Click here to switch to the map view.

The map label for this gene is ydhO [H]

Identifier: 197117393

GI number: 197117393

Start: 1161125

End: 1161934

Strand: Direct

Name: ydhO [H]

Synonym: Gbem_1003

Alternate gene names: 197117393

Gene position: 1161125-1161934 (Clockwise)

Preceding gene: 308535208

Following gene: 197117394

Centisome position: 25.16

GC content: 63.58

Gene sequence:

>810_bases
ATGTTCAAAAAAATTCACGTACTGGCCATCTGCCTGATGCTCCTGGCGCCGGCTGCCACCGGATGCGCCGCCCAGCGCGC
AGGACTTTCCAGCGTAGGCTATGCCATCCAGGTCGGGGCCTTCTCCGACGTCAAAAACGCCGAGCGCGTCACCCGCAAGC
TGCAGGAGCAGGGGATCGAGGCTTTCTACTTCAAGAAGGAGAACGGCATCTACGCCGTGCGCTTCGGCGACTTCCCCCGC
CGCGAGGACGCGAGGAAGGTGGCCCAGAAGCTGGTGAAGGACCGGGTGGTAACCTCGTATTTCATCGCCACGCCGCAGGC
CGAGCGGACCCCGGCGGTCCGCGAGCCCTCGCTGCACAAGACACCCTCTCCCTCCATCGCCAAGCCGCCGGCGCTGCCTA
GAAAAACCGAGGAATCCGTGGCCAAGCGCGACAGAAGCGACATGGGGGGGATCGCCGCCCGCACTGCCGAGCGCTTCGTC
GGGATCCCGTACCGTTGGGGCGGGGATACCGTCGTCGACGGCATGGACTGCAGCGGCTTCGTGCGCGCCGTCTACAACCT
GTGCGGCGTCAACATCCCCCGTACTTCACGGGAGCAGTACCGCGTGGGGGACGTGGTGGGGCGGGATGAGTTGAAGGACG
GCGACCTGGTATTTTTCGGCGGCTCCCCCGAGGAGATCAACCATGTGGGGATCTTCGTCGGCAACGGCCGTTTCGTCCAC
GCCCCGCGCAGGGGTGACGACATCAAGGTGAGTTCCATGGACGAGTCGTACTTCCAGAAGCGATTTATCGGCGCTAAAAG
GTATTTTTAA

Upstream 100 bases:

>100_bases
CCGGACGCCGTCCTCGACGGTTCCCTCGACGACTTCGTGGTCCCGTACCTTATGGGAGTGCGCCGGGAGACCAAGGATAT
TTAGGGTAAGGATTCATCCA

Downstream 100 bases:

>100_bases
GGAAAAGCCGCGTCATGCCGATAGGTTAATCGTAAGCCGCGCCGCTTGCGTCCGAACCTTGCGTTTCGGACAGAGAGTGG
CGCGCAAAACCGGGCGCGGC

Product: peptidoglycan-binding lipoprotein, SPOR/NLPC_P60 domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 269; Mature: 269

Protein sequence:

>269_residues
MFKKIHVLAICLMLLAPAATGCAAQRAGLSSVGYAIQVGAFSDVKNAERVTRKLQEQGIEAFYFKKENGIYAVRFGDFPR
REDARKVAQKLVKDRVVTSYFIATPQAERTPAVREPSLHKTPSPSIAKPPALPRKTEESVAKRDRSDMGGIAARTAERFV
GIPYRWGGDTVVDGMDCSGFVRAVYNLCGVNIPRTSREQYRVGDVVGRDELKDGDLVFFGGSPEEINHVGIFVGNGRFVH
APRRGDDIKVSSMDESYFQKRFIGAKRYF

Sequences:

>Translated_269_residues
MFKKIHVLAICLMLLAPAATGCAAQRAGLSSVGYAIQVGAFSDVKNAERVTRKLQEQGIEAFYFKKENGIYAVRFGDFPR
REDARKVAQKLVKDRVVTSYFIATPQAERTPAVREPSLHKTPSPSIAKPPALPRKTEESVAKRDRSDMGGIAARTAERFV
GIPYRWGGDTVVDGMDCSGFVRAVYNLCGVNIPRTSREQYRVGDVVGRDELKDGDLVFFGGSPEEINHVGIFVGNGRFVH
APRRGDDIKVSSMDESYFQKRFIGAKRYF
>Mature_269_residues
MFKKIHVLAICLMLLAPAATGCAAQRAGLSSVGYAIQVGAFSDVKNAERVTRKLQEQGIEAFYFKKENGIYAVRFGDFPR
REDARKVAQKLVKDRVVTSYFIATPQAERTPAVREPSLHKTPSPSIAKPPALPRKTEESVAKRDRSDMGGIAARTAERFV
GIPYRWGGDTVVDGMDCSGFVRAVYNLCGVNIPRTSREQYRVGDVVGRDELKDGDLVFFGGSPEEINHVGIFVGNGRFVH
APRRGDDIKVSSMDESYFQKRFIGAKRYF

Specific function: Unknown

COG id: COG0791

COG function: function code M; Cell wall-associated hydrolases (invasion-associated proteins)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nlpC/p60 family [H]

Homologues:

Organism=Escherichia coli, GI1787944, Length=112, Percent_Identity=45.5357142857143, Blast_Score=115, Evalue=3e-27,
Organism=Escherichia coli, GI1786421, Length=125, Percent_Identity=37.6, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1788501, Length=113, Percent_Identity=43.3628318584071, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1788001, Length=113, Percent_Identity=40.7079646017699, Blast_Score=77, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000064 [H]

Pfam domain/function: PF00877 NLPC_P60 [H]

EC number: NA

Molecular weight: Translated: 29843; Mature: 29843

Theoretical pI: Translated: 10.07; Mature: 10.07

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS00152 ATPASE_ALPHA_BETA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFKKIHVLAICLMLLAPAATGCAAQRAGLSSVGYAIQVGAFSDVKNAERVTRKLQEQGIE
CCCHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHHHHCCCE
AFYFKKENGIYAVRFGDFPRREDARKVAQKLVKDRVVTSYFIATPQAERTPAVREPSLHK
EEEEEECCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCC
TPSPSIAKPPALPRKTEESVAKRDRSDMGGIAARTAERFVGIPYRWGGDTVVDGMDCSGF
CCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCCEEECCCCEECCCCHHHH
VRAVYNLCGVNIPRTSREQYRVGDVVGRDELKDGDLVFFGGSPEEINHVGIFVGNGRFVH
HHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCCEEEECCCCCCCCEEEEEEECCEEEE
APRRGDDIKVSSMDESYFQKRFIGAKRYF
CCCCCCCEEEECCCHHHHHHHHHHHHCCC
>Mature Secondary Structure
MFKKIHVLAICLMLLAPAATGCAAQRAGLSSVGYAIQVGAFSDVKNAERVTRKLQEQGIE
CCCHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHHHHCCCE
AFYFKKENGIYAVRFGDFPRREDARKVAQKLVKDRVVTSYFIATPQAERTPAVREPSLHK
EEEEEECCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCC
TPSPSIAKPPALPRKTEESVAKRDRSDMGGIAARTAERFVGIPYRWGGDTVVDGMDCSGF
CCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCCEEECCCCEECCCCHHHH
VRAVYNLCGVNIPRTSREQYRVGDVVGRDELKDGDLVFFGGSPEEINHVGIFVGNGRFVH
HHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCCEEEECCCCCCCCEEEEEEECCEEEE
APRRGDDIKVSSMDESYFQKRFIGAKRYF
CCCCCCCEEEECCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]