| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
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The map label for this gene is gyrB [H]
Identifier: 197116406
GI number: 197116406
Start: 4120
End: 6510
Strand: Direct
Name: gyrB [H]
Synonym: Gbem_0004
Alternate gene names: 197116406
Gene position: 4120-6510 (Clockwise)
Preceding gene: 197116405
Following gene: 197116407
Centisome position: 0.09
GC content: 60.14
Gene sequence:
>2391_bases ATGAACTCAGAAGAACAGGGCGATTACGGGGCAGATAAGATCCAGATACTGGAAGGACTGGAAGCGGTACGAAAACGTCC GGCCATGTACATCGGTTCCACAGCCGCTCAGGGTTTGCATCACCTGGTGTACGAACTGGTGGATAACGCGATCGACGAGG CGCTGGCCGGCTACTGCGACGCGGTCCAGGTCATCATCCATTTGGACGGCTCGGTGACGGTCGAGGACAACGGCCGCGGC ATACCGACCGACATGCACCCGACCGAGGGTAGGTCGGCGGCGGAGGTCGTCCTCACCGTCTTGCACGCCGGCGGCAAGTT CGACAACACCTCCTACAAGGTCTCGGGCGGCCTGCACGGCGTCGGCAGTTCCGTCGTCAACGCGCTTTCCACCCGGCTCG ACCTGGAGATCCGCAGAAACGGCCACGTCCACACCCAGACCTACCGCAAGGGTGTCCCCCAGGCTCCGCTGGAGATAACC GGCGAGACCAAGAGGCGCGGCACCAAGATCACCTTCTTCCCCGACGGGGAGATCTTCGAGACCACCGAGTTCTCCTTCGA CGTACTCTCCAAGAGGCTCAGGGAGCTCGCCTTCCTGAACGCCGGCGTCCGGATCAAGATCCACGACGAGCGTACCGAGA AGGATCACGATTTCTTCTACGAGGGGGGAATCAGGAGCTTCGTCGAGTACCTCAACAAGAACAAGAACCTGGTCAACCCC GAGCCGATCTACATCAGGGGTGAGAAAAGCGGCGTCGATATTGAGATCGCCATGCAGTACAACGACTCCTACGACGAGAA GGTCTTCTCCTTCGCCAACAACATCAACACCCACGAGGGTGGCACCCACCTGGTCGGATTCAAGGCGTCCTTGACCCGCA CCATGAACACCTACGCCACAGCCAACAACCTCTTGAAAAACGTGAAGGTGGCGATCTCCGGCGACGACCTCCGCGAGGGT CTCACCGCGGTCATCTCGGTGAAGATCTCGCAACCGCAGTTCGAGGGGCAGACCAAGACCAAGCTGGGGAACTCGGAGGT GAAGGGGTACGTCGAGACCCTCATGAACGAGAAGCTCGCCACCTACCTGGAAGAAAACCCGGCCATGGCGAGGAAGATCC TGGAGAAATCCATCGACGCGGCCCGGGCCCGCGAGGCGGCCAGAAAGGCGCGTGAGTTGACCCGCCGCAAAGGCGCGCTC GAAGTGGGGACGCTGCCGGGGAAACTGGCCGACTGCCAGGAGAAGGACCCAGCGCTTTGCGAACTGTTCCTGGTCGAGGG CGACTCCGCAGGCGGCTCCGCCAAGCAGGGGCGCGACAGGAAGTACCAGGCGATCCTCCCCCTGAAGGGGAAGATCCTCA ACGTCGAGAAGGCGCGTTTCGACAAGATGCTTGCTTCCCAGGAGATCAGGACCCTGATCTCGGCGCTCGGCACCAGCATC GGCAAGGAAGACTTCGACATGGCGAAGCTTCGTTACCACCGCATCATCGTCATGACCGATGCGGACGTCGACGGCTCGCA CATCCTCACCCTGCTTCTGACCTTCTTCTTCCGCCAGATGCTGGAGCTCATCGAGCGCGGCTACCTCTACATCGCGCAGC CGCCTTTGTACAAGATCAAGCGCGGCAGGAAAGAACAGTACTTGAAGAACGAGGCGGCCCTGCAGGCCTACCTCCTCGAG GAAGGGACCGAGGAGATGACGCTGAAACTAGGTGTGGGGAACGACGAGCGGGTCTACCGCGGCAAACAGATCATCCCAAT CCTGACCCAGCTGATCGACTACAACGAACTGTTCGACAAGGTGGTGAAGAAGGGGATCAACGACGAACTCTTGCGCGTGT TCCTGAAGACCGGCATCAAGCCGGGCCTGGAAGAGATGGCCGACCTGATCGCCCTCTTGCCGAAGATGAAGGAGGCCTTC CCCGAGGTGACCACCGAGGAGTTCGGCGACAGCATCATCTTCGCCTTCGGCAACTTGAGGGTGAAGATAGACCACCAGAT CTTCTCGGTGCTCGAGTCCTACGAGTACGGCATGCTGCTGGAGAACCACAAGCGGATGCGTTCGGTCATGGGGGCAGGCA CAGGGGTCGTTTTGGGCGCCGAAGACAAGCTGGTGCTCGAAACTGAGAACCAGGAGGATATCCTCTCCTTCTTCATGGAA AGCGCCAAGAAGGGTCTCTACATCCAGCGCTACAAAGGTTTGGGCGAGATGAACCCGGAGCAGCTCTGGGAGACCACCAT GCACCAGGAGAACAGGGTGCTTCTGCAGGTGAAGATCGAGGACGCGGTGGCCGCCGAAGAGATCTTCACCGTGCTCATGG GGGACCAAGTCGAGCCGCGGCGCGATTTCATCGAGCAGAACGCGCTGAACGTCTCCAACCTGGACATCTAA
Upstream 100 bases:
>100_bases TCATCACCACGACGTCGCTCCATAACGTGGACATCGACGAACTGCAGGACAACAGGACGTTTCGCATCAAAGAGGGAAAA ATTCTCGACTAGGGGTAAAG
Downstream 100 bases:
>100_bases AAATTTTTCGCCCTCCCTGCGGGAGGAAACGGTTCAGAGTTTGAGCAAGAAGTGTCAGTTAAAAGACCGGATTGTCGGAT TTTTTAACAGTTATGGCATC
Product: DNA gyrase subunit B
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 796; Mature: 796
Protein sequence:
>796_residues MNSEEQGDYGADKIQILEGLEAVRKRPAMYIGSTAAQGLHHLVYELVDNAIDEALAGYCDAVQVIIHLDGSVTVEDNGRG IPTDMHPTEGRSAAEVVLTVLHAGGKFDNTSYKVSGGLHGVGSSVVNALSTRLDLEIRRNGHVHTQTYRKGVPQAPLEIT GETKRRGTKITFFPDGEIFETTEFSFDVLSKRLRELAFLNAGVRIKIHDERTEKDHDFFYEGGIRSFVEYLNKNKNLVNP EPIYIRGEKSGVDIEIAMQYNDSYDEKVFSFANNINTHEGGTHLVGFKASLTRTMNTYATANNLLKNVKVAISGDDLREG LTAVISVKISQPQFEGQTKTKLGNSEVKGYVETLMNEKLATYLEENPAMARKILEKSIDAARAREAARKARELTRRKGAL EVGTLPGKLADCQEKDPALCELFLVEGDSAGGSAKQGRDRKYQAILPLKGKILNVEKARFDKMLASQEIRTLISALGTSI GKEDFDMAKLRYHRIIVMTDADVDGSHILTLLLTFFFRQMLELIERGYLYIAQPPLYKIKRGRKEQYLKNEAALQAYLLE EGTEEMTLKLGVGNDERVYRGKQIIPILTQLIDYNELFDKVVKKGINDELLRVFLKTGIKPGLEEMADLIALLPKMKEAF PEVTTEEFGDSIIFAFGNLRVKIDHQIFSVLESYEYGMLLENHKRMRSVMGAGTGVVLGAEDKLVLETENQEDILSFFME SAKKGLYIQRYKGLGEMNPEQLWETTMHQENRVLLQVKIEDAVAAEEIFTVLMGDQVEPRRDFIEQNALNVSNLDI
Sequences:
>Translated_796_residues MNSEEQGDYGADKIQILEGLEAVRKRPAMYIGSTAAQGLHHLVYELVDNAIDEALAGYCDAVQVIIHLDGSVTVEDNGRG IPTDMHPTEGRSAAEVVLTVLHAGGKFDNTSYKVSGGLHGVGSSVVNALSTRLDLEIRRNGHVHTQTYRKGVPQAPLEIT GETKRRGTKITFFPDGEIFETTEFSFDVLSKRLRELAFLNAGVRIKIHDERTEKDHDFFYEGGIRSFVEYLNKNKNLVNP EPIYIRGEKSGVDIEIAMQYNDSYDEKVFSFANNINTHEGGTHLVGFKASLTRTMNTYATANNLLKNVKVAISGDDLREG LTAVISVKISQPQFEGQTKTKLGNSEVKGYVETLMNEKLATYLEENPAMARKILEKSIDAARAREAARKARELTRRKGAL EVGTLPGKLADCQEKDPALCELFLVEGDSAGGSAKQGRDRKYQAILPLKGKILNVEKARFDKMLASQEIRTLISALGTSI GKEDFDMAKLRYHRIIVMTDADVDGSHILTLLLTFFFRQMLELIERGYLYIAQPPLYKIKRGRKEQYLKNEAALQAYLLE EGTEEMTLKLGVGNDERVYRGKQIIPILTQLIDYNELFDKVVKKGINDELLRVFLKTGIKPGLEEMADLIALLPKMKEAF PEVTTEEFGDSIIFAFGNLRVKIDHQIFSVLESYEYGMLLENHKRMRSVMGAGTGVVLGAEDKLVLETENQEDILSFFME SAKKGLYIQRYKGLGEMNPEQLWETTMHQENRVLLQVKIEDAVAAEEIFTVLMGDQVEPRRDFIEQNALNVSNLDI >Mature_796_residues MNSEEQGDYGADKIQILEGLEAVRKRPAMYIGSTAAQGLHHLVYELVDNAIDEALAGYCDAVQVIIHLDGSVTVEDNGRG IPTDMHPTEGRSAAEVVLTVLHAGGKFDNTSYKVSGGLHGVGSSVVNALSTRLDLEIRRNGHVHTQTYRKGVPQAPLEIT GETKRRGTKITFFPDGEIFETTEFSFDVLSKRLRELAFLNAGVRIKIHDERTEKDHDFFYEGGIRSFVEYLNKNKNLVNP EPIYIRGEKSGVDIEIAMQYNDSYDEKVFSFANNINTHEGGTHLVGFKASLTRTMNTYATANNLLKNVKVAISGDDLREG LTAVISVKISQPQFEGQTKTKLGNSEVKGYVETLMNEKLATYLEENPAMARKILEKSIDAARAREAARKARELTRRKGAL EVGTLPGKLADCQEKDPALCELFLVEGDSAGGSAKQGRDRKYQAILPLKGKILNVEKARFDKMLASQEIRTLISALGTSI GKEDFDMAKLRYHRIIVMTDADVDGSHILTLLLTFFFRQMLELIERGYLYIAQPPLYKIKRGRKEQYLKNEAALQAYLLE EGTEEMTLKLGVGNDERVYRGKQIIPILTQLIDYNELFDKVVKKGINDELLRVFLKTGIKPGLEEMADLIALLPKMKEAF PEVTTEEFGDSIIFAFGNLRVKIDHQIFSVLESYEYGMLLENHKRMRSVMGAGTGVVLGAEDKLVLETENQEDILSFFME SAKKGLYIQRYKGLGEMNPEQLWETTMHQENRVLLQVKIEDAVAAEEIFTVLMGDQVEPRRDFIEQNALNVSNLDI
Specific function: DNA gyrase negatively supercoils closed circular double- stranded DNA in an ATP-dependent manner and also catalyzes the interconversion of other topological isomers of double-stranded DNA rings, including catenanes and knotted rings [H]
COG id: COG0187
COG function: function code L; Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 Toprim domain [H]
Homologues:
Organism=Homo sapiens, GI19913406, Length=575, Percent_Identity=26.2608695652174, Blast_Score=137, Evalue=6e-32, Organism=Homo sapiens, GI19913408, Length=585, Percent_Identity=25.1282051282051, Blast_Score=131, Evalue=2e-30, Organism=Escherichia coli, GI48994957, Length=815, Percent_Identity=52.6380368098159, Blast_Score=801, Evalue=0.0, Organism=Escherichia coli, GI1789408, Length=608, Percent_Identity=38.9802631578947, Blast_Score=405, Evalue=1e-114, Organism=Caenorhabditis elegans, GI212645845, Length=550, Percent_Identity=26.9090909090909, Blast_Score=147, Evalue=3e-35, Organism=Caenorhabditis elegans, GI17535065, Length=574, Percent_Identity=25.9581881533101, Blast_Score=141, Evalue=2e-33, Organism=Caenorhabditis elegans, GI212645657, Length=144, Percent_Identity=34.7222222222222, Blast_Score=69, Evalue=7e-12, Organism=Saccharomyces cerevisiae, GI6324241, Length=596, Percent_Identity=27.6845637583893, Blast_Score=144, Evalue=4e-35, Organism=Drosophila melanogaster, GI17136538, Length=570, Percent_Identity=26.6666666666667, Blast_Score=146, Evalue=4e-35,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR011557 - InterPro: IPR020568 - InterPro: IPR014721 - InterPro: IPR001241 - InterPro: IPR013759 - InterPro: IPR002288 - InterPro: IPR013506 - InterPro: IPR013760 - InterPro: IPR018522 - InterPro: IPR006171 [H]
Pfam domain/function: PF00204 DNA_gyraseB; PF00986 DNA_gyraseB_C; PF02518 HATPase_c; PF01751 Toprim [H]
EC number: =5.99.1.3 [H]
Molecular weight: Translated: 89272; Mature: 89272
Theoretical pI: Translated: 5.54; Mature: 5.54
Prosite motif: PS00177 TOPOISOMERASE_II
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNSEEQGDYGADKIQILEGLEAVRKRPAMYIGSTAAQGLHHLVYELVDNAIDEALAGYCD CCCCCCCCCCCHHHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHH AVQVIIHLDGSVTVEDNGRGIPTDMHPTEGRSAAEVVLTVLHAGGKFDNTSYKVSGGLHG HEEEEEEECCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEECCCCCH VGSSVVNALSTRLDLEIRRNGHVHTQTYRKGVPQAPLEITGETKRRGTKITFFPDGEIFE HHHHHHHHHHHHHEEEEECCCCEEHHHHHCCCCCCCCEECCCHHHCCCEEEECCCCCEEE TTEFSFDVLSKRLRELAFLNAGVRIKIHDERTEKDHDFFYEGGIRSFVEYLNKNKNLVNP CCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHCCCHHHHHHHHHCCCCCCCC EPIYIRGEKSGVDIEIAMQYNDSYDEKVFSFANNINTHEGGTHLVGFKASLTRTMNTYAT CCEEEECCCCCCEEEEEEEECCCHHHHHHHHHHCCCCCCCCCEEEEEHHHHHHHHHHHHH ANNLLKNVKVAISGDDLREGLTAVISVKISQPQFEGQTKTKLGNSEVKGYVETLMNEKLA HHHHHHHCEEEECCCHHHHCCEEEEEEEECCCCCCCCHHHCCCCHHHHHHHHHHHHHHHH TYLEENPAMARKILEKSIDAARAREAARKARELTRRKGALEVGTLPGKLADCQEKDPALC HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCEE ELFLVEGDSAGGSAKQGRDRKYQAILPLKGKILNVEKARFDKMLASQEIRTLISALGTSI EEEEEECCCCCCCCCCCCCCCEEEEECCCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHC GKEDFDMAKLRYHRIIVMTDADVDGSHILTLLLTFFFRQMLELIERGYLYIAQPPLYKIK CCCCHHHHHEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCHHHHH RGRKEQYLKNEAALQAYLLEEGTEEMTLKLGVGNDERVYRGKQIIPILTQLIDYNELFDK CCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHCCCHHHHHHHHHHCHHHHHHH VVKKGINDELLRVFLKTGIKPGLEEMADLIALLPKMKEAFPEVTTEEFGDSIIFAFGNLR HHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHCCEEEEEECCEE VKIDHQIFSVLESYEYGMLLENHKRMRSVMGAGTGVVLGAEDKLVLETENQEDILSFFME EEEHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCEEEECCCCCEEEECCCHHHHHHHHHH SAKKGLYIQRYKGLGEMNPEQLWETTMHQENRVLLQVKIEDAVAAEEIFTVLMGDQVEPR HHHCCCEEEECCCCCCCCHHHHHHHHHCCCCEEEEEEEEHHHHHHHHHHHHHHCCCCCHH RDFIEQNALNVSNLDI HHHHHHCCCCCCCCCC >Mature Secondary Structure MNSEEQGDYGADKIQILEGLEAVRKRPAMYIGSTAAQGLHHLVYELVDNAIDEALAGYCD CCCCCCCCCCCHHHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHH AVQVIIHLDGSVTVEDNGRGIPTDMHPTEGRSAAEVVLTVLHAGGKFDNTSYKVSGGLHG HEEEEEEECCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEECCCCCH VGSSVVNALSTRLDLEIRRNGHVHTQTYRKGVPQAPLEITGETKRRGTKITFFPDGEIFE HHHHHHHHHHHHHEEEEECCCCEEHHHHHCCCCCCCCEECCCHHHCCCEEEECCCCCEEE TTEFSFDVLSKRLRELAFLNAGVRIKIHDERTEKDHDFFYEGGIRSFVEYLNKNKNLVNP CCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHCCCHHHHHHHHHCCCCCCCC EPIYIRGEKSGVDIEIAMQYNDSYDEKVFSFANNINTHEGGTHLVGFKASLTRTMNTYAT CCEEEECCCCCCEEEEEEEECCCHHHHHHHHHHCCCCCCCCCEEEEEHHHHHHHHHHHHH ANNLLKNVKVAISGDDLREGLTAVISVKISQPQFEGQTKTKLGNSEVKGYVETLMNEKLA HHHHHHHCEEEECCCHHHHCCEEEEEEEECCCCCCCCHHHCCCCHHHHHHHHHHHHHHHH TYLEENPAMARKILEKSIDAARAREAARKARELTRRKGALEVGTLPGKLADCQEKDPALC HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCEE ELFLVEGDSAGGSAKQGRDRKYQAILPLKGKILNVEKARFDKMLASQEIRTLISALGTSI EEEEEECCCCCCCCCCCCCCCEEEEECCCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHC GKEDFDMAKLRYHRIIVMTDADVDGSHILTLLLTFFFRQMLELIERGYLYIAQPPLYKIK CCCCHHHHHEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCHHHHH RGRKEQYLKNEAALQAYLLEEGTEEMTLKLGVGNDERVYRGKQIIPILTQLIDYNELFDK CCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHCCCHHHHHHHHHHCHHHHHHH VVKKGINDELLRVFLKTGIKPGLEEMADLIALLPKMKEAFPEVTTEEFGDSIIFAFGNLR HHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHCCEEEEEECCEE VKIDHQIFSVLESYEYGMLLENHKRMRSVMGAGTGVVLGAEDKLVLETENQEDILSFFME EEEHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCEEEECCCCCEEEECCCHHHHHHHHHH SAKKGLYIQRYKGLGEMNPEQLWETTMHQENRVLLQVKIEDAVAAEEIFTVLMGDQVEPR HHHCCCEEEECCCCCCCCHHHHHHHHHCCCCEEEEEEEEHHHHHHHHHHHHHHCCCCCHH RDFIEQNALNVSNLDI HHHHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 10952301 [H]