| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
Click here to switch to the map view.
The map label for this gene is 197117440
Identifier: 197117440
GI number: 197117440
Start: 1221992
End: 1223185
Strand: Reverse
Name: 197117440
Synonym: Gbem_1050
Alternate gene names: NA
Gene position: 1223185-1221992 (Counterclockwise)
Preceding gene: 197117441
Following gene: 197117439
Centisome position: 26.5
GC content: 69.18
Gene sequence:
>1194_bases ATGACCGAGAGCTCCCACAAAAAGCGCTGCTGCGACGAAACCGGCTCCCTGTGCGCGTCGCTCTTCCTGCACGGGGTGCT TTTCCTCGTCCTTAGTTCCAGCTCCCATATCGAGCCTCCCCTCGGGGCGCAGACCCGGCTGGACATCCTGTGGTTCACTC CGATAGCAGTTCCCCCCCCGCTCCAGGCGACACCGCAGGCCGCACCTGCCGCAACAGTCAAACCGCGCCCCCAGCGGCAG CGGCCCCTTGGGGCAAAGCGCCCCGAAGCCCCCCCCGAGGCCTTACCCGCCAAGGCTGTACCGGCCGCGCCGATGGTATT GCGCATCGCGGCTCCAAGCTCGCCGCACCCGGCTCCAGAGCACGGAACACGCCCGGAACAAAGAGCGTCGCTTGCCGTCA AGGCCCCGGCGTCGCCTCCGCCCAAACCGCCCACCGCCCCCACGCGGGCAGCGGCACCCGCCGCTCGAACAGCCCCCCCG GCGGAGGCGCCGCCGGTTGCGCCCGAAAGAAAAGACGCCGAGCCGGCGCAAGTAGCGACGGAGGCTCATCCGCAGATGCA GGCAGCGCAAGAGAGCCCCCCGCAGATGCAGGCCTCGCGGGAGCGGCCCCAGCCGGCAGCGCTCGGCTTGGAGCGGGCGG CGCCGCGGCCGCGGCCGGAACCAGCCGTGAAGCGGCAGCCGGACAAGGCGCAGCAACAGCGCGCCCACGAACGCGGCACC AGCTTCGCCGCGCTGCAGGGAGACCTGAAGCTGACGGTCGCGGGGGGCGGGGTGAAGCTCTCGATCGCCTTCAGGGAATT CCCCCGCTCCCGGCGCGACCGGACTCCCACCAAGGCGGAGGCGCGGCGCCTGCAGCAGGTGGCGCCGGTCACCGCCAAGA GGGACGAACGGACCAGGGAAGCTGTGATCGAAAGGGCGGGTGAAGGGGTCTACATCTTCAGCGCCGAGCCGGAGACGGCA AGTGCTGCGCAAGCGAGCTTCACCCTCACCATCTACGAGGCCGGCAAACGGGAAAAAAAGGCCGCCATCGGGACACGCAC CCTGCAAAAGAAGACGGTAGTGGCGCGGATACTGATGCCGGAGGGGGTGCTCTGGGACGACGACAGCGCCTTCACCGGGA GCTTAGAGGACTCTGACAGCACCACCAAGTTCAACGCCCAGACCGGGCTGTACTGGAAGGAGTATGCCGACTAG
Upstream 100 bases:
>100_bases AACGAACGACTGAGGGTGCAGTACCAGGCACTGCAACTCAAAGGGGGGCAGGCAACTTTTTGATTTCAAAAAGTAGCCTG TCCCCCCCGGAGCCGCCACC
Downstream 100 bases:
>100_bases ACCACGTGGCCCAGCGTACGAAGGAGGTTGCCATGCTTCCGGAAACGACCATTGTCATCGCCGCCTACAACGAACAACAG AGACTGCCGGCAACGCTTAG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 397; Mature: 396
Protein sequence:
>397_residues MTESSHKKRCCDETGSLCASLFLHGVLFLVLSSSSHIEPPLGAQTRLDILWFTPIAVPPPLQATPQAAPAATVKPRPQRQ RPLGAKRPEAPPEALPAKAVPAAPMVLRIAAPSSPHPAPEHGTRPEQRASLAVKAPASPPPKPPTAPTRAAAPAARTAPP AEAPPVAPERKDAEPAQVATEAHPQMQAAQESPPQMQASRERPQPAALGLERAAPRPRPEPAVKRQPDKAQQQRAHERGT SFAALQGDLKLTVAGGGVKLSIAFREFPRSRRDRTPTKAEARRLQQVAPVTAKRDERTREAVIERAGEGVYIFSAEPETA SAAQASFTLTIYEAGKREKKAAIGTRTLQKKTVVARILMPEGVLWDDDSAFTGSLEDSDSTTKFNAQTGLYWKEYAD
Sequences:
>Translated_397_residues MTESSHKKRCCDETGSLCASLFLHGVLFLVLSSSSHIEPPLGAQTRLDILWFTPIAVPPPLQATPQAAPAATVKPRPQRQ RPLGAKRPEAPPEALPAKAVPAAPMVLRIAAPSSPHPAPEHGTRPEQRASLAVKAPASPPPKPPTAPTRAAAPAARTAPP AEAPPVAPERKDAEPAQVATEAHPQMQAAQESPPQMQASRERPQPAALGLERAAPRPRPEPAVKRQPDKAQQQRAHERGT SFAALQGDLKLTVAGGGVKLSIAFREFPRSRRDRTPTKAEARRLQQVAPVTAKRDERTREAVIERAGEGVYIFSAEPETA SAAQASFTLTIYEAGKREKKAAIGTRTLQKKTVVARILMPEGVLWDDDSAFTGSLEDSDSTTKFNAQTGLYWKEYAD >Mature_396_residues TESSHKKRCCDETGSLCASLFLHGVLFLVLSSSSHIEPPLGAQTRLDILWFTPIAVPPPLQATPQAAPAATVKPRPQRQR PLGAKRPEAPPEALPAKAVPAAPMVLRIAAPSSPHPAPEHGTRPEQRASLAVKAPASPPPKPPTAPTRAAAPAARTAPPA EAPPVAPERKDAEPAQVATEAHPQMQAAQESPPQMQASRERPQPAALGLERAAPRPRPEPAVKRQPDKAQQQRAHERGTS FAALQGDLKLTVAGGGVKLSIAFREFPRSRRDRTPTKAEARRLQQVAPVTAKRDERTREAVIERAGEGVYIFSAEPETAS AAQASFTLTIYEAGKREKKAAIGTRTLQKKTVVARILMPEGVLWDDDSAFTGSLEDSDSTTKFNAQTGLYWKEYAD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 42634; Mature: 42503
Theoretical pI: Translated: 10.41; Mature: 10.41
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTESSHKKRCCDETGSLCASLFLHGVLFLVLSSSSHIEPPLGAQTRLDILWFTPIAVPPP CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCCC LQATPQAAPAATVKPRPQRQRPLGAKRPEAPPEALPAKAVPAAPMVLRIAAPSSPHPAPE CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCEEEEEECCCCCCCCCC HGTRPEQRASLAVKAPASPPPKPPTAPTRAAAPAARTAPPAEAPPVAPERKDAEPAQVAT CCCCCHHHCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH EAHPQMQAAQESPPQMQASRERPQPAALGLERAAPRPRPEPAVKRQPDKAQQQRAHERGT HCCHHHHHHHCCCCHHHHHHCCCCHHHHCHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCC SFAALQGDLKLTVAGGGVKLSIAFREFPRSRRDRTPTKAEARRLQQVAPVTAKRDERTRE CEEEEECCEEEEEECCCEEEEEEHHHCCHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHH AVIERAGEGVYIFSAEPETASAAQASFTLTIYEAGKREKKAAIGTRTLQKKTVVARILMP HHHHHCCCCEEEEECCCCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCC EGVLWDDDSAFTGSLEDSDSTTKFNAQTGLYWKEYAD CCEEECCCCCEECCCCCCCCCEEECCCCCCCCHHCCC >Mature Secondary Structure TESSHKKRCCDETGSLCASLFLHGVLFLVLSSSSHIEPPLGAQTRLDILWFTPIAVPPP CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCCC LQATPQAAPAATVKPRPQRQRPLGAKRPEAPPEALPAKAVPAAPMVLRIAAPSSPHPAPE CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCEEEEEECCCCCCCCCC HGTRPEQRASLAVKAPASPPPKPPTAPTRAAAPAARTAPPAEAPPVAPERKDAEPAQVAT CCCCCHHHCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH EAHPQMQAAQESPPQMQASRERPQPAALGLERAAPRPRPEPAVKRQPDKAQQQRAHERGT HCCHHHHHHHCCCCHHHHHHCCCCHHHHCHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCC SFAALQGDLKLTVAGGGVKLSIAFREFPRSRRDRTPTKAEARRLQQVAPVTAKRDERTRE CEEEEECCEEEEEECCCEEEEEEHHHCCHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHH AVIERAGEGVYIFSAEPETASAAQASFTLTIYEAGKREKKAAIGTRTLQKKTVVARILMP HHHHHCCCCEEEEECCCCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCC EGVLWDDDSAFTGSLEDSDSTTKFNAQTGLYWKEYAD CCEEECCCCCEECCCCCCCCCEEECCCCCCCCHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA