| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
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The map label for this gene is 197117394
Identifier: 197117394
GI number: 197117394
Start: 1162080
End: 1163321
Strand: Direct
Name: 197117394
Synonym: Gbem_1004
Alternate gene names: NA
Gene position: 1162080-1163321 (Clockwise)
Preceding gene: 197117393
Following gene: 197117395
Centisome position: 25.18
GC content: 62.08
Gene sequence:
>1242_bases ATGGCATTTATCAAACCGTTCAAAGCGGTACGCCCGAAGAAGGAGCTGGCCGAGAAAGTGGCCGCTCTCCCCTATGACGT CATGAACACCGAAGAGGCCATCGCGATGGCCGCCGGGAACCCGATGAGCTTTCTGCACATCTCCCGCCCCGAGATCGACC TGCCGCAGGGGACCGATGTCCACTCCGAAGGGGTCTACGTCAAGGGACATGAAAACCTGAAGGGTTTCCTGGCGCAGGGT GTGCTGGTTCAGGACGAAAGCGAGCAGTATTACGTCTACCGCCAGAAGATGGGGGGGATCACCCAGACCGGCTTGGTCGT CTGCGCCGGGGTGGATGACTATCAAAGCGGCACCATCAAGAAGCACGAGCTGACCCGCGCCGACAAGGAAGAGGACCGGG TGAAGCATATCGACGTTTTGAACGCCAACGACGAGCCGGTCTTTTACACCTACCGCAACAACCCCGGCATCACCCGGACC ATTGAAGAGGTCACCAAGGGGGAGCCGGTCTACGATTTCACCACCGACGACGGCGTCTCCCATGCCCTTTGGACCATCGC CGACCGCGCCCTCATCGACTCCCTGACCAGCAGCTTCGCGGCCATCCCGACCCTCTACGTCGCCGACGGCCACCACCGGA GCGCCGCGGCGAGCCGGGTGCGCGACCTCAGGAAGAACGCCAACGATAAGCACACCGGCAGCGAAGAGTACAACTACTTC CTCACCGTGATCTTCCCGGACAACGAGATGACCATCATGCCCTACAACCGCGTGTTGAAGGATCTCAACGGGCGGAGCGT GGCCGAGTACATGGCCCGGGTCGCGGAGCGCTTCGAGGTTACCCCGGTCTGCGGCCCGGTGAAGCCGGGCGAGCGGCACC AGTTCGGCATGTTCCTGGCCGGGAAGTGGTACGAACTCGTTCCCCGCGAGGAGTCCTTTTCCGAGACGGACCCGGTGGCG TCGATGGACGTCTCCATCCTCCAGGACAACCTGCTCAACCCGGTCCTCGGGGTGCGCAACCCGCGCACCGACCAGCGCAT CCATTTCGTGGGGGGGATCCGCGGGGTTGAGGAGCTGGAGAGGGTGGTGAATTCCGGAGAATACGAGGTCGCCTTCTCGC TCTTCCCGACCTCCATCGAGGAGCTTATGTCGCTGGCCGACGTGGACAAGATCATGCCGCCCAAGTCGACCTGGTTCGAA CCCAAACTCAGAAGCGGTCTGTTCATCCACATGCTCGACTAG
Upstream 100 bases:
>100_bases TTGCGTCCGAACCTTGCGTTTCGGACAGAGAGTGGCGCGCAAAACCGGGCGCGGCGCCAAGAACATAGAAGGTAGAAAAG AAGCTAAGACAGGAGCAGTT
Downstream 100 bases:
>100_bases AAAAACTGCTGTTCTCACCGACAAGAAGAACAAGACACAGACGGAGGAAGTAGATGCGCAACGTAGAGAAGTTCATCGTC GTTTTGCTGCTCCTGGCTGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 413; Mature: 412
Protein sequence:
>413_residues MAFIKPFKAVRPKKELAEKVAALPYDVMNTEEAIAMAAGNPMSFLHISRPEIDLPQGTDVHSEGVYVKGHENLKGFLAQG VLVQDESEQYYVYRQKMGGITQTGLVVCAGVDDYQSGTIKKHELTRADKEEDRVKHIDVLNANDEPVFYTYRNNPGITRT IEEVTKGEPVYDFTTDDGVSHALWTIADRALIDSLTSSFAAIPTLYVADGHHRSAAASRVRDLRKNANDKHTGSEEYNYF LTVIFPDNEMTIMPYNRVLKDLNGRSVAEYMARVAERFEVTPVCGPVKPGERHQFGMFLAGKWYELVPREESFSETDPVA SMDVSILQDNLLNPVLGVRNPRTDQRIHFVGGIRGVEELERVVNSGEYEVAFSLFPTSIEELMSLADVDKIMPPKSTWFE PKLRSGLFIHMLD
Sequences:
>Translated_413_residues MAFIKPFKAVRPKKELAEKVAALPYDVMNTEEAIAMAAGNPMSFLHISRPEIDLPQGTDVHSEGVYVKGHENLKGFLAQG VLVQDESEQYYVYRQKMGGITQTGLVVCAGVDDYQSGTIKKHELTRADKEEDRVKHIDVLNANDEPVFYTYRNNPGITRT IEEVTKGEPVYDFTTDDGVSHALWTIADRALIDSLTSSFAAIPTLYVADGHHRSAAASRVRDLRKNANDKHTGSEEYNYF LTVIFPDNEMTIMPYNRVLKDLNGRSVAEYMARVAERFEVTPVCGPVKPGERHQFGMFLAGKWYELVPREESFSETDPVA SMDVSILQDNLLNPVLGVRNPRTDQRIHFVGGIRGVEELERVVNSGEYEVAFSLFPTSIEELMSLADVDKIMPPKSTWFE PKLRSGLFIHMLD >Mature_412_residues AFIKPFKAVRPKKELAEKVAALPYDVMNTEEAIAMAAGNPMSFLHISRPEIDLPQGTDVHSEGVYVKGHENLKGFLAQGV LVQDESEQYYVYRQKMGGITQTGLVVCAGVDDYQSGTIKKHELTRADKEEDRVKHIDVLNANDEPVFYTYRNNPGITRTI EEVTKGEPVYDFTTDDGVSHALWTIADRALIDSLTSSFAAIPTLYVADGHHRSAAASRVRDLRKNANDKHTGSEEYNYFL TVIFPDNEMTIMPYNRVLKDLNGRSVAEYMARVAERFEVTPVCGPVKPGERHQFGMFLAGKWYELVPREESFSETDPVAS MDVSILQDNLLNPVLGVRNPRTDQRIHFVGGIRGVEELERVVNSGEYEVAFSLFPTSIEELMSLADVDKIMPPKSTWFEP KLRSGLFIHMLD
Specific function: Unknown
COG id: COG4198
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 46455; Mature: 46324
Theoretical pI: Translated: 5.04; Mature: 5.04
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAFIKPFKAVRPKKELAEKVAALPYDVMNTEEAIAMAAGNPMSFLHISRPEIDLPQGTDV CCCCCCHHHCCCHHHHHHHHHHCCHHHCCCHHHEEEECCCCEEEEEECCCCCCCCCCCCC HSEGVYVKGHENLKGFLAQGVLVQDESEQYYVYRQKMGGITQTGLVVCAGVDDYQSGTIK CCCCEEEECCCHHHHHHHCCEEEECCCCCEEEEEHHHCCCCCCCEEEEECCCCCCCCCEE KHELTRADKEEDRVKHIDVLNANDEPVFYTYRNNPGITRTIEEVTKGEPVYDFTTDDGVS HHHHHCCCCHHHHHEEEEEECCCCCEEEEEECCCCCCHHHHHHHHCCCCEEEECCCCCCH HALWTIADRALIDSLTSSFAAIPTLYVADGHHRSAAASRVRDLRKNANDKHTGSEEYNYF HHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEE LTVIFPDNEMTIMPYNRVLKDLNGRSVAEYMARVAERFEVTPVCGPVKPGERHQFGMFLA EEEEECCCCEEEEEHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEC GKWYELVPREESFSETDPVASMDVSILQDNLLNPVLGVRNPRTDQRIHFVGGIRGVEELE CCHHEECCCCCCCCCCCCCHHHHHHHHHHHHCCHHHCCCCCCCCCEEEEECCCCCHHHHH RVVNSGEYEVAFSLFPTSIEELMSLADVDKIMPPKSTWFEPKLRSGLFIHMLD HHHCCCCEEEEEEECHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCEEEEEEC >Mature Secondary Structure AFIKPFKAVRPKKELAEKVAALPYDVMNTEEAIAMAAGNPMSFLHISRPEIDLPQGTDV CCCCCHHHCCCHHHHHHHHHHCCHHHCCCHHHEEEECCCCEEEEEECCCCCCCCCCCCC HSEGVYVKGHENLKGFLAQGVLVQDESEQYYVYRQKMGGITQTGLVVCAGVDDYQSGTIK CCCCEEEECCCHHHHHHHCCEEEECCCCCEEEEEHHHCCCCCCCEEEEECCCCCCCCCEE KHELTRADKEEDRVKHIDVLNANDEPVFYTYRNNPGITRTIEEVTKGEPVYDFTTDDGVS HHHHHCCCCHHHHHEEEEEECCCCCEEEEEECCCCCCHHHHHHHHCCCCEEEECCCCCCH HALWTIADRALIDSLTSSFAAIPTLYVADGHHRSAAASRVRDLRKNANDKHTGSEEYNYF HHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEE LTVIFPDNEMTIMPYNRVLKDLNGRSVAEYMARVAERFEVTPVCGPVKPGERHQFGMFLA EEEEECCCCEEEEEHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEC GKWYELVPREESFSETDPVASMDVSILQDNLLNPVLGVRNPRTDQRIHFVGGIRGVEELE CCHHEECCCCCCCCCCCCCHHHHHHHHHHHHCCHHHCCCCCCCCCEEEEECCCCCHHHHH RVVNSGEYEVAFSLFPTSIEELMSLADVDKIMPPKSTWFEPKLRSGLFIHMLD HHHCCCCEEEEEEECHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA