BacMap

Definition	Phenylobacterium zucineum HLK1, complete genome.
Accession	NC_011144
Length	3,996,255

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The map label for this gene is hmuV [H]

Identifier: 197105356

GI number: 197105356

Start: 2119440

End: 2120207

Strand: Reverse

Name: hmuV [H]

Synonym: PHZ_c1893

Alternate gene names: 197105356

Gene position: 2120207-2119440 (Counterclockwise)

Preceding gene: 197105357

Following gene: 197105355

Centisome position: 53.05

GC content: 79.43

Gene sequence:

>768_bases
ATGAACCTCCCGCTGGCCCTCCACGACGCCGCGGTCCGCCGCGGCCGCCGCCTCGTCCTCGACGGGGCGGGCCTCGAGGC
GCGCGCCGGCGAGGTGGTGGGGGTGGTCGGCGCCAACGGCTCGGGCAAGACCACGCTGCTGCGCGCGGCCCTGGGCCTAG
TGCGGCTGGAGCGCGGCCGCGCCAGCCTCTGCGGCCGCGAGGTCGCCCGCCTATCCGAGGCCGAGCGTGCGCGCCTGGCC
GGCTACCTGCCGCAGGACCGGCACATCGGCTGGAACATGAGCGCCTGGCGGGTGGCCAGCCTCGGCGCAGCGCTGGCCCC
GCCCGCGCAGGCCCGCCACCGGGCCGAGGCGGCCCTGGCGCGTGTCGGGCTGGGCGGGCTCGCCGACCGCGGCGTGCTGC
AGATGTCCGGCGGCGAGCGGGCCCGGGTGCTGCTGGCGCGGCTGCTGGCGACCGAGGCGCCCCTGCTGGTGGCCGACGAG
CCGGCCGCCGGCCTCGATCCCGACGCCCAGCTCCTGGCGCTCGACCTGTTCCGTGAGGAGGCGGGGCGGGGGGCCGCCGT
GGTCCTCACCCTGCACGACCTGGCGCTGGCGGCCCGCGCCTGCGACCGCCTCGTGGTCCTCGCCGCCGGGCGCGTCGTCG
CCGAGGGTCCGGCCGGACAGGCCCTGACGCCCGAAGTGCTGGCCCGCGCCTTCGGCCTGGTGGGCCGGTTGGAGCTGGCC
CCCGACGGCGCCATGCTGGCGGTCAGGCGGGAAGGGGCCCCTCGATGA

Upstream 100 bases:

>100_bases
TTCCCACCGACATCGAGCTGAAGCTGGGCGTCGTCACGGCCCTGTTCGGCGCGCCGCTGTTCGCCCTGATCGCCTGGCGC
GCGGCCAGGAGCTGGCGCGG

Downstream 100 bases:

>100_bases
GGTTCGCACGCTGGGTGTTCACCCTGGCTGGGATCTACGGCCTGGTCGTGGTCGCGCCGATGTATTTCGCGGAAGCGGCG
ATGGGCGAGGCCGGCCGGCC

Product: iron compound ABC transporter, ATP-binding protein

Products: ADP; phosphate; iron dicitrate [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 255; Mature: 255

Protein sequence:

>255_residues
MNLPLALHDAAVRRGRRLVLDGAGLEARAGEVVGVVGANGSGKTTLLRAALGLVRLERGRASLCGREVARLSEAERARLA
GYLPQDRHIGWNMSAWRVASLGAALAPPAQARHRAEAALARVGLGGLADRGVLQMSGGERARVLLARLLATEAPLLVADE
PAAGLDPDAQLLALDLFREEAGRGAAVVLTLHDLALAARACDRLVVLAAGRVVAEGPAGQALTPEVLARAFGLVGRLELA
PDGAMLAVRREGAPR

Sequences:

>Translated_255_residues
MNLPLALHDAAVRRGRRLVLDGAGLEARAGEVVGVVGANGSGKTTLLRAALGLVRLERGRASLCGREVARLSEAERARLA
GYLPQDRHIGWNMSAWRVASLGAALAPPAQARHRAEAALARVGLGGLADRGVLQMSGGERARVLLARLLATEAPLLVADE
PAAGLDPDAQLLALDLFREEAGRGAAVVLTLHDLALAARACDRLVVLAAGRVVAEGPAGQALTPEVLARAFGLVGRLELA
PDGAMLAVRREGAPR
>Mature_255_residues
MNLPLALHDAAVRRGRRLVLDGAGLEARAGEVVGVVGANGSGKTTLLRAALGLVRLERGRASLCGREVARLSEAERARLA
GYLPQDRHIGWNMSAWRVASLGAALAPPAQARHRAEAALARVGLGGLADRGVLQMSGGERARVLLARLLATEAPLLVADE
PAAGLDPDAQLLALDLFREEAGRGAAVVLTLHDLALAARACDRLVVLAAGRVVAEGPAGQALTPEVLARAFGLVGRLELA
PDGAMLAVRREGAPR

Specific function: Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system [H]

COG id: COG1120

COG function: function code PH; ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI150417984, Length=207, Percent_Identity=33.8164251207729, Blast_Score=87, Evalue=1e-17,
Organism=Homo sapiens, GI105990541, Length=186, Percent_Identity=30.1075268817204, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI31657092, Length=208, Percent_Identity=27.8846153846154, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI21536376, Length=237, Percent_Identity=26.1603375527426, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI42490749, Length=213, Percent_Identity=27.2300469483568, Blast_Score=72, Evalue=4e-13,
Organism=Homo sapiens, GI47078218, Length=245, Percent_Identity=27.7551020408163, Blast_Score=72, Evalue=6e-13,
Organism=Homo sapiens, GI45446740, Length=245, Percent_Identity=27.7551020408163, Blast_Score=72, Evalue=6e-13,
Organism=Homo sapiens, GI27436953, Length=209, Percent_Identity=26.7942583732057, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI116734710, Length=237, Percent_Identity=26.5822784810127, Blast_Score=68, Evalue=7e-12,
Organism=Homo sapiens, GI11967969, Length=225, Percent_Identity=28, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI27881501, Length=185, Percent_Identity=24.8648648648649, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI30795238, Length=185, Percent_Identity=24.8648648648649, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI6005701, Length=207, Percent_Identity=26.0869565217391, Blast_Score=66, Evalue=4e-11,
Organism=Escherichia coli, GI1790739, Length=249, Percent_Identity=30.9236947791165, Blast_Score=113, Evalue=1e-26,
Organism=Escherichia coli, GI1790544, Length=239, Percent_Identity=33.0543933054393, Blast_Score=107, Evalue=8e-25,
Organism=Escherichia coli, GI1786345, Length=236, Percent_Identity=34.7457627118644, Blast_Score=105, Evalue=3e-24,
Organism=Escherichia coli, GI1786803, Length=226, Percent_Identity=30.9734513274336, Blast_Score=105, Evalue=4e-24,
Organism=Escherichia coli, GI1786398, Length=235, Percent_Identity=29.7872340425532, Blast_Score=97, Evalue=7e-22,
Organism=Escherichia coli, GI1788225, Length=216, Percent_Identity=31.9444444444444, Blast_Score=94, Evalue=7e-21,
Organism=Escherichia coli, GI1789593, Length=228, Percent_Identity=30.7017543859649, Blast_Score=93, Evalue=1e-20,
Organism=Escherichia coli, GI1789963, Length=220, Percent_Identity=34.0909090909091, Blast_Score=93, Evalue=1e-20,
Organism=Escherichia coli, GI1786703, Length=204, Percent_Identity=35.7843137254902, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1789873, Length=210, Percent_Identity=30.952380952381, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1788761, Length=206, Percent_Identity=34.4660194174757, Blast_Score=92, Evalue=3e-20,
Organism=Escherichia coli, GI1788165, Length=233, Percent_Identity=32.1888412017167, Blast_Score=92, Evalue=4e-20,
Organism=Escherichia coli, GI1787029, Length=230, Percent_Identity=28.695652173913, Blast_Score=91, Evalue=8e-20,
Organism=Escherichia coli, GI87081709, Length=228, Percent_Identity=29.8245614035088, Blast_Score=87, Evalue=9e-19,
Organism=Escherichia coli, GI1787712, Length=196, Percent_Identity=32.1428571428571, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1787105, Length=206, Percent_Identity=32.0388349514563, Blast_Score=85, Evalue=4e-18,
Organism=Escherichia coli, GI1787500, Length=213, Percent_Identity=30.0469483568075, Blast_Score=85, Evalue=5e-18,
Organism=Escherichia coli, GI1789032, Length=218, Percent_Identity=31.1926605504587, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1786872, Length=222, Percent_Identity=30.1801801801802, Blast_Score=82, Evalue=2e-17,
Organism=Escherichia coli, GI1787758, Length=211, Percent_Identity=28.9099526066351, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1787792, Length=228, Percent_Identity=31.140350877193, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI87081834, Length=204, Percent_Identity=32.843137254902, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1787759, Length=251, Percent_Identity=29.8804780876494, Blast_Score=80, Evalue=9e-17,
Organism=Escherichia coli, GI1786319, Length=232, Percent_Identity=27.1551724137931, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI48994883, Length=233, Percent_Identity=29.6137339055794, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1788002, Length=219, Percent_Identity=32.4200913242009, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1788506, Length=225, Percent_Identity=28.4444444444444, Blast_Score=78, Evalue=5e-16,
Organism=Escherichia coli, GI1787089, Length=216, Percent_Identity=29.1666666666667, Blast_Score=78, Evalue=5e-16,
Organism=Escherichia coli, GI1786563, Length=200, Percent_Identity=35.5, Blast_Score=78, Evalue=7e-16,
Organism=Escherichia coli, GI1789672, Length=219, Percent_Identity=26.4840182648402, Blast_Score=77, Evalue=8e-16,
Organism=Escherichia coli, GI1788450, Length=228, Percent_Identity=32.0175438596491, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI48994997, Length=205, Percent_Identity=34.1463414634146, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1788644, Length=229, Percent_Identity=28.82096069869, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI87081782, Length=206, Percent_Identity=30.5825242718447, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI1787548, Length=229, Percent_Identity=27.9475982532751, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI48994943, Length=214, Percent_Identity=28.5046728971963, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1789864, Length=247, Percent_Identity=26.3157894736842, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI48995001, Length=200, Percent_Identity=28, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1787370, Length=235, Percent_Identity=28.936170212766, Blast_Score=72, Evalue=2e-14,
Organism=Escherichia coli, GI1790525, Length=221, Percent_Identity=25.3393665158371, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1790467, Length=205, Percent_Identity=29.7560975609756, Blast_Score=71, Evalue=6e-14,
Organism=Escherichia coli, GI1786253, Length=216, Percent_Identity=29.1666666666667, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1787112, Length=212, Percent_Identity=30.6603773584906, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1788897, Length=236, Percent_Identity=27.1186440677966, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI87081791, Length=203, Percent_Identity=29.064039408867, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI87082268, Length=231, Percent_Identity=26.8398268398268, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1790534, Length=207, Percent_Identity=32.3671497584541, Blast_Score=67, Evalue=9e-13,
Organism=Escherichia coli, GI1789586, Length=238, Percent_Identity=29.8319327731092, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI145693107, Length=225, Percent_Identity=29.7777777777778, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1788210, Length=205, Percent_Identity=24.8780487804878, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1787164, Length=215, Percent_Identity=32.093023255814, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI2367384, Length=154, Percent_Identity=29.8701298701299, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1789991, Length=201, Percent_Identity=25.8706467661692, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1789890, Length=225, Percent_Identity=30.2222222222222, Blast_Score=62, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI71983523, Length=222, Percent_Identity=27.4774774774775, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI71983516, Length=222, Percent_Identity=27.4774774774775, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI71983510, Length=222, Percent_Identity=27.4774774774775, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17510237, Length=191, Percent_Identity=28.2722513089005, Blast_Score=75, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI115533608, Length=199, Percent_Identity=26.1306532663317, Blast_Score=75, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI17539902, Length=239, Percent_Identity=27.1966527196653, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17565586, Length=194, Percent_Identity=25.7731958762887, Blast_Score=71, Evalue=6e-13,
Organism=Caenorhabditis elegans, GI17558664, Length=206, Percent_Identity=28.1553398058252, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI25146777, Length=205, Percent_Identity=23.9024390243902, Blast_Score=68, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI193202349, Length=221, Percent_Identity=27.6018099547511, Blast_Score=64, Evalue=7e-11,
Organism=Saccharomyces cerevisiae, GI6323959, Length=227, Percent_Identity=28.6343612334802, Blast_Score=76, Evalue=6e-15,
Organism=Drosophila melanogaster, GI28574150, Length=215, Percent_Identity=26.9767441860465, Blast_Score=83, Evalue=2e-16,
Organism=Drosophila melanogaster, GI116007328, Length=215, Percent_Identity=26.9767441860465, Blast_Score=83, Evalue=2e-16,
Organism=Drosophila melanogaster, GI85724864, Length=230, Percent_Identity=28.2608695652174, Blast_Score=72, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24580555, Length=230, Percent_Identity=28.2608695652174, Blast_Score=72, Evalue=2e-13,
Organism=Drosophila melanogaster, GI85816269, Length=230, Percent_Identity=28.2608695652174, Blast_Score=72, Evalue=3e-13,
Organism=Drosophila melanogaster, GI24580553, Length=230, Percent_Identity=28.2608695652174, Blast_Score=72, Evalue=3e-13,
Organism=Drosophila melanogaster, GI161076682, Length=213, Percent_Identity=28.6384976525822, Blast_Score=72, Evalue=3e-13,
Organism=Drosophila melanogaster, GI161076684, Length=213, Percent_Identity=28.6384976525822, Blast_Score=72, Evalue=3e-13,
Organism=Drosophila melanogaster, GI24581617, Length=213, Percent_Identity=28.6384976525822, Blast_Score=72, Evalue=3e-13,
Organism=Drosophila melanogaster, GI24581615, Length=213, Percent_Identity=28.6384976525822, Blast_Score=72, Evalue=3e-13,
Organism=Drosophila melanogaster, GI24666092, Length=202, Percent_Identity=24.2574257425743, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI28574533, Length=221, Percent_Identity=26.2443438914027, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI45552805, Length=162, Percent_Identity=31.4814814814815, Blast_Score=68, Evalue=8e-12,
Organism=Drosophila melanogaster, GI17647219, Length=162, Percent_Identity=31.4814814814815, Blast_Score=67, Evalue=8e-12,
Organism=Drosophila melanogaster, GI85725262, Length=201, Percent_Identity=28.8557213930348, Blast_Score=65, Evalue=4e-11,
Organism=Drosophila melanogaster, GI24643674, Length=209, Percent_Identity=26.3157894736842, Blast_Score=65, Evalue=6e-11,
Organism=Drosophila melanogaster, GI19920532, Length=213, Percent_Identity=27.2300469483568, Blast_Score=64, Evalue=7e-11,
Organism=Drosophila melanogaster, GI24580930, Length=213, Percent_Identity=27.2300469483568, Blast_Score=64, Evalue=7e-11,
Organism=Drosophila melanogaster, GI17136592, Length=238, Percent_Identity=28.5714285714286, Blast_Score=64, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR015863
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 26417; Mature: 26417

Theoretical pI: Translated: 11.16; Mature: 11.16

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLPLALHDAAVRRGRRLVLDGAGLEARAGEVVGVVGANGSGKTTLLRAALGLVRLERGR
CCCCCHHHHHHHHCCCEEEEECCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCH
ASLCGREVARLSEAERARLAGYLPQDRHIGWNMSAWRVASLGAALAPPAQARHRAEAALA
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHH
RVGLGGLADRGVLQMSGGERARVLLARLLATEAPLLVADEPAAGLDPDAQLLALDLFREE
HHCCCCCCCCCEEEECCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHHH
AGRGAAVVLTLHDLALAARACDRLVVLAAGRVVAEGPAGQALTPEVLARAFGLVGRLELA
CCCCEEEEEEHHHHHHHHHHHHHEEEEECCCEEECCCCCCCCCHHHHHHHHHHHEEEEEC
PDGAMLAVRREGAPR
CCCCEEEEECCCCCC
>Mature Secondary Structure
MNLPLALHDAAVRRGRRLVLDGAGLEARAGEVVGVVGANGSGKTTLLRAALGLVRLERGR
CCCCCHHHHHHHHCCCEEEEECCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCH
ASLCGREVARLSEAERARLAGYLPQDRHIGWNMSAWRVASLGAALAPPAQARHRAEAALA
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHH
RVGLGGLADRGVLQMSGGERARVLLARLLATEAPLLVADEPAAGLDPDAQLLALDLFREE
HHCCCCCCCCCEEEECCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHHH
AGRGAAVVLTLHDLALAARACDRLVVLAAGRVVAEGPAGQALTPEVLARAFGLVGRLELA
CCCCEEEEEEHHHHHHHHHHHHHEEEEECCCEEECCCCCCCCCHHHHHHHHHHHEEEEEC
PDGAMLAVRREGAPR
CCCCEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; iron dicitrate [Periplasm]; H2O [C]

Specific reaction: ATP + iron dicitrate [Periplasm] + H2O = ADP + phosphate + iron dicitrate [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA