| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
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The map label for this gene is pyk [H]
Identifier: 197117570
GI number: 197117570
Start: 1377208
End: 1378653
Strand: Direct
Name: pyk [H]
Synonym: Gbem_1182
Alternate gene names: 197117570
Gene position: 1377208-1378653 (Clockwise)
Preceding gene: 197117569
Following gene: 197117571
Centisome position: 29.84
GC content: 64.18
Gene sequence:
>1446_bases ATGTTCCGTCACACAAAGATCGTTGCCACTGTCGGACCCGCCAGCGAATCCGAAGAGATGCTCGGCGCCTTGATAAAGGC CGGCGTCGACGTTTTCCGCCTCAACTTCTCCCATGGCGACCATGCCGCCAAATCCGCCGTCATCCGCAGCATCCGCAAAC TCTGCGACCAACATGAGCATTCTGTCGCCATCCTCGGGGACCTGCAGGGGCCGAAGATCCGCACCGGCCTCATGAAGGGG GGCGGGATGCAGCTCACCGCCGGGACCGAAGTGATCGTCACCACCCGTGAGCTGCTAGGCGAGGGGAGCCTCATCCCGAC CATCTACCAGGGGCTCCCCGGGGACGTGAAGCCCGACGACCGCATCCTTTTGGACGACGGCCTGATGGAGCTGAGGGTGC TGGGGGTGGAAGGGGGCGATGTGCGCTGCCTCGTCGTGACCGGAGGCCTCCTCAAGGACCGCAAGGGGATCAACCTCCCC GGCGCCAAGGTTTCCGCCCCCGCCATGACCGGCAAGGACCGCGACGACCTCGAATTCTGCATGGAGCAGCGGCTTGACTA CGTCGCCCTTTCCTTCGTGCGCGAGGCATCCGACGTGCAGGAATTGAGGAGCATCATCGACAGCCGCGGCTCCCAGCTCC GCATCATCTCCAAGATCGAGAAGCCGGAGGCGGTGCTCAACTTCGGCGCCATCTTGCAGGCTTCCGACGGGGTCATGGTG GCCCGAGGCGACCTGGGGGTGGAGTTGAATCCCGAGAAGGTTCCGCTCATCCAGAAGCGGATCATCCGCAGTTGCAACGA TGCCGGAAAGCCGGTGATCACCGCCACCCAAATGCTGGAGAGCATGGTGAACAACCCGCGCCCGACCCGCGCCGAGACCT CCGACGTCGCCAACGCCATCCTGGACGGCACCGACGCCATCATGCTTTCCGCCGAGACCGCGTCCGGCAAGTATCCGGTG GAGGCGGTCTCCATGATGGTGCAGGTGGCGCGCGACGTGGAAGCGGACCCGCAGCTCATGGCGCAAAGCTGCCACATCGC CCAGACCGAGGCGGAGCCGAACCTCTCCGAGGTGATCGGGCTTGCCGCCTGCCATGCGGCGGAAAGCGTCAAGGCATCGG CGATCCTTGCCTTCACCCAGACCGGAGGGACCGCGGCTCTCGTTTCCAAGTGCCGGCCGGCCCAGCCCATCATCGCCGTG ACACCATCCGAAGAGGTGCGGCGCGTGCTCGCCCTTTATGCCGGGGTGCATTCGCTGCGCGTAGATATCGAGGGGGACAC TGAATCCCAGATCATCTCCGTCGAGAAAGCGGTGCTGGAAACCGGCTGGCTCAACAAGGGGGAGTTGGTGGTGATAACCA TGGGAAGCCCGCTTTCTTCAGCGGGAACCACCAACCTGATGAAGGTGCATCGGCTGGGGGAGCCTGAGGTTAAGCGGCGT CTTTGA
Upstream 100 bases:
>100_bases CGCGCGGATTTCGGGTAATTTGTACAGGCGCCGGCGCGCGCAGGGGCTTCAAGCCCGGGTGCCGTTGCCGGCCGCTCATT CCCGCCTACGAGGAGATCCC
Downstream 100 bases:
>100_bases TTCGGCGCCGCGATAGCTGTGAGCGATGAGCATGAAGAAGAGGGGACGGCGCGCTGCTGTCCCTTCTTTTTTTTACCCTG TGTGCTGGAATCGCTTGACC
Product: pyruvate kinase
Products: NA
Alternate protein names: PK [H]
Number of amino acids: Translated: 481; Mature: 481
Protein sequence:
>481_residues MFRHTKIVATVGPASESEEMLGALIKAGVDVFRLNFSHGDHAAKSAVIRSIRKLCDQHEHSVAILGDLQGPKIRTGLMKG GGMQLTAGTEVIVTTRELLGEGSLIPTIYQGLPGDVKPDDRILLDDGLMELRVLGVEGGDVRCLVVTGGLLKDRKGINLP GAKVSAPAMTGKDRDDLEFCMEQRLDYVALSFVREASDVQELRSIIDSRGSQLRIISKIEKPEAVLNFGAILQASDGVMV ARGDLGVELNPEKVPLIQKRIIRSCNDAGKPVITATQMLESMVNNPRPTRAETSDVANAILDGTDAIMLSAETASGKYPV EAVSMMVQVARDVEADPQLMAQSCHIAQTEAEPNLSEVIGLAACHAAESVKASAILAFTQTGGTAALVSKCRPAQPIIAV TPSEEVRRVLALYAGVHSLRVDIEGDTESQIISVEKAVLETGWLNKGELVVITMGSPLSSAGTTNLMKVHRLGEPEVKRR L
Sequences:
>Translated_481_residues MFRHTKIVATVGPASESEEMLGALIKAGVDVFRLNFSHGDHAAKSAVIRSIRKLCDQHEHSVAILGDLQGPKIRTGLMKG GGMQLTAGTEVIVTTRELLGEGSLIPTIYQGLPGDVKPDDRILLDDGLMELRVLGVEGGDVRCLVVTGGLLKDRKGINLP GAKVSAPAMTGKDRDDLEFCMEQRLDYVALSFVREASDVQELRSIIDSRGSQLRIISKIEKPEAVLNFGAILQASDGVMV ARGDLGVELNPEKVPLIQKRIIRSCNDAGKPVITATQMLESMVNNPRPTRAETSDVANAILDGTDAIMLSAETASGKYPV EAVSMMVQVARDVEADPQLMAQSCHIAQTEAEPNLSEVIGLAACHAAESVKASAILAFTQTGGTAALVSKCRPAQPIIAV TPSEEVRRVLALYAGVHSLRVDIEGDTESQIISVEKAVLETGWLNKGELVVITMGSPLSSAGTTNLMKVHRLGEPEVKRR L >Mature_481_residues MFRHTKIVATVGPASESEEMLGALIKAGVDVFRLNFSHGDHAAKSAVIRSIRKLCDQHEHSVAILGDLQGPKIRTGLMKG GGMQLTAGTEVIVTTRELLGEGSLIPTIYQGLPGDVKPDDRILLDDGLMELRVLGVEGGDVRCLVVTGGLLKDRKGINLP GAKVSAPAMTGKDRDDLEFCMEQRLDYVALSFVREASDVQELRSIIDSRGSQLRIISKIEKPEAVLNFGAILQASDGVMV ARGDLGVELNPEKVPLIQKRIIRSCNDAGKPVITATQMLESMVNNPRPTRAETSDVANAILDGTDAIMLSAETASGKYPV EAVSMMVQVARDVEADPQLMAQSCHIAQTEAEPNLSEVIGLAACHAAESVKASAILAFTQTGGTAALVSKCRPAQPIIAV TPSEEVRRVLALYAGVHSLRVDIEGDTESQIISVEKAVLETGWLNKGELVVITMGSPLSSAGTTNLMKVHRLGEPEVKRR L
Specific function: Glycolysis; final step. [C]
COG id: COG0469
COG function: function code G; Pyruvate kinase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the pyruvate kinase family [H]
Homologues:
Organism=Homo sapiens, GI32967597, Length=491, Percent_Identity=44.1955193482688, Blast_Score=335, Evalue=4e-92, Organism=Homo sapiens, GI10835121, Length=491, Percent_Identity=44.1955193482688, Blast_Score=335, Evalue=8e-92, Organism=Homo sapiens, GI33286418, Length=489, Percent_Identity=42.5357873210634, Blast_Score=333, Evalue=2e-91, Organism=Homo sapiens, GI33286422, Length=493, Percent_Identity=41.9878296146045, Blast_Score=332, Evalue=5e-91, Organism=Homo sapiens, GI33286420, Length=493, Percent_Identity=41.9878296146045, Blast_Score=332, Evalue=5e-91, Organism=Homo sapiens, GI310128732, Length=288, Percent_Identity=44.0972222222222, Blast_Score=212, Evalue=6e-55, Organism=Homo sapiens, GI310128730, Length=288, Percent_Identity=44.0972222222222, Blast_Score=212, Evalue=6e-55, Organism=Homo sapiens, GI310128736, Length=236, Percent_Identity=39.8305084745763, Blast_Score=155, Evalue=8e-38, Organism=Homo sapiens, GI310128734, Length=236, Percent_Identity=39.8305084745763, Blast_Score=155, Evalue=8e-38, Organism=Homo sapiens, GI310128738, Length=215, Percent_Identity=38.6046511627907, Blast_Score=135, Evalue=9e-32, Organism=Escherichia coli, GI1787965, Length=474, Percent_Identity=43.0379746835443, Blast_Score=355, Evalue=4e-99, Organism=Escherichia coli, GI1788160, Length=477, Percent_Identity=41.5094339622642, Blast_Score=324, Evalue=7e-90, Organism=Caenorhabditis elegans, GI17544584, Length=480, Percent_Identity=41.875, Blast_Score=344, Evalue=5e-95, Organism=Caenorhabditis elegans, GI71984413, Length=484, Percent_Identity=40.9090909090909, Blast_Score=301, Evalue=4e-82, Organism=Caenorhabditis elegans, GI17506829, Length=484, Percent_Identity=40.9090909090909, Blast_Score=301, Evalue=5e-82, Organism=Caenorhabditis elegans, GI71984406, Length=484, Percent_Identity=40.9090909090909, Blast_Score=301, Evalue=5e-82, Organism=Caenorhabditis elegans, GI17506831, Length=484, Percent_Identity=40.9090909090909, Blast_Score=301, Evalue=6e-82, Organism=Saccharomyces cerevisiae, GI6319279, Length=482, Percent_Identity=38.3817427385892, Blast_Score=287, Evalue=3e-78, Organism=Saccharomyces cerevisiae, GI6324923, Length=494, Percent_Identity=37.246963562753, Blast_Score=283, Evalue=3e-77, Organism=Drosophila melanogaster, GI24648964, Length=485, Percent_Identity=41.8556701030928, Blast_Score=335, Evalue=6e-92, Organism=Drosophila melanogaster, GI28571814, Length=485, Percent_Identity=41.8556701030928, Blast_Score=334, Evalue=7e-92, Organism=Drosophila melanogaster, GI24648966, Length=410, Percent_Identity=42.6829268292683, Blast_Score=299, Evalue=2e-81, Organism=Drosophila melanogaster, GI24581235, Length=492, Percent_Identity=32.9268292682927, Blast_Score=265, Evalue=4e-71, Organism=Drosophila melanogaster, GI24646914, Length=279, Percent_Identity=41.2186379928315, Blast_Score=182, Evalue=4e-46,
Paralogues:
None
Copy number: 500 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 124 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001697 - InterPro: IPR015813 - InterPro: IPR011037 - InterPro: IPR015794 - InterPro: IPR015793 - InterPro: IPR015795 - InterPro: IPR015806 [H]
Pfam domain/function: PF00224 PK; PF02887 PK_C [H]
EC number: =2.7.1.40 [H]
Molecular weight: Translated: 51386; Mature: 51386
Theoretical pI: Translated: 5.53; Mature: 5.53
Prosite motif: PS00110 PYRUVATE_KINASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 4.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFRHTKIVATVGPASESEEMLGALIKAGVDVFRLNFSHGDHAAKSAVIRSIRKLCDQHEH CCCCEEEEEEECCCCCHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCC SVAILGDLQGPKIRTGLMKGGGMQLTAGTEVIVTTRELLGEGSLIPTIYQGLPGDVKPDD CEEEEECCCCCEEEEHHCCCCCEEEECCCEEEEEEHHHHCCCCCCHHHHHCCCCCCCCCC RILLDDGLMELRVLGVEGGDVRCLVVTGGLLKDRKGINLPGAKVSAPAMTGKDRDDLEFC EEEECCCCEEEEEEEECCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH MEQRLDYVALSFVREASDVQELRSIIDSRGSQLRIISKIEKPEAVLNFGAILQASDGVMV HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHCCCCHHHHHHHHEEECCCCEEE ARGDLGVELNPEKVPLIQKRIIRSCNDAGKPVITATQMLESMVNNPRPTRAETSDVANAI EECCCCCEECCCCCCHHHHHHHHHCCCCCCCEEHHHHHHHHHHCCCCCCCCCHHHHHHHH LDGTDAIMLSAETASGKYPVEAVSMMVQVARDVEADPQLMAQSCHIAQTEAEPNLSEVIG HCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHCCCEECCCCCCHHHHHH LAACHAAESVKASAILAFTQTGGTAALVSKCRPAQPIIAVTPSEEVRRVLALYAGVHSLR HHHHHHHHHCCCEEEEEEECCCCHHHHHHCCCCCCCEEEECCHHHHHHHHHHHHCCEEEE VDIEGDTESQIISVEKAVLETGWLNKGELVVITMGSPLSSAGTTNLMKVHRLGEPEVKRR EEECCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCHHHHHHHCCCCHHHHHC L C >Mature Secondary Structure MFRHTKIVATVGPASESEEMLGALIKAGVDVFRLNFSHGDHAAKSAVIRSIRKLCDQHEH CCCCEEEEEEECCCCCHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCC SVAILGDLQGPKIRTGLMKGGGMQLTAGTEVIVTTRELLGEGSLIPTIYQGLPGDVKPDD CEEEEECCCCCEEEEHHCCCCCEEEECCCEEEEEEHHHHCCCCCCHHHHHCCCCCCCCCC RILLDDGLMELRVLGVEGGDVRCLVVTGGLLKDRKGINLPGAKVSAPAMTGKDRDDLEFC EEEECCCCEEEEEEEECCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH MEQRLDYVALSFVREASDVQELRSIIDSRGSQLRIISKIEKPEAVLNFGAILQASDGVMV HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHCCCCHHHHHHHHEEECCCCEEE ARGDLGVELNPEKVPLIQKRIIRSCNDAGKPVITATQMLESMVNNPRPTRAETSDVANAI EECCCCCEECCCCCCHHHHHHHHHCCCCCCCEEHHHHHHHHHHCCCCCCCCCHHHHHHHH LDGTDAIMLSAETASGKYPVEAVSMMVQVARDVEADPQLMAQSCHIAQTEAEPNLSEVIG HCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHCCCEECCCCCCHHHHHH LAACHAAESVKASAILAFTQTGGTAALVSKCRPAQPIIAVTPSEEVRRVLALYAGVHSLR HHHHHHHHHCCCEEEEEEECCCCHHHHHHCCCCCCCEEEECCHHHHHHHHHHHHCCEEEE VDIEGDTESQIISVEKAVLETGWLNKGELVVITMGSPLSSAGTTNLMKVHRLGEPEVKRR EEECCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCHHHHHHHCCCCHHHHHC L C
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11466286; 9625784 [H]