| Definition | Phenylobacterium zucineum HLK1, complete genome. |
|---|---|
| Accession | NC_011144 |
| Length | 3,996,255 |
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The map label for this gene is 197106075
Identifier: 197106075
GI number: 197106075
Start: 3003244
End: 3003930
Strand: Reverse
Name: 197106075
Synonym: PHZ_c2614
Alternate gene names: NA
Gene position: 3003930-3003244 (Counterclockwise)
Preceding gene: 197106077
Following gene: 197106066
Centisome position: 75.17
GC content: 74.24
Gene sequence:
>687_bases ATGTCCAAGCTCAGCATCGTCATCGCCCTCTATCCCGGCGTCACCCACCTCGACTTCACCGGGCCGCACCAGTTTCTCGT CCGCACGCCGGACGCGGAGGTGACGGTCGCTTCGCTGGGCGGTCGTGACATCGAGGCCGAGGGGCTCACCTTTTCGGGCC TGGCCGACCTGGCGGCTGTGGAGCGCTGCGACGTGCTGCTGGTCCCCGGCGGCTTCGGCGCCACCGACGCCATCCTGGAC GAGGCGTTCATGGCGCAGATCCGGCGGCTGGGCGGGACCGCCCGCTATCTCACCAGCGTCTGCACCGGCTCGCTGATCCT GGGCGCGGCCGGCTTCCTGACGGGCCGGCGCGCGGCCTGCCACTGGGCCTGGCGCGACCTGCTGACGCCGTTCGGGGCGC TCGTCTCGGAGGCGCGGGTCGAGCGGGACGGGAACATCATCACCGGCGGGGGCGTGACCGCGGGGATCGACTTCGCCCTG GTGCTGCTGGCCGAACTGGCCGGCGAGGCCTACGCCGAGAGCGTCCAACTCGGGCTGGAGTATGCGCCGGCGCCGCCGTT CCAGTCCGGCCGGCCGGAACAGGCCCGGCCCGAGGTGCTGGCGCAGGTGAAGGCGGTGATGGCCCAGGCCCGGGCCGGCC GCGAGTCGGCCGCCCGCGCGGCCGCCGCGCGGCTGCAGCCGGCCTGA
Upstream 100 bases:
>100_bases ACGGCGATTCGGCGGCTCATGGCAGGAAGCGTGGGATCGATGGCGTTTCTGCCAGACCGTGCGCCGGCTACGGTGCCGCC GTCAACTCAGGAGGCGGCCC
Downstream 100 bases:
>100_bases CGTCCTTCAGGCGCCCGTCAGCGCTTCGGAACGTGGGCGATCATCTGGATCTCGACCACGCCATCGCCCGCCAGCAGCCC GGTCGCGCCCACCGCCGTCC
Product: transcriptional regulator,ThiJ/PfpI family protein
Products: NA
Alternate protein names: ThiJ/PfpI Domain Protein; AraC Family Transcriptional Regulator; Transcriptional Regulator; ThiJ/PfpI Family Protein; ThiJ/PfpI; DJ-1/PfpI Family Protein; Transcriptional Regulator AraC Family; Isonitrile Hydratase; Transcriptional Regulator AraC Family Protein; ThiJ Family Protein; DJ-1/PfpI Family; AraC Family Transcription Regulator; Intracellular Protease/Amidase; AraC-Family Transcriptional Regulator; DJ-1/PfpI Superfamily Protein; AraC Family Transcription Regulator Protein; Twin-Arginine Translocation Pathway Signal; PfpI Family Protein; Hydratase; Cyclohexyl-Isocyanide Hydratase; ThiH/PfpI Family Amidotransferase; ADPA-Family Transcriptional Regulator; Intracellular Protease/Amidase Protein; Transcriptional Regulatory Protein; Thij/Pfpi Family Protein; Transcription Regulator Protein; Transcriptional Regulator Protein; ThiJ/PfpI Family Transcriptional Regulator Protein; DsbA Family ThiolDisulfide Interchange Protein; Transcription Regulator Protein Thij/Pfpi; Transcriptional Regulator ThiJ/PfpI Family Protein; Fis Family Transcriptional Regulator; ThiJ/PfpI Family Transcriptional Regulator
Number of amino acids: Translated: 228; Mature: 227
Protein sequence:
>228_residues MSKLSIVIALYPGVTHLDFTGPHQFLVRTPDAEVTVASLGGRDIEAEGLTFSGLADLAAVERCDVLLVPGGFGATDAILD EAFMAQIRRLGGTARYLTSVCTGSLILGAAGFLTGRRAACHWAWRDLLTPFGALVSEARVERDGNIITGGGVTAGIDFAL VLLAELAGEAYAESVQLGLEYAPAPPFQSGRPEQARPEVLAQVKAVMAQARAGRESAARAAAARLQPA
Sequences:
>Translated_228_residues MSKLSIVIALYPGVTHLDFTGPHQFLVRTPDAEVTVASLGGRDIEAEGLTFSGLADLAAVERCDVLLVPGGFGATDAILD EAFMAQIRRLGGTARYLTSVCTGSLILGAAGFLTGRRAACHWAWRDLLTPFGALVSEARVERDGNIITGGGVTAGIDFAL VLLAELAGEAYAESVQLGLEYAPAPPFQSGRPEQARPEVLAQVKAVMAQARAGRESAARAAAARLQPA >Mature_227_residues SKLSIVIALYPGVTHLDFTGPHQFLVRTPDAEVTVASLGGRDIEAEGLTFSGLADLAAVERCDVLLVPGGFGATDAILDE AFMAQIRRLGGTARYLTSVCTGSLILGAAGFLTGRRAACHWAWRDLLTPFGALVSEARVERDGNIITGGGVTAGIDFALV LLAELAGEAYAESVQLGLEYAPAPPFQSGRPEQARPEVLAQVKAVMAQARAGRESAARAAAARLQPA
Specific function: Unknown
COG id: COG0693
COG function: function code R; Putative intracellular protease/amidase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Drosophila melanogaster, GI28571932, Length=190, Percent_Identity=29.4736842105263, Blast_Score=65, Evalue=4e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 23773; Mature: 23642
Theoretical pI: Translated: 5.05; Mature: 5.05
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKLSIVIALYPGVTHLDFTGPHQFLVRTPDAEVTVASLGGRDIEAEGLTFSGLADLAAV CCCEEEEEEECCCCEEEECCCCCEEEEECCCCCEEEEECCCCEECCCCCCHHHHHHHHHH ERCDVLLVPGGFGATDAILDEAFMAQIRRLGGTARYLTSVCTGSLILGAAGFLTGRRAAC HHCCEEEECCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCHHHH HWAWRDLLTPFGALVSEARVERDGNIITGGGVTAGIDFALVLLAELAGEAYAESVQLGLE HHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCE YAPAPPFQSGRPEQARPEVLAQVKAVMAQARAGRESAARAAAARLQPA ECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCC >Mature Secondary Structure SKLSIVIALYPGVTHLDFTGPHQFLVRTPDAEVTVASLGGRDIEAEGLTFSGLADLAAV CCEEEEEEECCCCEEEECCCCCEEEEECCCCCEEEEECCCCEECCCCCCHHHHHHHHHH ERCDVLLVPGGFGATDAILDEAFMAQIRRLGGTARYLTSVCTGSLILGAAGFLTGRRAAC HHCCEEEECCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCHHHH HWAWRDLLTPFGALVSEARVERDGNIITGGGVTAGIDFALVLLAELAGEAYAESVQLGLE HHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCE YAPAPPFQSGRPEQARPEVLAQVKAVMAQARAGRESAARAAAARLQPA ECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA