKLMDKSGEVDAKVWDNADQVGA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHCCCHHHHHH
LFDRNDFLEVRAKASVYLGKMQLIVSELKKVPDDSVDLADFLPETDRDIEAMVEELHALV
HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCHHHHHHHHHHHHH
AGVKDPDLARLLSSFFHDPELLAQYSVAPAAKGMHHVYLGGLLEHSLAVAKLVDAMVPLY
HCCCCHHHHHHHHHHCCCHHHHHHHCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
PGLNRDLLVAGALLHDVGKVREMTYLRCFDYSDEGKLIGHITIGAEMLHERITALPGFPA
CCCCHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCEEEEEEHHHHHHHHHHHHCCCCHH
ELAMLLKHMILSHHGQYEYGSPKRPKTLEATILNYLDDLDSKINGIRTHIRKEPDNPSRW
HHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHH
TSYHRLYDRYFFKENCLPEEELELSPAAGLEPSELMPQTVEAPVPVPSPSSAPEQGAPRR
HHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCHHHHCCHHCCCCCCCCCCCCCCCCCCCHH
ERQEAPRAGQERKSFSNNPFAALKNGKE
HHHHCCCCCHHHHHCCCCCCHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA