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The map label for this gene is nodJ [H]

Identifier: 197116414

GI number: 197116414

Start: 20695

End: 21450

Strand: Direct

Name: nodJ [H]

Synonym: Gbem_0014

Alternate gene names: 197116414

Gene position: 20695-21450 (Clockwise)

Preceding gene: 197116413

Following gene: 197116415

Centisome position: 0.45

GC content: 60.19

Gene sequence:

>756_bases
ATGTTCAAAGGCGCGTTTTCCATCTGGAGCAGGGACATGATGGTGCTGAGGCGGAGCATCTTTTCCGAACTCGTAGCCGT
CATAGCCTACCCCCTCACCCTCTACCTCGCCTTCGGCTTCGGCCTCAAGGGGTACATCACAGACGTGAGCGGCGTCCCCT
ACCCCCTCTTCATAGCGCCCGGCCTCATCTCCATGACGGCGATCAACGCCGCCTTCGACGAAAGCTCCTGGAGCATGTGG
TTCCACCGCCGGGTGCAGCGCACCATAGAGGAGTACCGGGTCACCCCTATCACGGTCTACGACATCGTCATCGGCAAGAT
CCTCTCCGGTTTCTCTCAGGGGGCAGTCAAAGGCACCGTCGTCTTCCTGGTGATCCTCCTTTTGACCCCCTTCCGTATCG
ACTACGGCCACCTCCCCGTCTACCTCATGTGCATCGCCATCTCGTCCATGACCTTCTCCTGCCTGGGAACCATCTGCGGC
ACGGTGATCGACAAGCCGGAGAATATCGGGCGGGTGCAGTCGGTGGTTATCGTCCCTCTCATCTTCATGGCCGGCATCTT
CTTCCCCCTTTCCTCCTATCCCGCTTCCATCCGCCCCTTCATCGAACTCCTCCCGACGACGGCAGTCTTCGAAGGGGCGC
GGGACGCGCTCTTACAGGGATCCGTCCCCGCACCCTACCTGATCAACCTGGTAGCCACCGCAGCCGTATCGTTCCTGGTG
GCGGTCTACACCTTCGACCGCAAGATGGCTGAATAA

Upstream 100 bases:

>100_bases
CATCCGCAGGATCTGCCTCAAGGAGCCGAGCCTGGAGGAGGTCTTCATCTCGCTCACCGGGGAAAAATTGCGGGAGTGAA
CCCGTTGAACGGAGGGGTTA

Downstream 100 bases:

>100_bases
GCGATTCTTCTTGAGTTTCCCATTAATTTCATAGTAAAGTTTGCCCTAAACTTTGTAACCTCCTGGATGCCTCTGCAGCG
CTTTTGGCGCGAAGACGGCA

Product: ABC transporter membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 251; Mature: 251

Protein sequence:

>251_residues
MFKGAFSIWSRDMMVLRRSIFSELVAVIAYPLTLYLAFGFGLKGYITDVSGVPYPLFIAPGLISMTAINAAFDESSWSMW
FHRRVQRTIEEYRVTPITVYDIVIGKILSGFSQGAVKGTVVFLVILLLTPFRIDYGHLPVYLMCIAISSMTFSCLGTICG
TVIDKPENIGRVQSVVIVPLIFMAGIFFPLSSYPASIRPFIELLPTTAVFEGARDALLQGSVPAPYLINLVATAAVSFLV
AVYTFDRKMAE

Sequences:

>Translated_251_residues
MFKGAFSIWSRDMMVLRRSIFSELVAVIAYPLTLYLAFGFGLKGYITDVSGVPYPLFIAPGLISMTAINAAFDESSWSMW
FHRRVQRTIEEYRVTPITVYDIVIGKILSGFSQGAVKGTVVFLVILLLTPFRIDYGHLPVYLMCIAISSMTFSCLGTICG
TVIDKPENIGRVQSVVIVPLIFMAGIFFPLSSYPASIRPFIELLPTTAVFEGARDALLQGSVPAPYLINLVATAAVSFLV
AVYTFDRKMAE
>Mature_251_residues
MFKGAFSIWSRDMMVLRRSIFSELVAVIAYPLTLYLAFGFGLKGYITDVSGVPYPLFIAPGLISMTAINAAFDESSWSMW
FHRRVQRTIEEYRVTPITVYDIVIGKILSGFSQGAVKGTVVFLVILLLTPFRIDYGHLPVYLMCIAISSMTFSCLGTICG
TVIDKPENIGRVQSVVIVPLIFMAGIFFPLSSYPASIRPFIELLPTTAVFEGARDALLQGSVPAPYLINLVATAAVSFLV
AVYTFDRKMAE

Specific function: Part of the ABC transporter complex nodIJ involved in the export of the nodulation factors (Nod factors), the bacterial signal molecules that induce symbiosis and subsequent nodulation induction. Nod factors are LCO (lipo-chitin oligosaccharide), a modifi

COG id: COG0842

COG function: function code V; ABC-type multidrug transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-2 domain [H]

Homologues:

Organism=Escherichia coli, GI1786320, Length=213, Percent_Identity=27.6995305164319, Blast_Score=82, Evalue=4e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000412
- InterPro:   IPR013526
- InterPro:   IPR013525
- InterPro:   IPR005981 [H]

Pfam domain/function: PF01061 ABC2_membrane [H]

EC number: NA

Molecular weight: Translated: 27698; Mature: 27698

Theoretical pI: Translated: 8.42; Mature: 8.42

Prosite motif: PS51012 ABC_TM2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHCC
>Mature Secondary Structure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HHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]