| Definition | Phenylobacterium zucineum HLK1, complete genome. |
|---|---|
| Accession | NC_011144 |
| Length | 3,996,255 |
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The map label for this gene is 197106077
Identifier: 197106077
GI number: 197106077
Start: 3004992
End: 3006071
Strand: Reverse
Name: 197106077
Synonym: PHZ_c2616
Alternate gene names: NA
Gene position: 3006071-3004992 (Counterclockwise)
Preceding gene: 197106080
Following gene: 197106075
Centisome position: 75.22
GC content: 73.24
Gene sequence:
>1080_bases GTGGCGACAATTGTCGGGGGGCGTCCTGTCGCCCTCGCGGTCAGGGAACCGAGTATCTTGAAATTTGGAACGCAGGCACG CGCCGACTGGCGCATGCTGATGAGCGCCGCTTTGATTGGTTCAGGCGTTGGCCTGAGCCTGGGCGCTGCATACCTGGCGG GGGGCATGGCCCAGCACGCCGCCGACCACAGCCGCGTGGAGCGCATCGCCCAGGCGACGGCCGGCGGCTATTCGAACGCC CTTCTGCAGGACGAAGGCGTGCTGCGCCTGACGCAGGCCGACGCCGCCGCGGCGCAGGCCCGCCAACTCGCCGCGCTCAC CGAGCGGCTGGAGCGCAGCACCGCCCGCGAGGAGTCCAACGCACAACGCGAGCTCGAGTGCCTCACCCAGGCGGTCTATT ACGAGGCCCGCGGCGAAAGCCCGCGCGGACAGCTCGCGGTCGCCCAGGTGGTGATGAACCGTGTGAAGCACCCGGCCTTC CCGAAGACCGTGTGCGGGGTGGTGTTCCAGGGCTCGGCCCGCCGGACCGGCTGCCAGTTCAGCTTCACCTGCGACGGCTC CATGCGCCGCGGCCAGGAGACCAGCGCCTGGAAGCGCGCCCGCAAGGTCGCGGCCCGCGTCCTGGCCGGCGCCGCCGTCG CCGAGGTCGGCTCGGCCACGCACTTCCACACGACCGCGGTCTCGCCGGCCTGGGGCCCGCAGATGCGGCGCGTGGCCCAG GTGGGCATGCACGTCTTCTACAAGTTCAACCCGCGCGGGATGATGCAGGCGGCCGCGCCGGCGGCGGTGCAGCCTGCGGT GCTGACCTCGGCCGTCGCCGAGCCGATGGAGCTGCGGCTGACCAACGCCGTCATGGAGGCCCCTGCGGAGGCTGCGGCCG GCGAGGCCAAGGACGCCGTGGCGGCCAATCCGGCCGCGGCTGCGGACAAGCCGGTCCAAGGCGCCAAGTCCGCCGCGGCC CAGGGTCAGGCTTCGGCCCAGCCCAAGCCGGCCGCGACCAAGCCGGCGCCCGCCGCGCTCAAGCCGGCCGAAGCGGCGGC GCTGAAGGCCCCGCAGGCCTCGGACGCCGCGATCTCCTGA
Upstream 100 bases:
>100_bases GTTCATTCATATCTCCTTCACCATTTGCCGTCGCCTGCCCCATTAACGGATCCGGGGCCAGGCCTGCCGGCGGGCGCTTC CAGCACGAGCAGGGGCGACC
Downstream 100 bases:
>100_bases CGCGATCCCTGCTCCGCAGCCGGGTCTGTGGAGGCGGGCTCAAGCCCGCGCCGCCCGCCGCAGCGCCTGCGGCGGCTGGC CGAAGGCGCGCAGGAAGGCG
Product: hypothetical protein
Products: NA
Alternate protein names: Cell Wall Hydrolase Family; SleB-Like Protein; Hydrolase; Cell Wall Hydrolase; Spore Cortex-Lytic; Cell Wall Hydrolase Domain Protein; Spore-Cortex-Lytic Prepeptide; Cell Wall Hydrolase Sleb; N-Acetylmuramoyl-L-Alanine Amidase; Cell Wall Hydrolase Domain-Containing Protein; Cell Wall Hydrolase Family Protein
Number of amino acids: Translated: 359; Mature: 358
Protein sequence:
>359_residues MATIVGGRPVALAVREPSILKFGTQARADWRMLMSAALIGSGVGLSLGAAYLAGGMAQHAADHSRVERIAQATAGGYSNA LLQDEGVLRLTQADAAAAQARQLAALTERLERSTAREESNAQRELECLTQAVYYEARGESPRGQLAVAQVVMNRVKHPAF PKTVCGVVFQGSARRTGCQFSFTCDGSMRRGQETSAWKRARKVAARVLAGAAVAEVGSATHFHTTAVSPAWGPQMRRVAQ VGMHVFYKFNPRGMMQAAAPAAVQPAVLTSAVAEPMELRLTNAVMEAPAEAAAGEAKDAVAANPAAAADKPVQGAKSAAA QGQASAQPKPAATKPAPAALKPAEAAALKAPQASDAAIS
Sequences:
>Translated_359_residues MATIVGGRPVALAVREPSILKFGTQARADWRMLMSAALIGSGVGLSLGAAYLAGGMAQHAADHSRVERIAQATAGGYSNA LLQDEGVLRLTQADAAAAQARQLAALTERLERSTAREESNAQRELECLTQAVYYEARGESPRGQLAVAQVVMNRVKHPAF PKTVCGVVFQGSARRTGCQFSFTCDGSMRRGQETSAWKRARKVAARVLAGAAVAEVGSATHFHTTAVSPAWGPQMRRVAQ VGMHVFYKFNPRGMMQAAAPAAVQPAVLTSAVAEPMELRLTNAVMEAPAEAAAGEAKDAVAANPAAAADKPVQGAKSAAA QGQASAQPKPAATKPAPAALKPAEAAALKAPQASDAAIS >Mature_358_residues ATIVGGRPVALAVREPSILKFGTQARADWRMLMSAALIGSGVGLSLGAAYLAGGMAQHAADHSRVERIAQATAGGYSNAL LQDEGVLRLTQADAAAAQARQLAALTERLERSTAREESNAQRELECLTQAVYYEARGESPRGQLAVAQVVMNRVKHPAFP KTVCGVVFQGSARRTGCQFSFTCDGSMRRGQETSAWKRARKVAARVLAGAAVAEVGSATHFHTTAVSPAWGPQMRRVAQV GMHVFYKFNPRGMMQAAAPAAVQPAVLTSAVAEPMELRLTNAVMEAPAEAAAGEAKDAVAANPAAAADKPVQGAKSAAAQ GQASAQPKPAATKPAPAALKPAEAAALKAPQASDAAIS
Specific function: Unknown
COG id: COG3773
COG function: function code M; Cell wall hydrolyses involved in spore germination
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 37113; Mature: 36981
Theoretical pI: Translated: 10.38; Mature: 10.38
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MATIVGGRPVALAVREPSILKFGTQARADWRMLMSAALIGSGVGLSLGAAYLAGGMAQHA CCEEECCCCEEEEECCCCHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH ADHSRVERIAQATAGGYSNALLQDEGVLRLTQADAAAAQARQLAALTERLERSTAREESN HHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AQRELECLTQAVYYEARGESPRGQLAVAQVVMNRVKHPAFPKTVCGVVFQGSARRTGCQF HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCEE SFTCDGSMRRGQETSAWKRARKVAARVLAGAAVAEVGSATHFHTTAVSPAWGPQMRRVAQ EEEECCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHH VGMHVFYKFNPRGMMQAAAPAAVQPAVLTSAVAEPMELRLTNAVMEAPAEAAAGEAKDAV HHHHEEEEECCCCHHHHCCCCCCCHHHHHHHHHCHHHHHHHHHHHHCCHHHHCCCCHHHH AANPAAAADKPVQGAKSAAAQGQASAQPKPAATKPAPAALKPAEAAALKAPQASDAAIS CCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCC >Mature Secondary Structure ATIVGGRPVALAVREPSILKFGTQARADWRMLMSAALIGSGVGLSLGAAYLAGGMAQHA CEEECCCCEEEEECCCCHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH ADHSRVERIAQATAGGYSNALLQDEGVLRLTQADAAAAQARQLAALTERLERSTAREESN HHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AQRELECLTQAVYYEARGESPRGQLAVAQVVMNRVKHPAFPKTVCGVVFQGSARRTGCQF HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCEE SFTCDGSMRRGQETSAWKRARKVAARVLAGAAVAEVGSATHFHTTAVSPAWGPQMRRVAQ EEEECCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHH VGMHVFYKFNPRGMMQAAAPAAVQPAVLTSAVAEPMELRLTNAVMEAPAEAAAGEAKDAV HHHHEEEEECCCCHHHHCCCCCCCHHHHHHHHHCHHHHHHHHHHHHCCHHHHCCCCHHHH AANPAAAADKPVQGAKSAAAQGQASAQPKPAATKPAPAALKPAEAAALKAPQASDAAIS CCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA