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The map label for this gene is secF [H]

Identifier: 197105416

GI number: 197105416

Start: 2187058

End: 2188020

Strand: Reverse

Name: secF [H]

Synonym: PHZ_c1953

Alternate gene names: 197105416

Gene position: 2188020-2187058 (Counterclockwise)

Preceding gene: 197105417

Following gene: 197105415

Centisome position: 54.75

GC content: 67.6

Gene sequence:

>963_bases
ATGTGGCCCCTGATCAAGATCATCCCGATCAAGACGAACTTCCGGTTCGTCCGGTTCGCCAAGATCGCCGGGATTCTCTC
GGCCCTCGCGGTGATCGCCTCGCTGGCGCGCGCCCTGATGCCGTTCGAGCCGCCCTGCGGCGGCCTGAACTGCGGCATCG
ACTTCACCGGCGGCACGGTCATCGAGCTGTCGACCGCGCCCCAGCAGGTCGACCTCGCTGCGGCCCGCGCGGCGATCAAC
CGCCTCGAACTGGGCGACCCCCAGGTGCAGGGCTTCGGCGACGGCACCGCCGCCATGGTCCGCTACCAGCCCCCGGCCGG
CGCGAGCGCCGACCAGGTGGCCGAGCAGGTCCGCGGCGCCCTGACCCAGGCGCTGGGCCAGGTGACCTTCGACGCGCCGG
ACGTGGTGGGCGCCAAGGTCTCGGGCGAGCTCTTCCAGAGCGGCCTGACCGCGCTCGGCCTCGCGATCCTGCTGATGCTG
ATCTACATCTGGTTCAGGTTCGAGCTGCAGTTCGGCATCGGCGCCGTCGTGGGCCTGTTCCACGACGTCATCCTGACGTT
CGGCCTGATCGCCTTCTTCCAGCTCGAGTTCAGCCTGAACACGGTGGCGGCGATCCTGACGGTCATCGGCTACTCGATGA
ACGACACCGTGGTGGTGTTCGACCGCCTCCGGGAGAACCTGCGCAAGTACAAGCGCATGCCTCTGCGCGAGGTCATCGAC
CTGTCGATCAACGAGACCCTGTCGCGGACCATCATCACCGGCGTGACCGCGATCATGGCGCTGACGGGTCTGGCGCTCTT
CGGCGGACCGACCCTGTTCGACATGTCGATCGTGCTGATCTTCGGCATCATCATCGGCACCTACTCGTCGGTCTATGTCG
CCGCCCCGGTGATCCTGCTGTGGGGCGTCAAGCGCGGCGAGGAAGAGGCCGAGCCGCTGAAGCCTGCCGGCGTGCGTCCC
TAG

Upstream 100 bases:

>100_bases
CGGTGTTCACCGCCGTCCTCATCACCCAGGTTCTGCTGGCCTTGTGGTATCGCACCACGCGGCCCAAGACCCTGCCGATC
GCGTAAGGAGGGCCTGACCC

Downstream 100 bases:

>100_bases
GGGCCGGCCGGTGGCCCGCAACGCCCCCACGCTGGACGCCTACGGCGACGGCGGCTTCCGCGTCGGCGGCGAGCGGCGGG
ACGGCTCGCTGCTGATCGTG

Product: protein-export membrane protein SecF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 320; Mature: 320

Protein sequence:

>320_residues
MWPLIKIIPIKTNFRFVRFAKIAGILSALAVIASLARALMPFEPPCGGLNCGIDFTGGTVIELSTAPQQVDLAAARAAIN
RLELGDPQVQGFGDGTAAMVRYQPPAGASADQVAEQVRGALTQALGQVTFDAPDVVGAKVSGELFQSGLTALGLAILLML
IYIWFRFELQFGIGAVVGLFHDVILTFGLIAFFQLEFSLNTVAAILTVIGYSMNDTVVVFDRLRENLRKYKRMPLREVID
LSINETLSRTIITGVTAIMALTGLALFGGPTLFDMSIVLIFGIIIGTYSSVYVAAPVILLWGVKRGEEEAEPLKPAGVRP

Sequences:

>Translated_320_residues
MWPLIKIIPIKTNFRFVRFAKIAGILSALAVIASLARALMPFEPPCGGLNCGIDFTGGTVIELSTAPQQVDLAAARAAIN
RLELGDPQVQGFGDGTAAMVRYQPPAGASADQVAEQVRGALTQALGQVTFDAPDVVGAKVSGELFQSGLTALGLAILLML
IYIWFRFELQFGIGAVVGLFHDVILTFGLIAFFQLEFSLNTVAAILTVIGYSMNDTVVVFDRLRENLRKYKRMPLREVID
LSINETLSRTIITGVTAIMALTGLALFGGPTLFDMSIVLIFGIIIGTYSSVYVAAPVILLWGVKRGEEEAEPLKPAGVRP
>Mature_320_residues
MWPLIKIIPIKTNFRFVRFAKIAGILSALAVIASLARALMPFEPPCGGLNCGIDFTGGTVIELSTAPQQVDLAAARAAIN
RLELGDPQVQGFGDGTAAMVRYQPPAGASADQVAEQVRGALTQALGQVTFDAPDVVGAKVSGELFQSGLTALGLAILLML
IYIWFRFELQFGIGAVVGLFHDVILTFGLIAFFQLEFSLNTVAAILTVIGYSMNDTVVVFDRLRENLRKYKRMPLREVID
LSINETLSRTIITGVTAIMALTGLALFGGPTLFDMSIVLIFGIIIGTYSSVYVAAPVILLWGVKRGEEEAEPLKPAGVRP

Specific function: Involved in protein export [H]

COG id: COG0341

COG function: function code U; Preprotein translocase subunit SecF

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786610, Length=273, Percent_Identity=39.9267399267399, Blast_Score=198, Evalue=5e-52,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645
- InterPro:   IPR005665 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 34347; Mature: 34347

Theoretical pI: Translated: 5.39; Mature: 5.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWPLIKIIPIKTNFRFVRFAKIAGILSALAVIASLARALMPFEPPCGGLNCGIDFTGGTV
CCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCEE
IELSTAPQQVDLAAARAAINRLELGDPQVQGFGDGTAAMVRYQPPAGASADQVAEQVRGA
EEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHH
LTQALGQVTFDAPDVVGAKVSGELFQSGLTALGLAILLMLIYIWFRFELQFGIGAVVGLF
HHHHHHCCCCCCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HDVILTFGLIAFFQLEFSLNTVAAILTVIGYSMNDTVVVFDRLRENLRKYKRMPLREVID
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHCCCHHHHHH
LSINETLSRTIITGVTAIMALTGLALFGGPTLFDMSIVLIFGIIIGTYSSVYVAAPVILL
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WGVKRGEEEAEPLKPAGVRP
HCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MWPLIKIIPIKTNFRFVRFAKIAGILSALAVIASLARALMPFEPPCGGLNCGIDFTGGTV
CCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCEE
IELSTAPQQVDLAAARAAINRLELGDPQVQGFGDGTAAMVRYQPPAGASADQVAEQVRGA
EEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHH
LTQALGQVTFDAPDVVGAKVSGELFQSGLTALGLAILLMLIYIWFRFELQFGIGAVVGLF
HHHHHHCCCCCCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HDVILTFGLIAFFQLEFSLNTVAAILTVIGYSMNDTVVVFDRLRENLRKYKRMPLREVID
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHCCCHHHHHH
LSINETLSRTIITGVTAIMALTGLALFGGPTLFDMSIVLIFGIIIGTYSSVYVAAPVILL
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WGVKRGEEEAEPLKPAGVRP
HCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9175857 [H]