| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
Click here to switch to the map view.
The map label for this gene is silP [H]
Identifier: 197116514
GI number: 197116514
Start: 137849
End: 140056
Strand: Reverse
Name: silP [H]
Synonym: Gbem_0114
Alternate gene names: 197116514
Gene position: 140056-137849 (Counterclockwise)
Preceding gene: 197116515
Following gene: 197116507
Centisome position: 3.03
GC content: 69.11
Gene sequence:
>2208_bases ATGCCTACGACAGCGGCCGCTAGCACCATGGAGCACTATTCTTGCGCGCACTGCGGACTCCCGGTGGCAACCCCCTCGCT TGGGAAAGCCCCCTCTACTCTCGACCGGCAGGAGATCTTCTGCTGCCACGCCTGCAGGCTGGTCTCCGCCATCGTCGGAA ACCGGCAGGGGGAGCAGGGGTGGCACCTGTTCCGGCTCGGCATCGGCGCGCTCCTGGCCATGAACGTGATGATGATTTCC CTGCTCCTCTACGCCGGGAGCGTGGAGACGCAGCTGATCCCCCTGTTCCGCCGCATACTCCTCGTGCTTTCCATCCCCGC CATGCTGATCCTGATCCCCCCGTTTCTTTCCGGCGCGCTACGCGAGATCTCGTCGCGGCGCTTTTGCCTCGACTTCCTCA TCGCGCTCGGATCCCTCTCCGCCTTCTCCCTGAGCGCGGTGAACGCGGTCGTCGGCTCCGGAGAGGTCTATTTCGACACC GCCACCATGCTTCCGGTGCTGGTTACCCTGGGAAAATTCATCGAGGCGTCGGTGAAAAGGAAGGCGAGCGAGCTCCTGGA AACACTGGAGACGCTGCTGCCGCGGACCGCGCTCCGGGTGACCGGGGAGGGGACCGACGAGGTGGCGCTGGACGCGCTGC AGCCGGGCGACCTGGTGCGGGTGCGGCCGGGCGAGCGAGTGGCGGTGGACGGCACCGTGGTGGAAGGGACGAGCAGCATC GAGGAGGCACCCTTCACCGGCGAGTTCCTCCCCAGGCTCTGCCGCAAAGGGGACGCGGTCACAGCCGGCACGGTGAACGG CCAGGGGACCCTGCTGTTGCGCGCCGACCGGACCGGGTCGCAGCTTTTATTGCACAGTATCGCCGACATGGTGCAGCAGG CCTGGCGCGCCCCTTCGCAGAGCGAGCGGCTGGCGCAGAAGGCGGCCATGCTTTTTCTGCCGGCGGTGCTCCTGGTCTCC GTCGGCGCGCTCATCTGCTGGTCATTCAAGGGCCTTCCCGACCAGGCGCTCCTGAGTGCGCTTTCCGTGCTGGTGGTCGC CTGCCCCTGCACCATGGGGATAGCCACCCCCCTTGCCACCTCGCTGGCCGTAGCCCGTGCCGCGCGCGCCGGCATCGTCG TGCGCGGCGGCAGCGTCATGGAGGGGATAGCCGGCACTGGTACAGTCTTCTTCGACAAGACCGGCACCGTCACCTCCGGC ACCCCGGTGCTGAGCGAGATGGAGCTGCTGGATCCGCTCACGACCCGCGCCGAACTGCTGGGGAGGCTGGCCGCCCTGGA ATCGGCAAGCGAGCACCCGCTGGCGGCGGCGGTCAAGGCCGCGGCGGCTGCCTGCGGCGCAGCCCCCGGCACCGCAACGC AGGTCGAGCTCTCGGCTGGGTGCGGCATCAGCGGCACGGTGACCTGGAAAGGGGTGGCGACGAGGATGTGGGCAGGAAAC GCCTCATGCGCCGACGGCGATGTGGGGTGCGAGGATCTGCCGGGGGAGGGTGCGGTGGTGTTCGCGGGGTGGGATGGGAG GCTCAGGGCGAGGCTTCATTTCGCCGATCCGCTCAAAGACGATGCGGCAAGCTCCCTGGACGCGCTGCACCGGTTGGGTT TGACGAGCGTGCTCCTCTCGGGCGACCGCTTTTCCTCGGCCCAGGTGGCGGCCAAGCGGCTGGGGATCCGCCGGGTCGAG GCCCCCTCCCCTCCGGACCGCAAGCTGGAGCTCATCGCCGGCTACATCGCCAAGGGGCGGAAGGTGGCCATGGTGGGGGA CGGGGTAAACGACGCGCCCGCCCTCGCCGCGGCCCAGACCGGGATCGCGCTCGGAACCGGGATGGAGCTCGCCCAGGTGG CGGGGAACGTGGTGATCCTGTCGGGGCGGCTGTCGCAAATTCCCTGGCTGATCGCGCTCAGCCGGCGCGCCGGGAACATC ATCCGCGGGAATCTCGCCTTAAGCTTCGCCTACAACGCGGTGGCGCTGGCCGCGGCGGCTGCAGGCCTGCTCCATCCGCT TCTGGCCGCGGTCGCCATGGTGGTCTCCAGCCTCACCGTGCTGGGAAACTCCCTGCGCATCGGCGCCTTTCCCGCCCCCT CCGCCCTCCCGGCACGAAGCCGGGAGACGGCGTCGCCGCAGCCTAAGGGCGTGTTGCCGGCGATGCCCCTTGAGGAGGCT CCGGCTGCGCAGGGTCGGTGTGCTGGTGCAGGTGGTTTTCCGGCGTGA
Upstream 100 bases:
>100_bases GGATCCGCCTTCTACCACAGGCTCCTCGGCTGCCCCCCCACCCCCGGGCCGCAGATAATCAGCGCCAGCGCTCATTCCGC GACCGGCGCCTGGAGGGGCG
Downstream 100 bases:
>100_bases AGAACTCGGTGACCGCGTCCGCGGCCACCGGGCGCGACACCAGGAAGCCCTGGATCTCGTGGCAACCCTGATCCTTTAGC TTCTCCAACTGGTCCACCGT
Product: heavy metal-translocating P-type ATPase
Products: ADP; Orthophosphate. [C]
Alternate protein names: NA
Number of amino acids: Translated: 735; Mature: 734
Protein sequence:
>735_residues MPTTAAASTMEHYSCAHCGLPVATPSLGKAPSTLDRQEIFCCHACRLVSAIVGNRQGEQGWHLFRLGIGALLAMNVMMIS LLLYAGSVETQLIPLFRRILLVLSIPAMLILIPPFLSGALREISSRRFCLDFLIALGSLSAFSLSAVNAVVGSGEVYFDT ATMLPVLVTLGKFIEASVKRKASELLETLETLLPRTALRVTGEGTDEVALDALQPGDLVRVRPGERVAVDGTVVEGTSSI EEAPFTGEFLPRLCRKGDAVTAGTVNGQGTLLLRADRTGSQLLLHSIADMVQQAWRAPSQSERLAQKAAMLFLPAVLLVS VGALICWSFKGLPDQALLSALSVLVVACPCTMGIATPLATSLAVARAARAGIVVRGGSVMEGIAGTGTVFFDKTGTVTSG TPVLSEMELLDPLTTRAELLGRLAALESASEHPLAAAVKAAAAACGAAPGTATQVELSAGCGISGTVTWKGVATRMWAGN ASCADGDVGCEDLPGEGAVVFAGWDGRLRARLHFADPLKDDAASSLDALHRLGLTSVLLSGDRFSSAQVAAKRLGIRRVE APSPPDRKLELIAGYIAKGRKVAMVGDGVNDAPALAAAQTGIALGTGMELAQVAGNVVILSGRLSQIPWLIALSRRAGNI IRGNLALSFAYNAVALAAAAAGLLHPLLAAVAMVVSSLTVLGNSLRIGAFPAPSALPARSRETASPQPKGVLPAMPLEEA PAAQGRCAGAGGFPA
Sequences:
>Translated_735_residues MPTTAAASTMEHYSCAHCGLPVATPSLGKAPSTLDRQEIFCCHACRLVSAIVGNRQGEQGWHLFRLGIGALLAMNVMMIS LLLYAGSVETQLIPLFRRILLVLSIPAMLILIPPFLSGALREISSRRFCLDFLIALGSLSAFSLSAVNAVVGSGEVYFDT ATMLPVLVTLGKFIEASVKRKASELLETLETLLPRTALRVTGEGTDEVALDALQPGDLVRVRPGERVAVDGTVVEGTSSI EEAPFTGEFLPRLCRKGDAVTAGTVNGQGTLLLRADRTGSQLLLHSIADMVQQAWRAPSQSERLAQKAAMLFLPAVLLVS VGALICWSFKGLPDQALLSALSVLVVACPCTMGIATPLATSLAVARAARAGIVVRGGSVMEGIAGTGTVFFDKTGTVTSG TPVLSEMELLDPLTTRAELLGRLAALESASEHPLAAAVKAAAAACGAAPGTATQVELSAGCGISGTVTWKGVATRMWAGN ASCADGDVGCEDLPGEGAVVFAGWDGRLRARLHFADPLKDDAASSLDALHRLGLTSVLLSGDRFSSAQVAAKRLGIRRVE APSPPDRKLELIAGYIAKGRKVAMVGDGVNDAPALAAAQTGIALGTGMELAQVAGNVVILSGRLSQIPWLIALSRRAGNI IRGNLALSFAYNAVALAAAAAGLLHPLLAAVAMVVSSLTVLGNSLRIGAFPAPSALPARSRETASPQPKGVLPAMPLEEA PAAQGRCAGAGGFPA >Mature_734_residues PTTAAASTMEHYSCAHCGLPVATPSLGKAPSTLDRQEIFCCHACRLVSAIVGNRQGEQGWHLFRLGIGALLAMNVMMISL LLYAGSVETQLIPLFRRILLVLSIPAMLILIPPFLSGALREISSRRFCLDFLIALGSLSAFSLSAVNAVVGSGEVYFDTA TMLPVLVTLGKFIEASVKRKASELLETLETLLPRTALRVTGEGTDEVALDALQPGDLVRVRPGERVAVDGTVVEGTSSIE EAPFTGEFLPRLCRKGDAVTAGTVNGQGTLLLRADRTGSQLLLHSIADMVQQAWRAPSQSERLAQKAAMLFLPAVLLVSV GALICWSFKGLPDQALLSALSVLVVACPCTMGIATPLATSLAVARAARAGIVVRGGSVMEGIAGTGTVFFDKTGTVTSGT PVLSEMELLDPLTTRAELLGRLAALESASEHPLAAAVKAAAAACGAAPGTATQVELSAGCGISGTVTWKGVATRMWAGNA SCADGDVGCEDLPGEGAVVFAGWDGRLRARLHFADPLKDDAASSLDALHRLGLTSVLLSGDRFSSAQVAAKRLGIRRVEA PSPPDRKLELIAGYIAKGRKVAMVGDGVNDAPALAAAQTGIALGTGMELAQVAGNVVILSGRLSQIPWLIALSRRAGNII RGNLALSFAYNAVALAAAAAGLLHPLLAAVAMVVSSLTVLGNSLRIGAFPAPSALPARSRETASPQPKGVLPAMPLEEAP AAQGRCAGAGGFPA
Specific function: Component of the sil cation-efflux system that confers resistance to silver [H]
COG id: COG2217
COG function: function code P; Cation transport ATPase
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IB subfamily [H]
Homologues:
Organism=Homo sapiens, GI55743071, Length=635, Percent_Identity=31.6535433070866, Blast_Score=270, Evalue=3e-72, Organism=Homo sapiens, GI55743073, Length=564, Percent_Identity=31.3829787234043, Blast_Score=228, Evalue=2e-59, Organism=Homo sapiens, GI115529486, Length=444, Percent_Identity=28.8288288288288, Blast_Score=187, Evalue=3e-47, Organism=Escherichia coli, GI1786691, Length=623, Percent_Identity=34.1894060995185, Blast_Score=271, Evalue=2e-73, Organism=Escherichia coli, GI1789879, Length=591, Percent_Identity=28.9340101522843, Blast_Score=182, Evalue=5e-47, Organism=Escherichia coli, GI1786914, Length=561, Percent_Identity=27.6292335115865, Blast_Score=119, Evalue=8e-28, Organism=Caenorhabditis elegans, GI17556548, Length=402, Percent_Identity=33.0845771144279, Blast_Score=165, Evalue=1e-40, Organism=Saccharomyces cerevisiae, GI6319772, Length=667, Percent_Identity=29.8350824587706, Blast_Score=241, Evalue=2e-64, Organism=Saccharomyces cerevisiae, GI6320475, Length=682, Percent_Identity=27.8592375366569, Blast_Score=217, Evalue=6e-57, Organism=Drosophila melanogaster, GI221329854, Length=440, Percent_Identity=32.7272727272727, Blast_Score=173, Evalue=5e-43,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008250 - InterPro: IPR006403 - InterPro: IPR006416 - InterPro: IPR001757 - InterPro: IPR018303 - InterPro: IPR005834 - InterPro: IPR023214 - InterPro: IPR007029 [H]
Pfam domain/function: PF00122 E1-E2_ATPase; PF00702 Hydrolase; PF04945 YHS [H]
EC number: 3.6.3.4 [C]
Molecular weight: Translated: 75822; Mature: 75691
Theoretical pI: Translated: 7.92; Mature: 7.92
Prosite motif: PS00154 ATPASE_E1_E2 ; PS01229 COF_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPTTAAASTMEHYSCAHCGLPVATPSLGKAPSTLDRQEIFCCHACRLVSAIVGNRQGEQG CCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCC WHLFRLGIGALLAMNVMMISLLLYAGSVETQLIPLFRRILLVLSIPAMLILIPPFLSGAL HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH REISSRRFCLDFLIALGSLSAFSLSAVNAVVGSGEVYFDTATMLPVLVTLGKFIEASVKR HHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHHHHH KASELLETLETLLPRTALRVTGEGTDEVALDALQPGDLVRVRPGERVAVDGTVVEGTSSI HHHHHHHHHHHHCCCCEEEEECCCCCHHHHHCCCCCCEEEECCCCEEEECCEEECCCCCH EEAPFTGEFLPRLCRKGDAVTAGTVNGQGTLLLRADRTGSQLLLHSIADMVQQAWRAPSQ HCCCCCHHHHHHHHCCCCCEEEEEECCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCH SERLAQKAAMLFLPAVLLVSVGALICWSFKGLPDQALLSALSVLVVACPCTMGIATPLAT HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHH SLAVARAARAGIVVRGGSVMEGIAGTGTVFFDKTGTVTSGTPVLSEMELLDPLTTRAELL HHHHHHHHHCCEEEECCHHHHCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHH GRLAALESASEHPLAAAVKAAAAACGAAPGTATQVELSAGCGISGTVTWKGVATRMWAGN HHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCEEEECCCEEEEECCC ASCADGDVGCEDLPGEGAVVFAGWDGRLRARLHFADPLKDDAASSLDALHRLGLTSVLLS CCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEEECCCCCHHHHHHHHHHHHHCHHHHHCC GDRFSSAQVAAKRLGIRRVEAPSPPDRKLELIAGYIAKGRKVAMVGDGVNDAPALAAAQT CCCCCHHHHHHHHHCCEECCCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHC GIALGTGMELAQVAGNVVILSGRLSQIPWLIALSRRAGNIIRGNLALSFAYNAVALAAAA CCEECCCCHHHHHCCCEEEEECCCCCCCEEEEECCCCCCEEECCEEEEHHHHHHHHHHHH AGLLHPLLAAVAMVVSSLTVLGNSLRIGAFPAPSALPARSRETASPQPKGVLPAMPLEEA HHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC PAAQGRCAGAGGFPA CCCCCCCCCCCCCCC >Mature Secondary Structure PTTAAASTMEHYSCAHCGLPVATPSLGKAPSTLDRQEIFCCHACRLVSAIVGNRQGEQG CCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCC WHLFRLGIGALLAMNVMMISLLLYAGSVETQLIPLFRRILLVLSIPAMLILIPPFLSGAL HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH REISSRRFCLDFLIALGSLSAFSLSAVNAVVGSGEVYFDTATMLPVLVTLGKFIEASVKR HHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHHHHH KASELLETLETLLPRTALRVTGEGTDEVALDALQPGDLVRVRPGERVAVDGTVVEGTSSI HHHHHHHHHHHHCCCCEEEEECCCCCHHHHHCCCCCCEEEECCCCEEEECCEEECCCCCH EEAPFTGEFLPRLCRKGDAVTAGTVNGQGTLLLRADRTGSQLLLHSIADMVQQAWRAPSQ HCCCCCHHHHHHHHCCCCCEEEEEECCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCH SERLAQKAAMLFLPAVLLVSVGALICWSFKGLPDQALLSALSVLVVACPCTMGIATPLAT HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHH SLAVARAARAGIVVRGGSVMEGIAGTGTVFFDKTGTVTSGTPVLSEMELLDPLTTRAELL HHHHHHHHHCCEEEECCHHHHCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHH GRLAALESASEHPLAAAVKAAAAACGAAPGTATQVELSAGCGISGTVTWKGVATRMWAGN HHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCEEEECCCEEEEECCC ASCADGDVGCEDLPGEGAVVFAGWDGRLRARLHFADPLKDDAASSLDALHRLGLTSVLLS CCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEEECCCCCHHHHHHHHHHHHHCHHHHHCC GDRFSSAQVAAKRLGIRRVEAPSPPDRKLELIAGYIAKGRKVAMVGDGVNDAPALAAAQT CCCCCHHHHHHHHHCCEECCCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHC GIALGTGMELAQVAGNVVILSGRLSQIPWLIALSRRAGNIIRGNLALSFAYNAVALAAAA CCEECCCCHHHHHCCCEEEEECCCCCCCEEEEECCCCCCEEECCEEEEHHHHHHHHHHHH AGLLHPLLAAVAMVVSSLTVLGNSLRIGAFPAPSALPARSRETASPQPKGVLPAMPLEEA HHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC PAAQGRCAGAGGFPA CCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: Cu [C]
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; H2O [C]
Specific reaction: ATP + H2O = ADP + Orthophosphate. [C]
General reaction: Phosphorous acid anhydride hydrolysis [C]
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9930866 [H]