Click here to switch to the map view.

The map label for this gene is secD [H]

Identifier: 197105417

GI number: 197105417

Start: 2188035

End: 2189639

Strand: Reverse

Name: secD [H]

Synonym: PHZ_c1954

Alternate gene names: 197105417

Gene position: 2189639-2188035 (Counterclockwise)

Preceding gene: 197105418

Following gene: 197105416

Centisome position: 54.79

GC content: 70.28

Gene sequence:

>1605_bases
ATGCTGACCCTCTCGCGCTGGAAGGTTCTCCTCGTCGTCCTGTCGGTCGTGCTGGGGGCGCTGCTCGCGTTTCCCAACGT
CGTGCCGCCCGAGACGCGGGCGAGCCTGCCGGGCTTCGTTCCGAAGCAGACCCTGAACCTCGGCCTCGACCTCCAGGGGG
GCTCGTACCTCCTGCTCGAGGTCGACACCGAGGCGCTCCGCGCCGAGCGCCTGACCAACACGGTCGAGGACGTCCGAACC
CAGCTGCGAGAGGCGCAGATTCCCTTCACCGGCCTTGGGGTGGTCAACGGCGCGGTGGCGGTGCGCATCACCGACCCGGC
CCAGGTGCGCGAGGCCCAGACGCTCCTGCGCAACACGCTCGGCGCGCCGCTCGCCGGGACTGTCGGCGGCCGGGACCTGA
CCGTCTCGACCGAGGCCGACCAGCGCATCCGCGTGACCTTCGTGCCCGAGGCGATGCAGGCCGAATCCGCGCGCGCCGTC
GAGCAGTCGATCGAGATCATCCGCCGCCGGGTGGACGAGCTCGGCACGCGCGAGCCGACCATCGTCCGCCAGGGGACCAA
CCGGATCGTCGTGCAGGCGCCCGGCGAGAGCGATCCCGAGCGGCTGAAGAACGTCATCGGCCAGACCGCCAAGCTGACCT
TCCAGATGGTCGACGAGGCCGCCGACCTGAACGAGGCCGCGGCCGGCCGCGTGCCGCCCGGCTCCGAGGTCCTGCCCAGC
GACGACGGCGCCGTGCCGTTCTATGTCGTCAAGCGCCGCGCGGTGGTGACGGGCGAGATGCTGACCTCGGCCAGCGCCGC
TTTCCACCCCCAGACCGGACAGCCGATCGTCGAGTTCCGCTTCGACGGGCAGGGCGCGCGCCGCTTCGGCGACGCCACCA
CCCAGAACATCGGCAAGCGCTTCGCGATCGTCCTCGACAAGAAGGTGATCTCGGCGCCGCGGATCAACTCGGCCATCACC
GGCGGCTCGGGCTACATCGAGGGCAACTTCACGACCGAATCGGCCAACGACCTGGCCGTCCTGCTGCGCGCCGGCGCCCT
GCCGGCGCCGCTGAACGTCGAGGAGCAGCGCACGGTCAGCGCCGAACTCGGCGCCGACGCCATCAAGGCGGGCCAGATCT
CCACCGTCGTCGCGTTCGTCTCGGTCGTCGGCTTCATGCTGCTGGCCTACGGCTTCCTGTTCGGCGGCATCTCGATCATC
GCCCTGCTGGTCAACGGCCTGCTGATCATCGCCGCCATGAGCCTGACCCAGGCGACGCTGACCCTGCCGGGCATCGCCGG
CCTGATCCTGACGCTCGCCATGGCCGTGGACGCCAACGTGCTGATCTACGAGCGCATGCGCGACGAGGTCCGCGCCGGGC
GCACCGCCATCGCGGCCATGGACGCCGGCTTCTCCCGGGCCATGACCACCATCGTCGACGCCAACCTGACGACGCTGCTG
GCGGCGCTGCTGATGTTCCAGTTCGGCGCCGGCCCGGTGAAGGGCTTCGCCTGGACGCTGTCCATCGGCGTGGTCACCTC
GGTGTTCACCGCCGTCCTCATCACCCAGGTTCTGCTGGCCTTGTGGTATCGCACCACGCGGCCCAAGACCCTGCCGATCG
CGTAA

Upstream 100 bases:

>100_bases
CACCGTGAAGGTGGTCAAGTCCATGGTCGCCGACGTCCGCGCCAAGGGCGAACCGGCCGCCGCCAACGACGCCAAGGCCT
AAGCGAAAAGCCCCCTTCCG

Downstream 100 bases:

>100_bases
GGAGGGCCTGACCCATGTGGCCCCTGATCAAGATCATCCCGATCAAGACGAACTTCCGGTTCGTCCGGTTCGCCAAGATC
GCCGGGATTCTCTCGGCCCT

Product: preprotein translocase subunit SecD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 534; Mature: 534

Protein sequence:

>534_residues
MLTLSRWKVLLVVLSVVLGALLAFPNVVPPETRASLPGFVPKQTLNLGLDLQGGSYLLLEVDTEALRAERLTNTVEDVRT
QLREAQIPFTGLGVVNGAVAVRITDPAQVREAQTLLRNTLGAPLAGTVGGRDLTVSTEADQRIRVTFVPEAMQAESARAV
EQSIEIIRRRVDELGTREPTIVRQGTNRIVVQAPGESDPERLKNVIGQTAKLTFQMVDEAADLNEAAAGRVPPGSEVLPS
DDGAVPFYVVKRRAVVTGEMLTSASAAFHPQTGQPIVEFRFDGQGARRFGDATTQNIGKRFAIVLDKKVISAPRINSAIT
GGSGYIEGNFTTESANDLAVLLRAGALPAPLNVEEQRTVSAELGADAIKAGQISTVVAFVSVVGFMLLAYGFLFGGISII
ALLVNGLLIIAAMSLTQATLTLPGIAGLILTLAMAVDANVLIYERMRDEVRAGRTAIAAMDAGFSRAMTTIVDANLTTLL
AALLMFQFGAGPVKGFAWTLSIGVVTSVFTAVLITQVLLALWYRTTRPKTLPIA

Sequences:

>Translated_534_residues
MLTLSRWKVLLVVLSVVLGALLAFPNVVPPETRASLPGFVPKQTLNLGLDLQGGSYLLLEVDTEALRAERLTNTVEDVRT
QLREAQIPFTGLGVVNGAVAVRITDPAQVREAQTLLRNTLGAPLAGTVGGRDLTVSTEADQRIRVTFVPEAMQAESARAV
EQSIEIIRRRVDELGTREPTIVRQGTNRIVVQAPGESDPERLKNVIGQTAKLTFQMVDEAADLNEAAAGRVPPGSEVLPS
DDGAVPFYVVKRRAVVTGEMLTSASAAFHPQTGQPIVEFRFDGQGARRFGDATTQNIGKRFAIVLDKKVISAPRINSAIT
GGSGYIEGNFTTESANDLAVLLRAGALPAPLNVEEQRTVSAELGADAIKAGQISTVVAFVSVVGFMLLAYGFLFGGISII
ALLVNGLLIIAAMSLTQATLTLPGIAGLILTLAMAVDANVLIYERMRDEVRAGRTAIAAMDAGFSRAMTTIVDANLTTLL
AALLMFQFGAGPVKGFAWTLSIGVVTSVFTAVLITQVLLALWYRTTRPKTLPIA
>Mature_534_residues
MLTLSRWKVLLVVLSVVLGALLAFPNVVPPETRASLPGFVPKQTLNLGLDLQGGSYLLLEVDTEALRAERLTNTVEDVRT
QLREAQIPFTGLGVVNGAVAVRITDPAQVREAQTLLRNTLGAPLAGTVGGRDLTVSTEADQRIRVTFVPEAMQAESARAV
EQSIEIIRRRVDELGTREPTIVRQGTNRIVVQAPGESDPERLKNVIGQTAKLTFQMVDEAADLNEAAAGRVPPGSEVLPS
DDGAVPFYVVKRRAVVTGEMLTSASAAFHPQTGQPIVEFRFDGQGARRFGDATTQNIGKRFAIVLDKKVISAPRINSAIT
GGSGYIEGNFTTESANDLAVLLRAGALPAPLNVEEQRTVSAELGADAIKAGQISTVVAFVSVVGFMLLAYGFLFGGISII
ALLVNGLLIIAAMSLTQATLTLPGIAGLILTLAMAVDANVLIYERMRDEVRAGRTAIAAMDAGFSRAMTTIVDANLTTLL
AALLMFQFGAGPVKGFAWTLSIGVVTSVFTAVLITQVLLALWYRTTRPKTLPIA

Specific function: Involved in protein export [H]

COG id: COG0342

COG function: function code U; Preprotein translocase subunit SecD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786609, Length=515, Percent_Identity=36.1165048543689, Blast_Score=286, Evalue=2e-78,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001036
- InterPro:   IPR005791
- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 56780; Mature: 56780

Theoretical pI: Translated: 6.19; Mature: 6.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLTLSRWKVLLVVLSVVLGALLAFPNVVPPETRASLPGFVPKQTLNLGLDLQGGSYLLLE
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHCCCCCCCCCHHHCCCEEECCCCEEEEE
VDTEALRAERLTNTVEDVRTQLREAQIPFTGLGVVNGAVAVRITDPAQVREAQTLLRNTL
ECHHHHHHHHHHHHHHHHHHHHHHHCCCEEECEEECCEEEEEECCHHHHHHHHHHHHHHC
GAPLAGTVGGRDLTVSTEADQRIRVTFVPEAMQAESARAVEQSIEIIRRRVDELGTREPT
CCCCCCCCCCCEEEEECCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCE
IVRQGTNRIVVQAPGESDPERLKNVIGQTAKLTFQMVDEAADLNEAAAGRVPPGSEVLPS
EEECCCCEEEEECCCCCCHHHHHHHHCHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCCC
DDGAVPFYVVKRRAVVTGEMLTSASAAFHPQTGQPIVEFRFDGQGARRFGDATTQNIGKR
CCCCCCHHEEHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCHHHCCCHHHHHHCCC
FAIVLDKKVISAPRINSAITGGSGYIEGNFTTESANDLAVLLRAGALPAPLNVEEQRTVS
EEEEEEHHHHCCCCCCCEEECCCCEEECCEECCCCCHHHHHHHCCCCCCCCCCCHHHHHH
AELGADAIKAGQISTVVAFVSVVGFMLLAYGFLFGGISIIALLVNGLLIIAAMSLTQATL
HHHCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TLPGIAGLILTLAMAVDANVLIYERMRDEVRAGRTAIAAMDAGFSRAMTTIVDANLTTLL
HCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCHHHHHHHHCCHHHHHHHHHHCCHHHHH
AALLMFQFGAGPVKGFAWTLSIGVVTSVFTAVLITQVLLALWYRTTRPKTLPIA
HHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MLTLSRWKVLLVVLSVVLGALLAFPNVVPPETRASLPGFVPKQTLNLGLDLQGGSYLLLE
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHCCCCCCCCCHHHCCCEEECCCCEEEEE
VDTEALRAERLTNTVEDVRTQLREAQIPFTGLGVVNGAVAVRITDPAQVREAQTLLRNTL
ECHHHHHHHHHHHHHHHHHHHHHHHCCCEEECEEECCEEEEEECCHHHHHHHHHHHHHHC
GAPLAGTVGGRDLTVSTEADQRIRVTFVPEAMQAESARAVEQSIEIIRRRVDELGTREPT
CCCCCCCCCCCEEEEECCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCE
IVRQGTNRIVVQAPGESDPERLKNVIGQTAKLTFQMVDEAADLNEAAAGRVPPGSEVLPS
EEECCCCEEEEECCCCCCHHHHHHHHCHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCCC
DDGAVPFYVVKRRAVVTGEMLTSASAAFHPQTGQPIVEFRFDGQGARRFGDATTQNIGKR
CCCCCCHHEEHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCHHHCCCHHHHHHCCC
FAIVLDKKVISAPRINSAITGGSGYIEGNFTTESANDLAVLLRAGALPAPLNVEEQRTVS
EEEEEEHHHHCCCCCCCEEECCCCEEECCEECCCCCHHHHHHHCCCCCCCCCCCHHHHHH
AELGADAIKAGQISTVVAFVSVVGFMLLAYGFLFGGISIIALLVNGLLIIAAMSLTQATL
HHHCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TLPGIAGLILTLAMAVDANVLIYERMRDEVRAGRTAIAAMDAGFSRAMTTIVDANLTTLL
HCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCHHHHHHHHCCHHHHHHHHHHCCHHHHH
AALLMFQFGAGPVKGFAWTLSIGVVTSVFTAVLITQVLLALWYRTTRPKTLPIA
HHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA