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The map label for this gene is yvrB [H]

Identifier: 197105357

GI number: 197105357

Start: 2120204

End: 2121190

Strand: Reverse

Name: yvrB [H]

Synonym: PHZ_c1894

Alternate gene names: 197105357

Gene position: 2121190-2120204 (Counterclockwise)

Preceding gene: 197105358

Following gene: 197105356

Centisome position: 53.08

GC content: 76.7

Gene sequence:

>987_bases
GTGAGGCCGCTCGTCCTCAACCTCGCGCTGGCGGCCGGCGTCCTTGCCTTCGCCGCCGCCGGCCTGCTGCTGGGCGAGAC
GGCGCTCAGCGGCGCCCAGTACGCCCAGGCGTTCCGCGACCCGGCCTCGGGCCCCCACGTGGTGCTGTTCGAGATCCGCC
TGCCGCGGACCGTCGCGGCCCTGGTGGTTGGGGCGGCCCTGGGGCTGGCGGGCGCGGTGATGCAGGGCCTCCTGCGCAAT
CCCCTGGCCGATCCCGGCGTGCTCGGGGTCTCGGGCGGGGCGGGGCTCGGGGCGGCGCTCGCCATCTCGCTGGGCCTGTC
GGCGATCCCGGGCGCCATCGAAGCCGCCGCGCTGGCCGCGGCCCTCGCGACCGGCCTCCTGCTGACGGGCCTGGCCGCCC
GCTTCCGCGAACCCGAGACCCTGATCCTGTTCGGCGTCGCGCTCTCGGCCTTCCTCGGCGCGCTGACCTCGCTGGTGTTC
AACTTCTCGCCCTCGCCGGTGACCCTCGCCGAGGTGTTCGGCTGGCTGCTGGGCTCGGTGGCCAATCGCGACTGGGTAGA
CATCGCCCGCCAGATCCCGGCCCTGGCGGTGGGCGGGGCCTTGAGCCTCTACGCCGCCCGCGGCCTCGTCATGCTGACCC
TGGGCGAGGAGGCGGCGGCGCTCTCGGGCCTGCCCATGACCCGCCTGCGCGCCGCCGCGGTGGCCGGCGCCTCGCTGCTG
ACCGGCGCCTCGGTGGCCATGGCCGGCATCGTCGGCTTCGTGGGCCTGGCCGCGCCGCACCTCGTCCGGGCCGGGGCGGG
CGGCGATCCGGGCCGGATGCTGCTGCCCTCGGCGCTGGCGGGGGCGGTGCTGCTGGCCGCCGCCGATCTCGCCGCCCGCC
TGATTCCCACCGACATCGAGCTGAAGCTGGGCGTCGTCACGGCCCTGTTCGGCGCGCCGCTGTTCGCCCTGATCGCCTGG
CGCGCGGCCAGGAGCTGGCGCGGATGA

Upstream 100 bases:

>100_bases
CGCGCGAGCGCGCCGTCGCCCGCCTGCCCGGCGCCCTCCTTGGCTGTCCCGACTGGGGCGCGGGCGAGGCCGTGGCGCTG
CTGGCGGCCGAGGCGCCCCG

Downstream 100 bases:

>100_bases
ACCTCCCGCTGGCCCTCCACGACGCCGCGGTCCGCCGCGGCCGCCGCCTCGTCCTCGACGGGGCGGGCCTCGAGGCGCGC
GCCGGCGAGGTGGTGGGGGT

Product: iron compound ABC transporter, permease protein

Products: ADP; phosphate; cob(I)alamin [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 328; Mature: 328

Protein sequence:

>328_residues
MRPLVLNLALAAGVLAFAAAGLLLGETALSGAQYAQAFRDPASGPHVVLFEIRLPRTVAALVVGAALGLAGAVMQGLLRN
PLADPGVLGVSGGAGLGAALAISLGLSAIPGAIEAAALAAALATGLLLTGLAARFREPETLILFGVALSAFLGALTSLVF
NFSPSPVTLAEVFGWLLGSVANRDWVDIARQIPALAVGGALSLYAARGLVMLTLGEEAAALSGLPMTRLRAAAVAGASLL
TGASVAMAGIVGFVGLAAPHLVRAGAGGDPGRMLLPSALAGAVLLAAADLAARLIPTDIELKLGVVTALFGAPLFALIAW
RAARSWRG

Sequences:

>Translated_328_residues
MRPLVLNLALAAGVLAFAAAGLLLGETALSGAQYAQAFRDPASGPHVVLFEIRLPRTVAALVVGAALGLAGAVMQGLLRN
PLADPGVLGVSGGAGLGAALAISLGLSAIPGAIEAAALAAALATGLLLTGLAARFREPETLILFGVALSAFLGALTSLVF
NFSPSPVTLAEVFGWLLGSVANRDWVDIARQIPALAVGGALSLYAARGLVMLTLGEEAAALSGLPMTRLRAAAVAGASLL
TGASVAMAGIVGFVGLAAPHLVRAGAGGDPGRMLLPSALAGAVLLAAADLAARLIPTDIELKLGVVTALFGAPLFALIAW
RAARSWRG
>Mature_328_residues
MRPLVLNLALAAGVLAFAAAGLLLGETALSGAQYAQAFRDPASGPHVVLFEIRLPRTVAALVVGAALGLAGAVMQGLLRN
PLADPGVLGVSGGAGLGAALAISLGLSAIPGAIEAAALAAALATGLLLTGLAARFREPETLILFGVALSAFLGALTSLVF
NFSPSPVTLAEVFGWLLGSVANRDWVDIARQIPALAVGGALSLYAARGLVMLTLGEEAAALSGLPMTRLRAAAVAGASLL
TGASVAMAGIVGFVGLAAPHLVRAGAGGDPGRMLLPSALAGAVLLAAADLAARLIPTDIELKLGVVTALFGAPLFALIAW
RAARSWRG

Specific function: Probably part of an ABC transporter complex. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0609

COG function: function code P; ABC-type Fe3+-siderophore transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788004, Length=288, Percent_Identity=42.7083333333333, Blast_Score=145, Evalue=2e-36,
Organism=Escherichia coli, GI1790740, Length=270, Percent_Identity=41.4814814814815, Blast_Score=144, Evalue=7e-36,
Organism=Escherichia coli, GI1790741, Length=331, Percent_Identity=34.7432024169184, Blast_Score=117, Evalue=9e-28,
Organism=Escherichia coli, GI1786347, Length=293, Percent_Identity=36.1774744027304, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI1786805, Length=311, Percent_Identity=35.3697749196142, Blast_Score=95, Evalue=5e-21,
Organism=Escherichia coli, GI1786804, Length=272, Percent_Identity=31.25, Blast_Score=79, Evalue=4e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000522 [H]

Pfam domain/function: PF01032 FecCD [H]

EC number: NA

Molecular weight: Translated: 32488; Mature: 32488

Theoretical pI: Translated: 10.54; Mature: 10.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRPLVLNLALAAGVLAFAAAGLLLGETALSGAQYAQAFRDPASGPHVVLFEIRLPRTVAA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCHHHHH
LVVGAALGLAGAVMQGLLRNPLADPGVLGVSGGAGLGAALAISLGLSAIPGAIEAAALAA
HHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCHHHHHHHHHHHHHCCHHHHHHHHHH
ALATGLLLTGLAARFREPETLILFGVALSAFLGALTSLVFNFSPSPVTLAEVFGWLLGSV
HHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
ANRDWVDIARQIPALAVGGALSLYAARGLVMLTLGEEAAALSGLPMTRLRAAAVAGASLL
CCCHHHHHHHHCCHHHHHHHHHHHHHCCEEEEEECCHHHHHCCCCHHHHHHHHHHHHHHH
TGASVAMAGIVGFVGLAAPHLVRAGAGGDPGRMLLPSALAGAVLLAAADLAARLIPTDIE
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCH
LKLGVVTALFGAPLFALIAWRAARSWRG
HHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MRPLVLNLALAAGVLAFAAAGLLLGETALSGAQYAQAFRDPASGPHVVLFEIRLPRTVAA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCHHHHH
LVVGAALGLAGAVMQGLLRNPLADPGVLGVSGGAGLGAALAISLGLSAIPGAIEAAALAA
HHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCHHHHHHHHHHHHHCCHHHHHHHHHH
ALATGLLLTGLAARFREPETLILFGVALSAFLGALTSLVFNFSPSPVTLAEVFGWLLGSV
HHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
ANRDWVDIARQIPALAVGGALSLYAARGLVMLTLGEEAAALSGLPMTRLRAAAVAGASLL
CCCHHHHHHHHCCHHHHHHHHHHHHHCCEEEEEECCHHHHHCCCCHHHHHHHHHHHHHHH
TGASVAMAGIVGFVGLAAPHLVRAGAGGDPGRMLLPSALAGAVLLAAADLAARLIPTDIE
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCH
LKLGVVTALFGAPLFALIAWRAARSWRG
HHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; cob(I)alamin [Periplasm]; H2O [C]

Specific reaction: ATP + cob(I)alamin [Periplasm] + H2O = ADP + phosphate + cob(I)alamin [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9639930; 9384377 [H]