| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
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The map label for this gene is albA [H]
Identifier: 197116415
GI number: 197116415
Start: 21667
End: 22743
Strand: Direct
Name: albA [H]
Synonym: Gbem_0015
Alternate gene names: 197116415
Gene position: 21667-22743 (Clockwise)
Preceding gene: 197116414
Following gene: 197116416
Centisome position: 0.47
GC content: 60.54
Gene sequence:
>1077_bases ATGGCCGAAGAGTTCGTACCCAAATGGATCGCCTGGGAGACCACCCAGCGCTGCAACCTCAAATGCGTCCACTGCCGCTG CTCGTCCGAGTTGACCTCCTCCGAAGGTGATTTCAGCACCGAAGAAGGGAAGAAGCTACTGAAGGAGATCTCCGACTTCT CGAAGCCGGTCGTGGTCCTTTCCGGCGGCGAGCCGCTGATGAGGCCGGACATCTTCGAACTGGCGGAGTACGGCACCTCG CTCGGCCTCAGGATGTGCATGGCGAGCAACGGTTCGCTCGTGACCGACGAGGTCTGCGAGAAGATGAAGAAGGCCGACAT CAAGATGGTCTCTCTTTCGCTGGACGGCTCGACTGCCGAGGTTCACGACAACTTCCGCCAGTGCCCCGGTTCCTTCGAGG GGGTACTGCGCGCGGCCGAACTCTTCAGGAAGCACGGCCAGAAGTTCCTGATCAATTCCTCCTTCACCAAGAGGAACCAG CACGACATCGCCAGCACCTTCAAGGTGGCGAAGTCCCTGGGTGCTACCGCCTGGTACATGTTCATGATCGTTCCCACCGG CCGCGGCGAGGACATCATGAGCGAGCTGATCTCCAAGGAGGACTACGAGGAGATTCTCGACTGGCACTACCACCAGGAGA AGAACGAGGACGACATCCTGATGCGCCCCACCTGCGCGCCGCACTACTACCGCATCGTGCCGCAAAAGGCCAAGGCGGAA GGGGAGAAGTTCGAGCGCCGCTCGCTCACCTTCTCCACCGGCGGCGGCAAGGGTTGCATCGCGGCGCAGACCATCTGCCT CATCGACTGCTACGGGAACCTGAAGCCCTGCTCCTACTTCCACCGCACCGCCGGCAACGTGAAGGAAACCCCGTTCCGCG AGCTCTGGGAGAACTCGGAGATCTTCAAAGACCTGAGGGACTTCAAGAGCTACAAGGGGAAATGCGGCGAGTGCGAGTAC CTGAACGTCTGCGGCGGCTGCCGGGCCCGCGCCGATGCGGTGCACGGCGACTACATGGAAGAGGAACCGTTCTGCAACTA CGTCCCGATCAAGCTGCAGAAAAAGCAGAAAGATTAG
Upstream 100 bases:
>100_bases CCGCAGAGCCTACCGTTTTGGCGTGAAATTTTTTCCTGCCTGACTGATGCGCCCCCCGCCACATGTAACGCTTTTCCAGG GCCAAATTATTGGAGATGCC
Downstream 100 bases:
>100_bases CTGCTGTTCAAGGTTCGACGTTCTACGTTGAAAACCGATAGCCCCCTGCCCTGCAGCGTCCCCTGTCCCTCTGGGAGAGG GACAGGGTGAGGGACGTTTT
Product: radical SAM protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 358; Mature: 357
Protein sequence:
>358_residues MAEEFVPKWIAWETTQRCNLKCVHCRCSSELTSSEGDFSTEEGKKLLKEISDFSKPVVVLSGGEPLMRPDIFELAEYGTS LGLRMCMASNGSLVTDEVCEKMKKADIKMVSLSLDGSTAEVHDNFRQCPGSFEGVLRAAELFRKHGQKFLINSSFTKRNQ HDIASTFKVAKSLGATAWYMFMIVPTGRGEDIMSELISKEDYEEILDWHYHQEKNEDDILMRPTCAPHYYRIVPQKAKAE GEKFERRSLTFSTGGGKGCIAAQTICLIDCYGNLKPCSYFHRTAGNVKETPFRELWENSEIFKDLRDFKSYKGKCGECEY LNVCGGCRARADAVHGDYMEEEPFCNYVPIKLQKKQKD
Sequences:
>Translated_358_residues MAEEFVPKWIAWETTQRCNLKCVHCRCSSELTSSEGDFSTEEGKKLLKEISDFSKPVVVLSGGEPLMRPDIFELAEYGTS LGLRMCMASNGSLVTDEVCEKMKKADIKMVSLSLDGSTAEVHDNFRQCPGSFEGVLRAAELFRKHGQKFLINSSFTKRNQ HDIASTFKVAKSLGATAWYMFMIVPTGRGEDIMSELISKEDYEEILDWHYHQEKNEDDILMRPTCAPHYYRIVPQKAKAE GEKFERRSLTFSTGGGKGCIAAQTICLIDCYGNLKPCSYFHRTAGNVKETPFRELWENSEIFKDLRDFKSYKGKCGECEY LNVCGGCRARADAVHGDYMEEEPFCNYVPIKLQKKQKD >Mature_357_residues AEEFVPKWIAWETTQRCNLKCVHCRCSSELTSSEGDFSTEEGKKLLKEISDFSKPVVVLSGGEPLMRPDIFELAEYGTSL GLRMCMASNGSLVTDEVCEKMKKADIKMVSLSLDGSTAEVHDNFRQCPGSFEGVLRAAELFRKHGQKFLINSSFTKRNQH DIASTFKVAKSLGATAWYMFMIVPTGRGEDIMSELISKEDYEEILDWHYHQEKNEDDILMRPTCAPHYYRIVPQKAKAEG EKFERRSLTFSTGGGKGCIAAQTICLIDCYGNLKPCSYFHRTAGNVKETPFRELWENSEIFKDLRDFKSYKGKCGECEYL NVCGGCRARADAVHGDYMEEEPFCNYVPIKLQKKQKD
Specific function: Required for production of the bacteriocin subtilosin. May activate a metalloenzyme that catalyzes a modification of prosubtilosin [H]
COG id: COG0535
COG function: function code R; Predicted Fe-S oxidoreductases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006638 - InterPro: IPR008792 - InterPro: IPR007197 [H]
Pfam domain/function: PF05402 PqqD; PF04055 Radical_SAM [H]
EC number: NA
Molecular weight: Translated: 40659; Mature: 40528
Theoretical pI: Translated: 6.42; Mature: 6.42
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
4.7 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 7.8 %Cys+Met (Translated Protein) 4.8 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 7.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAEEFVPKWIAWETTQRCNLKCVHCRCSSELTSSEGDFSTEEGKKLLKEISDFSKPVVVL CCCHHCCHHHHHCCCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEE SGGEPLMRPDIFELAEYGTSLGLRMCMASNGSLVTDEVCEKMKKADIKMVSLSLDGSTAE ECCCCCCCCHHHHHHHHHHHHHHHHEECCCCCEEHHHHHHHHHHCCEEEEEEEECCCHHH VHDNFRQCPGSFEGVLRAAELFRKHGQKFLINSSFTKRNQHDIASTFKVAKSLGATAWYM HHHHHHHCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEE FMIVPTGRGEDIMSELISKEDYEEILDWHYHQEKNEDDILMRPTCAPHYYRIVPQKAKAE EEEEECCCCHHHHHHHHCCCCHHHHHHHHHHCCCCCCCEEECCCCCCCCEEECCCHHHHC GEKFERRSLTFSTGGGKGCIAAQTICLIDCYGNLKPCSYFHRTAGNVKETPFRELWENSE CHHHHHHEEEEECCCCCCCHHHHEEEEEECCCCCCCHHHHHHHCCCCCCCCHHHHHCCHH IFKDLRDFKSYKGKCGECEYLNVCGGCRARADAVHGDYMEEEPFCNYVPIKLQKKQKD HHHHHHHHHHHCCCCCCCCEEECCCCCCHHHHHHCCCCCCCCCCCCCCCEEECCCCCC >Mature Secondary Structure AEEFVPKWIAWETTQRCNLKCVHCRCSSELTSSEGDFSTEEGKKLLKEISDFSKPVVVL CCHHCCHHHHHCCCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEE SGGEPLMRPDIFELAEYGTSLGLRMCMASNGSLVTDEVCEKMKKADIKMVSLSLDGSTAE ECCCCCCCCHHHHHHHHHHHHHHHHEECCCCCEEHHHHHHHHHHCCEEEEEEEECCCHHH VHDNFRQCPGSFEGVLRAAELFRKHGQKFLINSSFTKRNQHDIASTFKVAKSLGATAWYM HHHHHHHCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEE FMIVPTGRGEDIMSELISKEDYEEILDWHYHQEKNEDDILMRPTCAPHYYRIVPQKAKAE EEEEECCCCHHHHHHHHCCCCHHHHHHHHHHCCCCCCCEEECCCCCCCCEEECCCHHHHC GEKFERRSLTFSTGGGKGCIAAQTICLIDCYGNLKPCSYFHRTAGNVKETPFRELWENSE CHHHHHHEEEEECCCCCCCHHHHEEEEEECCCCCCCHHHHHHHCCCCCCCCHHHHHCCHH IFKDLRDFKSYKGKCGECEYLNVCGGCRARADAVHGDYMEEEPFCNYVPIKLQKKQKD HHHHHHHHHHHCCCCCCCCEEECCCCCCHHHHHHCCCCCCCCCCCCCCCEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9353933; 9384377; 10572140; 10809709; 10809710 [H]